data_7Q37 # _model_server_result.job_id st66FqwS84jYox8dDq-AOA _model_server_result.datetime_utc '2025-02-17 05:57:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q37 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7Q37 # _exptl.entry_id 7Q37 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.36 _cell.angle_gamma 90 _cell.entry_id 7Q37 _cell.length_a 50.897 _cell.length_b 40.381 _cell.length_c 60.619 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q37 _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C FME 1 A FME 1 1_555 A N GLU 2 A GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale2 A NZ LYS 200 A LYS 200 1_555 B C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.294 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 378 n n C1 C6 RET sing 379 n n C1 C16 RET sing 380 n n C1 C17 RET sing 381 n n C2 C3 RET sing 382 n n C2 H21 RET sing 383 n n C2 H22 RET sing 384 n n C3 C4 RET sing 385 n n C3 H31 RET sing 386 n n C3 H32 RET sing 387 n n C4 C5 RET sing 388 n n C4 H41 RET sing 389 n n C4 H42 RET sing 390 n n C5 C6 RET doub 391 n n C5 C18 RET sing 392 n n C6 C7 RET sing 393 n n C7 C8 RET doub 394 e n C7 H7 RET sing 395 n n C8 C9 RET sing 396 n n C8 H8 RET sing 397 n n C9 C10 RET doub 398 e n C9 C19 RET sing 399 n n C10 C11 RET sing 400 n n C10 H10 RET sing 401 n n C11 C12 RET doub 402 e n C11 H11 RET sing 403 n n C12 C13 RET sing 404 n n C12 H12 RET sing 405 n n C13 C14 RET doub 406 e n C13 C20 RET sing 407 n n C14 C15 RET sing 408 n n C14 H14 RET sing 409 n n C15 O1 RET doub 410 n n C15 H15 RET sing 411 n n C16 H161 RET sing 412 n n C16 H162 RET sing 413 n n C16 H163 RET sing 414 n n C17 H171 RET sing 415 n n C17 H172 RET sing 416 n n C17 H173 RET sing 417 n n C18 H181 RET sing 418 n n C18 H182 RET sing 419 n n C18 H183 RET sing 420 n n C19 H191 RET sing 421 n n C19 H192 RET sing 422 n n C19 H193 RET sing 423 n n C20 H201 RET sing 424 n n C20 H202 RET sing 425 n n C20 H203 RET sing 426 n n # _atom_sites.entry_id 7Q37 _atom_sites.fract_transf_matrix[1][1] 0.019648 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003946 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024764 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 LFA A 1 302 1 LFA LFA . D 3 LFA A 1 303 2 LFA LFA . E 3 LFA A 1 304 3 LFA LFA . F 3 LFA A 1 305 4 LFA LFA . G 3 LFA A 1 306 5 LFA LFA . H 3 LFA A 1 307 6 LFA LFA . I 3 LFA A 1 308 7 LFA LFA . J 3 LFA A 1 309 8 LFA LFA . K 3 LFA A 1 310 9 LFA LFA . L 3 LFA A 1 311 10 LFA LFA . M 3 LFA A 1 312 11 LFA LFA . N 3 LFA A 1 313 12 LFA LFA . O 3 LFA A 1 314 13 LFA LFA . P 3 LFA A 1 315 14 LFA LFA . Q 4 HEX A 1 316 15 HEX HEX . R 4 HEX A 1 317 16 HEX HEX . S 4 HEX A 1 318 17 HEX HEX . T 4 HEX A 1 319 18 HEX HEX . U 4 HEX A 1 320 19 HEX HEX . V 5 KR A 1 321 1 KR KR . W 5 KR A 1 322 2 KR KR . X 5 KR A 1 323 3 KR KR . Y 5 KR A 1 324 4 KR KR . Z 5 KR A 1 325 5 KR KR . AA 5 KR A 1 326 6 KR KR . BA 5 KR A 1 327 7 KR KR . CA 5 KR A 1 328 8 KR KR . DA 5 KR A 1 329 9 KR KR . EA 5 KR A 1 330 10 KR KR . FA 5 KR A 1 331 11 KR KR . GA 5 KR A 1 332 12 KR KR . HA 5 KR A 1 333 13 KR KR . IA 5 KR A 1 334 14 KR KR . JA 5 KR A 1 335 15 KR KR . KA 5 KR A 1 336 16 KR KR . LA 5 KR A 1 337 17 KR KR . MA 5 KR A 1 338 18 KR KR . NA 5 KR A 1 339 19 KR KR . OA 6 HOH A 1 401 56 HOH HOH . OA 6 HOH A 2 402 4 HOH HOH . OA 6 HOH A 3 403 88 HOH HOH . OA 6 HOH A 4 404 57 HOH HOH . OA 6 HOH A 5 405 31 HOH HOH . OA 6 HOH A 6 406 44 HOH HOH . OA 6 HOH A 7 407 33 HOH HOH . OA 6 HOH A 8 408 23 HOH HOH . OA 6 HOH A 9 409 37 HOH HOH . OA 6 HOH A 10 410 98 HOH HOH . OA 6 HOH A 11 411 53 HOH HOH . OA 6 HOH A 12 412 54 HOH HOH . OA 6 HOH A 13 413 2 HOH HOH . OA 6 HOH A 14 414 1 HOH HOH . OA 6 HOH A 15 415 6 HOH HOH . OA 6 HOH A 16 416 40 HOH HOH . OA 6 HOH A 17 417 75 HOH HOH . OA 6 HOH A 18 418 5 HOH HOH . OA 6 HOH A 19 419 69 HOH HOH . OA 6 HOH A 20 420 30 HOH HOH . OA 6 HOH A 21 421 28 HOH HOH . OA 6 HOH A 22 422 64 HOH HOH . OA 6 HOH A 23 423 52 HOH HOH . OA 6 HOH A 24 424 14 HOH HOH . OA 6 HOH A 25 425 10 HOH HOH . OA 6 HOH A 26 426 29 HOH HOH . OA 6 HOH A 27 427 22 HOH HOH . OA 6 HOH A 28 428 92 HOH HOH . OA 6 HOH A 29 429 38 HOH HOH . OA 6 HOH A 30 430 9 HOH HOH . OA 6 HOH A 31 431 16 HOH HOH . OA 6 HOH A 32 432 34 HOH HOH . OA 6 HOH A 33 433 91 HOH HOH . OA 6 HOH A 34 434 81 HOH HOH . OA 6 HOH A 35 435 95 HOH HOH . OA 6 HOH A 36 436 42 HOH HOH . OA 6 HOH A 37 437 11 HOH HOH . OA 6 HOH A 38 438 32 HOH HOH . OA 6 HOH A 39 439 36 HOH HOH . OA 6 HOH A 40 440 24 HOH HOH . OA 6 HOH A 41 441 47 HOH HOH . OA 6 HOH A 42 442 35 HOH HOH . OA 6 HOH A 43 443 74 HOH HOH . OA 6 HOH A 44 444 59 HOH HOH . OA 6 HOH A 45 445 8 HOH HOH . OA 6 HOH A 46 446 70 HOH HOH . OA 6 HOH A 47 447 46 HOH HOH . OA 6 HOH A 48 448 72 HOH HOH . OA 6 HOH A 49 449 20 HOH HOH . OA 6 HOH A 50 450 25 HOH HOH . OA 6 HOH A 51 451 13 HOH HOH . OA 6 HOH A 52 452 51 HOH HOH . OA 6 HOH A 53 453 90 HOH HOH . OA 6 HOH A 54 454 94 HOH HOH . OA 6 HOH A 55 455 41 HOH HOH . OA 6 HOH A 56 456 50 HOH HOH . OA 6 HOH A 57 457 79 HOH HOH . OA 6 HOH A 58 458 18 HOH HOH . OA 6 HOH A 59 459 12 HOH HOH . OA 6 HOH A 60 460 65 HOH HOH . OA 6 HOH A 61 461 26 HOH HOH . OA 6 HOH A 62 462 7 HOH HOH . OA 6 HOH A 63 463 77 HOH HOH . OA 6 HOH A 64 464 58 HOH HOH . OA 6 HOH A 65 465 3 HOH HOH . OA 6 HOH A 66 466 48 HOH HOH . OA 6 HOH A 67 467 85 HOH HOH . OA 6 HOH A 68 468 84 HOH HOH . OA 6 HOH A 69 469 27 HOH HOH . OA 6 HOH A 70 470 21 HOH HOH . OA 6 HOH A 71 471 66 HOH HOH . OA 6 HOH A 72 472 60 HOH HOH . OA 6 HOH A 73 473 45 HOH HOH . OA 6 HOH A 74 474 68 HOH HOH . OA 6 HOH A 75 475 49 HOH HOH . OA 6 HOH A 76 476 15 HOH HOH . OA 6 HOH A 77 477 96 HOH HOH . OA 6 HOH A 78 478 62 HOH HOH . OA 6 HOH A 79 479 97 HOH HOH . OA 6 HOH A 80 480 73 HOH HOH . OA 6 HOH A 81 481 61 HOH HOH . OA 6 HOH A 82 482 63 HOH HOH . OA 6 HOH A 83 483 71 HOH HOH . OA 6 HOH A 84 484 93 HOH HOH . OA 6 HOH A 85 485 17 HOH HOH . OA 6 HOH A 86 486 86 HOH HOH . OA 6 HOH A 87 487 39 HOH HOH . OA 6 HOH A 88 488 82 HOH HOH . OA 6 HOH A 89 489 43 HOH HOH . OA 6 HOH A 90 490 67 HOH HOH . OA 6 HOH A 91 491 83 HOH HOH . OA 6 HOH A 92 492 55 HOH HOH . OA 6 HOH A 93 493 99 HOH HOH . OA 6 HOH A 94 494 76 HOH HOH . OA 6 HOH A 95 495 87 HOH HOH . OA 6 HOH A 96 496 89 HOH HOH . OA 6 HOH A 97 497 80 HOH HOH . OA 6 HOH A 98 498 78 HOH HOH . OA 6 HOH A 99 499 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 24.067 8.809 16.949 1 26.85 ? C1 RET 301 A 1 HETATM 2 C C2 RET . . . B 2 24.808 10.124 17.193 1 25.31 ? C2 RET 301 A 1 HETATM 3 C C3 RET . . . B 2 24.385 10.819 18.414 1 26.26 ? C3 RET 301 A 1 HETATM 4 C C4 RET . . . B 2 22.902 11.151 18.332 1 26.09 ? C4 RET 301 A 1 HETATM 5 C C5 RET . . . B 2 22.067 10.116 17.621 1 26.74 ? C5 RET 301 A 1 HETATM 6 C C6 RET . . . B 2 22.559 8.968 17.107 1 25.31 ? C6 RET 301 A 1 HETATM 7 C C7 RET . . . B 2 21.63 7.895 16.682 1 23.82 ? C7 RET 301 A 1 HETATM 8 C C8 RET . . . B 2 21.933 6.606 16.295 1 23.56 ? C8 RET 301 A 1 HETATM 9 C C9 RET . . . B 2 21.042 5.566 15.982 1 24.02 ? C9 RET 301 A 1 HETATM 10 C C10 RET . . . B 2 21.469 4.239 15.673 1 23.56 ? C10 RET 301 A 1 HETATM 11 C C11 RET . . . B 2 20.692 3.108 15.402 1 24.14 ? C11 RET 301 A 1 HETATM 12 C C12 RET . . . B 2 21.14 1.818 15.177 1 24.33 ? C12 RET 301 A 1 HETATM 13 C C13 RET . . . B 2 20.424 0.674 14.867 1 23.86 ? C13 RET 301 A 1 HETATM 14 C C14 RET . . . B 2 21.123 -0.487 14.619 1 26.38 ? C14 RET 301 A 1 HETATM 15 C C15 RET . . . B 2 20.581 -1.772 14.314 1 28.51 ? C15 RET 301 A 1 HETATM 16 C C16 RET . . . B 2 24.386 8.327 15.52 1 26.36 ? C16 RET 301 A 1 HETATM 17 C C17 RET . . . B 2 24.623 7.79 17.964 1 26.88 ? C17 RET 301 A 1 HETATM 18 C C18 RET . . . B 2 20.606 10.491 17.605 1 25.23 ? C18 RET 301 A 1 HETATM 19 C C19 RET . . . B 2 19.555 5.805 16.05 1 27.1 ? C19 RET 301 A 1 HETATM 20 C C20 RET . . . B 2 18.955 0.748 14.91 1 26.34 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #