data_7Q36 # _model_server_result.job_id whFRiWg1OFcVgnmyvbm6-w _model_server_result.datetime_utc '2024-11-13 04:42:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q36 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"PA","auth_seq_id":341}' # _entry.id 7Q36 # _exptl.entry_id 7Q36 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Q36 _cell.length_a 40.489 _cell.length_b 82.18 _cell.length_c 233.442 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q36 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id PA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 255 A LYS 255 1_555 PA C15 RET . A RET 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? metalc ? metalc1 A OH TYR 25 A TYR 25 1_555 DA NA NA . A NA 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc2 A O THR 83 A THR 83 1_555 DA NA NA . A NA 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc3 A O PHE 86 A PHE 86 1_555 DA NA NA . A NA 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc4 DA NA NA . A NA 329 1_555 QA O HOH . A HOH 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc5 DA NA NA . A NA 329 1_555 QA O HOH . A HOH 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 344 n n C1 C6 RET sing 345 n n C1 C16 RET sing 346 n n C1 C17 RET sing 347 n n C2 C3 RET sing 348 n n C2 H21 RET sing 349 n n C2 H22 RET sing 350 n n C3 C4 RET sing 351 n n C3 H31 RET sing 352 n n C3 H32 RET sing 353 n n C4 C5 RET sing 354 n n C4 H41 RET sing 355 n n C4 H42 RET sing 356 n n C5 C6 RET doub 357 n n C5 C18 RET sing 358 n n C6 C7 RET sing 359 n n C7 C8 RET doub 360 e n C7 H7 RET sing 361 n n C8 C9 RET sing 362 n n C8 H8 RET sing 363 n n C9 C10 RET doub 364 e n C9 C19 RET sing 365 n n C10 C11 RET sing 366 n n C10 H10 RET sing 367 n n C11 C12 RET doub 368 e n C11 H11 RET sing 369 n n C12 C13 RET sing 370 n n C12 H12 RET sing 371 n n C13 C14 RET doub 372 e n C13 C20 RET sing 373 n n C14 C15 RET sing 374 n n C14 H14 RET sing 375 n n C15 O1 RET doub 376 n n C15 H15 RET sing 377 n n C16 H161 RET sing 378 n n C16 H162 RET sing 379 n n C16 H163 RET sing 380 n n C17 H171 RET sing 381 n n C17 H172 RET sing 382 n n C17 H173 RET sing 383 n n C18 H181 RET sing 384 n n C18 H182 RET sing 385 n n C18 H183 RET sing 386 n n C19 H191 RET sing 387 n n C19 H192 RET sing 388 n n C19 H193 RET sing 389 n n C20 H201 RET sing 390 n n C20 H202 RET sing 391 n n C20 H203 RET sing 392 n n # _atom_sites.entry_id 7Q36 _atom_sites.fract_transf_matrix[1][1] 0.024698 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012168 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004284 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LFA A 1 301 1 LFA LFA . C 2 LFA A 1 302 2 LFA LFA . D 2 LFA A 1 303 3 LFA LFA . E 2 LFA A 1 304 4 LFA LFA . F 2 LFA A 1 305 5 LFA LFA . G 2 LFA A 1 306 6 LFA LFA . H 2 LFA A 1 307 7 LFA LFA . I 2 LFA A 1 308 8 LFA LFA . J 2 LFA A 1 309 9 LFA LFA . K 2 LFA A 1 310 10 LFA LFA . L 2 LFA A 1 311 11 LFA LFA . M 2 LFA A 1 312 12 LFA LFA . N 2 LFA A 1 313 13 LFA LFA . O 2 LFA A 1 314 14 LFA LFA . P 2 LFA A 1 315 15 LFA LFA . Q 2 LFA A 1 316 16 LFA LFA . R 2 LFA A 1 317 17 LFA LFA . S 2 LFA A 1 318 18 LFA LFA . T 2 LFA A 1 319 19 LFA LFA . U 2 LFA A 1 320 20 LFA LFA . V 2 LFA A 1 321 21 LFA LFA . W 2 LFA A 1 322 22 LFA LFA . X 2 LFA A 1 323 23 LFA LFA . Y 3 HEX A 1 324 24 HEX HEX . Z 3 HEX A 1 325 25 HEX HEX . AA 3 HEX A 1 326 26 HEX HEX . BA 3 HEX A 1 327 27 HEX HEX . CA 3 HEX A 1 328 28 HEX HEX . DA 4 NA A 1 329 301 NA NA . EA 5 KR A 1 330 1 KR KR . FA 5 KR A 1 331 2 KR KR . GA 5 KR A 1 332 3 KR KR . HA 5 KR A 1 333 4 KR KR . IA 5 KR A 1 334 5 KR KR . JA 5 KR A 1 335 6 KR KR . KA 5 KR A 1 336 7 KR KR . LA 5 KR A 1 337 8 KR KR . MA 5 KR A 1 338 9 KR KR . NA 5 KR A 1 339 10 KR KR . OA 5 KR A 1 340 11 KR KR . PA 6 RET A 1 341 255 RET LYR . QA 7 HOH A 1 401 62 HOH HOH . QA 7 HOH A 2 402 9 HOH HOH . QA 7 HOH A 3 403 59 HOH HOH . QA 7 HOH A 4 404 56 HOH HOH . QA 7 HOH A 5 405 31 HOH HOH . QA 7 HOH A 6 406 26 HOH HOH . QA 7 HOH A 7 407 63 HOH HOH . QA 7 HOH A 8 408 71 HOH HOH . QA 7 HOH A 9 409 79 HOH HOH . QA 7 HOH A 10 410 58 HOH HOH . QA 7 HOH A 11 411 19 HOH HOH . QA 7 HOH A 12 412 57 HOH HOH . QA 7 HOH A 13 413 61 HOH HOH . QA 7 HOH A 14 414 1 HOH HOH . QA 7 HOH A 15 415 69 HOH HOH . QA 7 HOH A 16 416 28 HOH HOH . QA 7 HOH A 17 417 53 HOH HOH . QA 7 HOH A 18 418 22 HOH HOH . QA 7 HOH A 19 419 44 HOH HOH . QA 7 HOH A 20 420 42 HOH HOH . QA 7 HOH A 21 421 14 HOH HOH . QA 7 HOH A 22 422 65 HOH HOH . QA 7 HOH A 23 423 32 HOH HOH . QA 7 HOH A 24 424 77 HOH HOH . QA 7 HOH A 25 425 18 HOH HOH . QA 7 HOH A 26 426 55 HOH HOH . QA 7 HOH A 27 427 16 HOH HOH . QA 7 HOH A 28 428 10 HOH HOH . QA 7 HOH A 29 429 27 HOH HOH . QA 7 HOH A 30 430 36 HOH HOH . QA 7 HOH A 31 431 47 HOH HOH . QA 7 HOH A 32 432 68 HOH HOH . QA 7 HOH A 33 433 67 HOH HOH . QA 7 HOH A 34 434 35 HOH HOH . QA 7 HOH A 35 435 30 HOH HOH . QA 7 HOH A 36 436 52 HOH HOH . QA 7 HOH A 37 437 66 HOH HOH . QA 7 HOH A 38 438 11 HOH HOH . QA 7 HOH A 39 439 2 HOH HOH . QA 7 HOH A 40 440 25 HOH HOH . QA 7 HOH A 41 441 3 HOH HOH . QA 7 HOH A 42 442 46 HOH HOH . QA 7 HOH A 43 443 54 HOH HOH . QA 7 HOH A 44 444 49 HOH HOH . QA 7 HOH A 45 445 70 HOH HOH . QA 7 HOH A 46 446 81 HOH HOH . QA 7 HOH A 47 447 29 HOH HOH . QA 7 HOH A 48 448 7 HOH HOH . QA 7 HOH A 49 449 64 HOH HOH . QA 7 HOH A 50 450 34 HOH HOH . QA 7 HOH A 51 451 12 HOH HOH . QA 7 HOH A 52 452 37 HOH HOH . QA 7 HOH A 53 453 33 HOH HOH . QA 7 HOH A 54 454 8 HOH HOH . QA 7 HOH A 55 455 75 HOH HOH . QA 7 HOH A 56 456 76 HOH HOH . QA 7 HOH A 57 457 78 HOH HOH . QA 7 HOH A 58 458 15 HOH HOH . QA 7 HOH A 59 459 51 HOH HOH . QA 7 HOH A 60 460 6 HOH HOH . QA 7 HOH A 61 461 80 HOH HOH . QA 7 HOH A 62 462 48 HOH HOH . QA 7 HOH A 63 463 13 HOH HOH . QA 7 HOH A 64 464 4 HOH HOH . QA 7 HOH A 65 465 74 HOH HOH . QA 7 HOH A 66 466 40 HOH HOH . QA 7 HOH A 67 467 60 HOH HOH . QA 7 HOH A 68 468 24 HOH HOH . QA 7 HOH A 69 469 20 HOH HOH . QA 7 HOH A 70 470 73 HOH HOH . QA 7 HOH A 71 471 72 HOH HOH . QA 7 HOH A 72 472 39 HOH HOH . QA 7 HOH A 73 473 41 HOH HOH . QA 7 HOH A 74 474 21 HOH HOH . QA 7 HOH A 75 475 43 HOH HOH . QA 7 HOH A 76 476 45 HOH HOH . QA 7 HOH A 77 477 17 HOH HOH . QA 7 HOH A 78 478 23 HOH HOH . QA 7 HOH A 79 479 38 HOH HOH . QA 7 HOH A 80 480 5 HOH HOH . QA 7 HOH A 81 481 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . PA 6 -2.536 25.594 27.146 1 50.96 ? C1 RET 341 A 1 HETATM 2 C C2 RET . . . PA 6 -3.158 26.643 26.218 1 51.84 ? C2 RET 341 A 1 HETATM 3 C C3 RET . . . PA 6 -2.434 27.941 26.22 1 52.3 ? C3 RET 341 A 1 HETATM 4 C C4 RET . . . PA 6 -2.389 28.517 27.628 1 52.21 ? C4 RET 341 A 1 HETATM 5 C C5 RET . . . PA 6 -2.035 27.511 28.685 1 51.03 ? C5 RET 341 A 1 HETATM 6 C C6 RET . . . PA 6 -2.177 26.18 28.505 1 50.85 ? C6 RET 341 A 1 HETATM 7 C C7 RET . . . PA 6 -1.993 25.282 29.62 1 48.37 ? C7 RET 341 A 1 HETATM 8 C C8 RET . . . PA 6 -1.523 24.006 29.58 1 47.74 ? C8 RET 341 A 1 HETATM 9 C C9 RET . . . PA 6 -1.116 23.231 30.666 1 48.57 ? C9 RET 341 A 1 HETATM 10 C C10 RET . . . PA 6 -1.128 21.825 30.569 1 46.2 ? C10 RET 341 A 1 HETATM 11 C C11 RET . . . PA 6 -0.562 20.887 31.395 1 45.47 ? C11 RET 341 A 1 HETATM 12 C C12 RET . . . PA 6 -0.444 19.549 31.132 1 45.97 ? C12 RET 341 A 1 HETATM 13 C C13 RET . . . PA 6 0.076 18.527 31.955 1 45.89 ? C13 RET 341 A 1 HETATM 14 C C14 RET . . . PA 6 0.152 17.254 31.466 1 45.4 ? C14 RET 341 A 1 HETATM 15 C C15 RET . . . PA 6 0.392 16.027 32.306 1 44.95 ? C15 RET 341 A 1 HETATM 16 C C16 RET . . . PA 6 -3.566 24.46 27.303 1 52.75 ? C16 RET 341 A 1 HETATM 17 C C17 RET . . . PA 6 -1.274 25.036 26.462 1 49.94 ? C17 RET 341 A 1 HETATM 18 C C18 RET . . . PA 6 -1.545 28.15 29.954 1 51.31 ? C18 RET 341 A 1 HETATM 19 C C19 RET . . . PA 6 -0.612 23.853 31.929 1 48.31 ? C19 RET 341 A 1 HETATM 20 C C20 RET . . . PA 6 0.501 18.919 33.304 1 45.29 ? C20 RET 341 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #