data_7Q35 # _model_server_result.job_id vcbtcWBLBDABKg3WlF1baQ _model_server_result.datetime_utc '2024-11-13 04:53:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q35 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7Q35 # _exptl.entry_id 7Q35 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Q35 _cell.length_a 115.33 _cell.length_b 119.986 _cell.length_c 36.461 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q35 _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 217 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.339 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 397 n n C1 C6 RET sing 398 n n C1 C16 RET sing 399 n n C1 C17 RET sing 400 n n C2 C3 RET sing 401 n n C2 H21 RET sing 402 n n C2 H22 RET sing 403 n n C3 C4 RET sing 404 n n C3 H31 RET sing 405 n n C3 H32 RET sing 406 n n C4 C5 RET sing 407 n n C4 H41 RET sing 408 n n C4 H42 RET sing 409 n n C5 C6 RET doub 410 n n C5 C18 RET sing 411 n n C6 C7 RET sing 412 n n C7 C8 RET doub 413 e n C7 H7 RET sing 414 n n C8 C9 RET sing 415 n n C8 H8 RET sing 416 n n C9 C10 RET doub 417 e n C9 C19 RET sing 418 n n C10 C11 RET sing 419 n n C10 H10 RET sing 420 n n C11 C12 RET doub 421 e n C11 H11 RET sing 422 n n C12 C13 RET sing 423 n n C12 H12 RET sing 424 n n C13 C14 RET doub 425 e n C13 C20 RET sing 426 n n C14 C15 RET sing 427 n n C14 H14 RET sing 428 n n C15 O1 RET doub 429 n n C15 H15 RET sing 430 n n C16 H161 RET sing 431 n n C16 H162 RET sing 432 n n C16 H163 RET sing 433 n n C17 H171 RET sing 434 n n C17 H172 RET sing 435 n n C17 H173 RET sing 436 n n C18 H181 RET sing 437 n n C18 H182 RET sing 438 n n C18 H183 RET sing 439 n n C19 H191 RET sing 440 n n C19 H192 RET sing 441 n n C19 H193 RET sing 442 n n C20 H201 RET sing 443 n n C20 H202 RET sing 444 n n C20 H203 RET sing 445 n n # _atom_sites.entry_id 7Q35 _atom_sites.fract_transf_matrix[1][1] 0.008671 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008334 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027427 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 LFA A 1 302 1 LFA LFA . D 3 LFA A 1 303 2 LFA LFA . E 3 LFA A 1 304 3 LFA LFA . F 3 LFA A 1 305 4 LFA LFA . G 3 LFA A 1 306 5 LFA LFA . H 3 LFA A 1 307 6 LFA LFA . I 3 LFA A 1 308 7 LFA LFA . J 3 LFA A 1 309 8 LFA LFA . K 3 LFA A 1 310 9 LFA LFA . L 3 LFA A 1 311 10 LFA LFA . M 3 LFA A 1 312 11 LFA LFA . N 4 OLA A 1 313 12 OLA OLA . O 4 OLA A 1 314 13 OLA OLA . P 4 OLA A 1 315 14 OLA OLA . Q 5 HEX A 1 316 15 HEX HEX . R 5 HEX A 1 317 16 HEX HEX . S 5 HEX A 1 318 17 HEX HEX . T 6 SO4 A 1 319 18 SO4 SO4 . U 7 KR A 1 320 1 KR KR . V 7 KR A 1 321 2 KR KR . W 7 KR A 1 322 3 KR KR . X 7 KR A 1 323 4 KR KR . Y 7 KR A 1 324 5 KR KR . Z 7 KR A 1 325 6 KR KR . AA 7 KR A 1 326 7 KR KR . BA 7 KR A 1 327 8 KR KR . CA 7 KR A 1 328 9 KR KR . DA 7 KR A 1 329 10 KR KR . EA 7 KR A 1 330 11 KR KR . FA 7 KR A 1 331 12 KR KR . GA 7 KR A 1 332 13 KR KR . HA 7 KR A 1 333 14 KR KR . IA 7 KR A 1 334 15 KR KR . JA 7 KR A 1 335 16 KR KR . KA 7 KR A 1 336 17 KR KR . LA 7 KR A 1 337 18 KR KR . MA 7 KR A 1 338 19 KR KR . NA 7 KR A 1 339 20 KR KR . OA 7 KR A 1 340 21 KR KR . PA 7 KR A 1 341 22 KR KR . QA 7 KR A 1 342 23 KR KR . RA 7 KR A 1 343 24 KR KR . SA 7 KR A 1 344 25 KR KR . TA 7 KR A 1 345 26 KR KR . UA 7 KR A 1 346 27 KR KR . VA 7 KR A 1 347 28 KR KR . WA 7 KR A 1 348 29 KR KR . XA 7 KR A 1 349 30 KR KR . YA 7 KR A 1 350 31 KR KR . ZA 7 KR A 1 351 32 KR KR . AB 7 KR A 1 352 33 KR KR . BB 7 KR A 1 353 34 KR KR . CB 7 KR A 1 354 35 KR KR . DB 8 HOH A 1 401 15 HOH HOH . DB 8 HOH A 2 402 21 HOH HOH . DB 8 HOH A 3 403 60 HOH HOH . DB 8 HOH A 4 404 30 HOH HOH . DB 8 HOH A 5 405 68 HOH HOH . DB 8 HOH A 6 406 71 HOH HOH . DB 8 HOH A 7 407 81 HOH HOH . DB 8 HOH A 8 408 64 HOH HOH . DB 8 HOH A 9 409 84 HOH HOH . DB 8 HOH A 10 410 65 HOH HOH . DB 8 HOH A 11 411 72 HOH HOH . DB 8 HOH A 12 412 47 HOH HOH . DB 8 HOH A 13 413 41 HOH HOH . DB 8 HOH A 14 414 12 HOH HOH . DB 8 HOH A 15 415 92 HOH HOH . DB 8 HOH A 16 416 97 HOH HOH . DB 8 HOH A 17 417 16 HOH HOH . DB 8 HOH A 18 418 9 HOH HOH . DB 8 HOH A 19 419 19 HOH HOH . DB 8 HOH A 20 420 5 HOH HOH . DB 8 HOH A 21 421 2 HOH HOH . DB 8 HOH A 22 422 69 HOH HOH . DB 8 HOH A 23 423 38 HOH HOH . DB 8 HOH A 24 424 79 HOH HOH . DB 8 HOH A 25 425 6 HOH HOH . DB 8 HOH A 26 426 1 HOH HOH . DB 8 HOH A 27 427 43 HOH HOH . DB 8 HOH A 28 428 42 HOH HOH . DB 8 HOH A 29 429 26 HOH HOH . DB 8 HOH A 30 430 54 HOH HOH . DB 8 HOH A 31 431 67 HOH HOH . DB 8 HOH A 32 432 23 HOH HOH . DB 8 HOH A 33 433 45 HOH HOH . DB 8 HOH A 34 434 10 HOH HOH . DB 8 HOH A 35 435 94 HOH HOH . DB 8 HOH A 36 436 44 HOH HOH . DB 8 HOH A 37 437 70 HOH HOH . DB 8 HOH A 38 438 50 HOH HOH . DB 8 HOH A 39 439 105 HOH HOH . DB 8 HOH A 40 440 36 HOH HOH . DB 8 HOH A 41 441 22 HOH HOH . DB 8 HOH A 42 442 14 HOH HOH . DB 8 HOH A 43 443 4 HOH HOH . DB 8 HOH A 44 444 74 HOH HOH . DB 8 HOH A 45 445 78 HOH HOH . DB 8 HOH A 46 446 57 HOH HOH . DB 8 HOH A 47 447 46 HOH HOH . DB 8 HOH A 48 448 11 HOH HOH . DB 8 HOH A 49 449 3 HOH HOH . DB 8 HOH A 50 450 8 HOH HOH . DB 8 HOH A 51 451 20 HOH HOH . DB 8 HOH A 52 452 83 HOH HOH . DB 8 HOH A 53 453 82 HOH HOH . DB 8 HOH A 54 454 89 HOH HOH . DB 8 HOH A 55 455 34 HOH HOH . DB 8 HOH A 56 456 28 HOH HOH . DB 8 HOH A 57 457 27 HOH HOH . DB 8 HOH A 58 458 48 HOH HOH . DB 8 HOH A 59 459 18 HOH HOH . DB 8 HOH A 60 460 13 HOH HOH . DB 8 HOH A 61 461 7 HOH HOH . DB 8 HOH A 62 462 96 HOH HOH . DB 8 HOH A 63 463 61 HOH HOH . DB 8 HOH A 64 464 106 HOH HOH . DB 8 HOH A 65 465 29 HOH HOH . DB 8 HOH A 66 466 80 HOH HOH . DB 8 HOH A 67 467 99 HOH HOH . DB 8 HOH A 68 468 90 HOH HOH . DB 8 HOH A 69 469 75 HOH HOH . DB 8 HOH A 70 470 91 HOH HOH . DB 8 HOH A 71 471 85 HOH HOH . DB 8 HOH A 72 472 76 HOH HOH . DB 8 HOH A 73 473 52 HOH HOH . DB 8 HOH A 74 474 53 HOH HOH . DB 8 HOH A 75 475 100 HOH HOH . DB 8 HOH A 76 476 62 HOH HOH . DB 8 HOH A 77 477 88 HOH HOH . DB 8 HOH A 78 478 59 HOH HOH . DB 8 HOH A 79 479 63 HOH HOH . DB 8 HOH A 80 480 101 HOH HOH . DB 8 HOH A 81 481 73 HOH HOH . DB 8 HOH A 82 482 49 HOH HOH . DB 8 HOH A 83 483 25 HOH HOH . DB 8 HOH A 84 484 86 HOH HOH . DB 8 HOH A 85 485 51 HOH HOH . DB 8 HOH A 86 486 77 HOH HOH . DB 8 HOH A 87 487 33 HOH HOH . DB 8 HOH A 88 488 37 HOH HOH . DB 8 HOH A 89 489 103 HOH HOH . DB 8 HOH A 90 490 56 HOH HOH . DB 8 HOH A 91 491 17 HOH HOH . DB 8 HOH A 92 492 31 HOH HOH . DB 8 HOH A 93 493 40 HOH HOH . DB 8 HOH A 94 494 95 HOH HOH . DB 8 HOH A 95 495 32 HOH HOH . DB 8 HOH A 96 496 104 HOH HOH . DB 8 HOH A 97 497 24 HOH HOH . DB 8 HOH A 98 498 35 HOH HOH . DB 8 HOH A 99 499 55 HOH HOH . DB 8 HOH A 100 500 58 HOH HOH . DB 8 HOH A 101 501 39 HOH HOH . DB 8 HOH A 102 502 93 HOH HOH . DB 8 HOH A 103 503 98 HOH HOH . DB 8 HOH A 104 504 66 HOH HOH . DB 8 HOH A 105 505 87 HOH HOH . DB 8 HOH A 106 506 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 -11.039 -24.491 18.751 1 25.83 ? C1 RET 301 A 1 HETATM 2 C C2 RET . . . B 2 -10.519 -23.207 19.424 1 28.53 ? C2 RET 301 A 1 HETATM 3 C C3 RET . . . B 2 -9.793 -23.343 20.689 1 26.92 ? C3 RET 301 A 1 HETATM 4 C C4 RET . . . B 2 -8.892 -24.547 20.736 1 24.69 ? C4 RET 301 A 1 HETATM 5 C C5 RET . . . B 2 -9.529 -25.799 20.236 1 24 ? C5 RET 301 A 1 HETATM 6 C C6 RET . . . B 2 -10.436 -25.809 19.235 1 23.61 ? C6 RET 301 A 1 HETATM 7 C C7 RET . . . B 2 -10.821 -27.115 18.681 1 23.03 ? C7 RET 301 A 1 HETATM 8 C C8 RET . . . B 2 -11.581 -27.381 17.57 1 22.8 ? C8 RET 301 A 1 HETATM 9 C C9 RET . . . B 2 -11.648 -28.611 16.956 1 21.72 ? C9 RET 301 A 1 HETATM 10 C C10 RET . . . B 2 -12.509 -28.777 15.864 1 21.97 ? C10 RET 301 A 1 HETATM 11 C C11 RET . . . B 2 -12.663 -29.832 15.038 1 22.49 ? C11 RET 301 A 1 HETATM 12 C C12 RET . . . B 2 -13.545 -29.853 14.021 1 22 ? C12 RET 301 A 1 HETATM 13 C C13 RET . . . B 2 -13.899 -30.901 13.162 1 23.76 ? C13 RET 301 A 1 HETATM 14 C C14 RET . . . B 2 -14.735 -30.521 12.096 1 25.02 ? C14 RET 301 A 1 HETATM 15 C C15 RET . . . B 2 -15.66 -31.281 11.372 1 25.26 ? C15 RET 301 A 1 HETATM 16 C C16 RET . . . B 2 -12.565 -24.498 18.945 1 24.58 ? C16 RET 301 A 1 HETATM 17 C C17 RET . . . B 2 -10.739 -24.291 17.246 1 23.75 ? C17 RET 301 A 1 HETATM 18 C C18 RET . . . B 2 -9.003 -27.026 20.927 1 24.08 ? C18 RET 301 A 1 HETATM 19 C C19 RET . . . B 2 -10.812 -29.791 17.447 1 21.61 ? C19 RET 301 A 1 HETATM 20 C C20 RET . . . B 2 -13.264 -32.219 13.383 1 25.25 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #