data_7Q38 # _model_server_result.job_id ujBb86PY9zmTe2PMqWmofg _model_server_result.datetime_utc '2024-11-13 04:52:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q38 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":312}' # _entry.id 7Q38 # _exptl.entry_id 7Q38 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Q38 _cell.length_a 115.657 _cell.length_b 119.245 _cell.length_c 36.393 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q38 _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 217 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.301 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 357 n n C10 C9 OLC doub 358 n n C10 C11 OLC sing 359 n n C9 C8 OLC sing 360 n n C17 C16 OLC sing 361 z n C11 C12 OLC sing 362 n n C8 C7 OLC sing 363 n n C24 C22 OLC sing 364 n n C24 O25 OLC sing 365 n n C16 C15 OLC sing 366 n n C12 C13 OLC sing 367 n n C7 C6 OLC sing 368 n n C15 C14 OLC sing 369 n n C13 C14 OLC sing 370 n n C6 C5 OLC sing 371 n n C5 C4 OLC sing 372 n n C4 C3 OLC sing 373 n n C3 C2 OLC sing 374 n n C2 C1 OLC sing 375 n n C21 C22 OLC sing 376 n n C21 O20 OLC sing 377 n n C1 O19 OLC doub 378 n n C1 O20 OLC sing 379 n n C22 O23 OLC sing 380 n n C18 H18 OLC sing 381 n n C18 H18A OLC sing 382 n n C18 H18B OLC sing 383 n n C10 H10 OLC sing 384 n n C9 H9 OLC sing 385 n n C17 H17 OLC sing 386 n n C17 H17A OLC sing 387 n n C11 H11 OLC sing 388 n n C11 H11A OLC sing 389 n n C8 H8 OLC sing 390 n n C8 H8A OLC sing 391 n n C24 H24 OLC sing 392 n n C24 H24A OLC sing 393 n n C16 H16 OLC sing 394 n n C16 H16A OLC sing 395 n n C12 H12 OLC sing 396 n n C12 H12A OLC sing 397 n n C7 H7 OLC sing 398 n n C7 H7A OLC sing 399 n n C15 H15 OLC sing 400 n n C15 H15A OLC sing 401 n n C13 H13 OLC sing 402 n n C13 H13A OLC sing 403 n n C6 H6 OLC sing 404 n n C6 H6A OLC sing 405 n n C14 H14 OLC sing 406 n n C14 H14A OLC sing 407 n n C5 H5 OLC sing 408 n n C5 H5A OLC sing 409 n n C4 H4 OLC sing 410 n n C4 H4A OLC sing 411 n n C3 H3 OLC sing 412 n n C3 H3A OLC sing 413 n n C2 H2 OLC sing 414 n n C2 H2A OLC sing 415 n n C21 H21 OLC sing 416 n n C21 H21A OLC sing 417 n n C22 H22 OLC sing 418 n n O25 HO25 OLC sing 419 n n O23 HO23 OLC sing 420 n n # _atom_sites.entry_id 7Q38 _atom_sites.fract_transf_matrix[1][1] 0.008646 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008386 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027478 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 LFA A 1 302 1 LFA LFA . D 3 LFA A 1 303 2 LFA LFA . E 3 LFA A 1 304 3 LFA LFA . F 3 LFA A 1 305 4 LFA LFA . G 3 LFA A 1 306 5 LFA LFA . H 3 LFA A 1 307 6 LFA LFA . I 3 LFA A 1 308 7 LFA LFA . J 3 LFA A 1 309 8 LFA LFA . K 3 LFA A 1 310 9 LFA LFA . L 3 LFA A 1 311 10 LFA LFA . M 4 OLC A 1 312 11 OLC OLC . N 5 OLA A 1 313 12 OLA OLA . O 5 OLA A 1 314 13 OLA OLA . P 5 OLA A 1 315 14 OLA OLA . Q 6 HEX A 1 316 15 HEX HEX . R 6 HEX A 1 317 16 HEX HEX . S 6 HEX A 1 318 17 HEX HEX . T 6 HEX A 1 319 18 HEX HEX . U 7 SO4 A 1 320 19 SO4 SO4 . V 7 SO4 A 1 321 20 SO4 SO4 . W 8 AR A 1 322 1 AR AR . X 8 AR A 1 323 2 AR AR . Y 8 AR A 1 324 3 AR AR . Z 8 AR A 1 325 4 AR AR . AA 8 AR A 1 326 5 AR AR . BA 8 AR A 1 327 6 AR AR . CA 8 AR A 1 328 7 AR AR . DA 8 AR A 1 329 8 AR AR . EA 8 AR A 1 330 9 AR AR . FA 8 AR A 1 331 10 AR AR . GA 8 AR A 1 332 11 AR AR . HA 8 AR A 1 333 12 AR AR . IA 8 AR A 1 334 13 AR AR . JA 8 AR A 1 335 14 AR AR . KA 8 AR A 1 336 15 AR AR . LA 8 AR A 1 337 16 AR AR . MA 8 AR A 1 338 17 AR AR . NA 8 AR A 1 339 18 AR AR . OA 8 AR A 1 340 19 AR AR . PA 8 AR A 1 341 20 AR AR . QA 8 AR A 1 342 21 AR AR . RA 8 AR A 1 343 22 AR AR . SA 8 AR A 1 344 23 AR AR . TA 8 AR A 1 345 24 AR AR . UA 8 AR A 1 346 25 AR AR . VA 8 AR A 1 347 26 AR AR . WA 8 AR A 1 348 27 AR AR . XA 8 AR A 1 349 28 AR AR . YA 8 AR A 1 350 29 AR AR . ZA 8 AR A 1 351 30 AR AR . AB 8 AR A 1 352 31 AR AR . BB 8 AR A 1 353 32 AR AR . CB 8 AR A 1 354 33 AR AR . DB 8 AR A 1 355 34 AR AR . EB 8 AR A 1 356 35 AR AR . FB 8 AR A 1 357 36 AR AR . GB 8 AR A 1 358 37 AR AR . HB 8 AR A 1 359 38 AR AR . IB 8 AR A 1 360 39 AR AR . JB 8 AR A 1 361 40 AR AR . KB 8 AR A 1 362 41 AR AR . LB 8 AR A 1 363 42 AR AR . MB 8 AR A 1 364 43 AR AR . NB 8 AR A 1 365 44 AR AR . OB 8 AR A 1 366 45 AR AR . PB 8 AR A 1 367 46 AR AR . QB 8 AR A 1 368 47 AR AR . RB 9 HOH A 1 401 72 HOH HOH . RB 9 HOH A 2 402 51 HOH HOH . RB 9 HOH A 3 403 14 HOH HOH . RB 9 HOH A 4 404 67 HOH HOH . RB 9 HOH A 5 405 73 HOH HOH . RB 9 HOH A 6 406 80 HOH HOH . RB 9 HOH A 7 407 29 HOH HOH . RB 9 HOH A 8 408 81 HOH HOH . RB 9 HOH A 9 409 5 HOH HOH . RB 9 HOH A 10 410 13 HOH HOH . RB 9 HOH A 11 411 90 HOH HOH . RB 9 HOH A 12 412 62 HOH HOH . RB 9 HOH A 13 413 64 HOH HOH . RB 9 HOH A 14 414 22 HOH HOH . RB 9 HOH A 15 415 20 HOH HOH . RB 9 HOH A 16 416 16 HOH HOH . RB 9 HOH A 17 417 17 HOH HOH . RB 9 HOH A 18 418 10 HOH HOH . RB 9 HOH A 19 419 7 HOH HOH . RB 9 HOH A 20 420 77 HOH HOH . RB 9 HOH A 21 421 101 HOH HOH . RB 9 HOH A 22 422 58 HOH HOH . RB 9 HOH A 23 423 89 HOH HOH . RB 9 HOH A 24 424 37 HOH HOH . RB 9 HOH A 25 425 25 HOH HOH . RB 9 HOH A 26 426 34 HOH HOH . RB 9 HOH A 27 427 39 HOH HOH . RB 9 HOH A 28 428 55 HOH HOH . RB 9 HOH A 29 429 100 HOH HOH . RB 9 HOH A 30 430 3 HOH HOH . RB 9 HOH A 31 431 88 HOH HOH . RB 9 HOH A 32 432 87 HOH HOH . RB 9 HOH A 33 433 12 HOH HOH . RB 9 HOH A 34 434 91 HOH HOH . RB 9 HOH A 35 435 38 HOH HOH . RB 9 HOH A 36 436 82 HOH HOH . RB 9 HOH A 37 437 50 HOH HOH . RB 9 HOH A 38 438 69 HOH HOH . RB 9 HOH A 39 439 92 HOH HOH . RB 9 HOH A 40 440 11 HOH HOH . RB 9 HOH A 41 441 41 HOH HOH . RB 9 HOH A 42 442 70 HOH HOH . RB 9 HOH A 43 443 54 HOH HOH . RB 9 HOH A 44 444 74 HOH HOH . RB 9 HOH A 45 445 36 HOH HOH . RB 9 HOH A 46 446 68 HOH HOH . RB 9 HOH A 47 447 23 HOH HOH . RB 9 HOH A 48 448 35 HOH HOH . RB 9 HOH A 49 449 15 HOH HOH . RB 9 HOH A 50 450 114 HOH HOH . RB 9 HOH A 51 451 6 HOH HOH . RB 9 HOH A 52 452 27 HOH HOH . RB 9 HOH A 53 453 1 HOH HOH . RB 9 HOH A 54 454 33 HOH HOH . RB 9 HOH A 55 455 75 HOH HOH . RB 9 HOH A 56 456 84 HOH HOH . RB 9 HOH A 57 457 86 HOH HOH . RB 9 HOH A 58 458 2 HOH HOH . RB 9 HOH A 59 459 8 HOH HOH . RB 9 HOH A 60 460 43 HOH HOH . RB 9 HOH A 61 461 71 HOH HOH . RB 9 HOH A 62 462 4 HOH HOH . RB 9 HOH A 63 463 21 HOH HOH . RB 9 HOH A 64 464 9 HOH HOH . RB 9 HOH A 65 465 79 HOH HOH . RB 9 HOH A 66 466 60 HOH HOH . RB 9 HOH A 67 467 99 HOH HOH . RB 9 HOH A 68 468 19 HOH HOH . RB 9 HOH A 69 469 102 HOH HOH . RB 9 HOH A 70 470 76 HOH HOH . RB 9 HOH A 71 471 32 HOH HOH . RB 9 HOH A 72 472 116 HOH HOH . RB 9 HOH A 73 473 31 HOH HOH . RB 9 HOH A 74 474 96 HOH HOH . RB 9 HOH A 75 475 40 HOH HOH . RB 9 HOH A 76 476 26 HOH HOH . RB 9 HOH A 77 477 98 HOH HOH . RB 9 HOH A 78 478 115 HOH HOH . RB 9 HOH A 79 479 83 HOH HOH . RB 9 HOH A 80 480 65 HOH HOH . RB 9 HOH A 81 481 63 HOH HOH . RB 9 HOH A 82 482 117 HOH HOH . RB 9 HOH A 83 483 78 HOH HOH . RB 9 HOH A 84 484 108 HOH HOH . RB 9 HOH A 85 485 95 HOH HOH . RB 9 HOH A 86 486 30 HOH HOH . RB 9 HOH A 87 487 44 HOH HOH . RB 9 HOH A 88 488 107 HOH HOH . RB 9 HOH A 89 489 112 HOH HOH . RB 9 HOH A 90 490 45 HOH HOH . RB 9 HOH A 91 491 46 HOH HOH . RB 9 HOH A 92 492 52 HOH HOH . RB 9 HOH A 93 493 42 HOH HOH . RB 9 HOH A 94 494 24 HOH HOH . RB 9 HOH A 95 495 110 HOH HOH . RB 9 HOH A 96 496 61 HOH HOH . RB 9 HOH A 97 497 48 HOH HOH . RB 9 HOH A 98 498 93 HOH HOH . RB 9 HOH A 99 499 119 HOH HOH . RB 9 HOH A 100 500 47 HOH HOH . RB 9 HOH A 101 501 85 HOH HOH . RB 9 HOH A 102 502 97 HOH HOH . RB 9 HOH A 103 503 57 HOH HOH . RB 9 HOH A 104 504 104 HOH HOH . RB 9 HOH A 105 505 106 HOH HOH . RB 9 HOH A 106 506 105 HOH HOH . RB 9 HOH A 107 507 18 HOH HOH . RB 9 HOH A 108 508 113 HOH HOH . RB 9 HOH A 109 509 53 HOH HOH . RB 9 HOH A 110 510 111 HOH HOH . RB 9 HOH A 111 511 59 HOH HOH . RB 9 HOH A 112 512 56 HOH HOH . RB 9 HOH A 113 513 118 HOH HOH . RB 9 HOH A 114 514 28 HOH HOH . RB 9 HOH A 115 515 49 HOH HOH . RB 9 HOH A 116 516 103 HOH HOH . RB 9 HOH A 117 517 66 HOH HOH . RB 9 HOH A 118 518 109 HOH HOH . RB 9 HOH A 119 519 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . M 4 -21.176 -28.125 -8.13 0.84 49.69 ? C10 OLC 312 A 1 HETATM 2 C C9 OLC . . . M 4 -21.451 -29.245 -7.466 0.84 52.54 ? C9 OLC 312 A 1 HETATM 3 C C11 OLC . . . M 4 -20.679 -26.887 -7.413 0.84 47.91 ? C11 OLC 312 A 1 HETATM 4 C C8 OLC . . . M 4 -21.325 -29.358 -5.949 0.84 54.6 ? C8 OLC 312 A 1 HETATM 5 C C12 OLC . . . M 4 -20.493 -25.755 -8.392 0.84 45.99 ? C12 OLC 312 A 1 HETATM 6 C C7 OLC . . . M 4 -22.605 -30.02 -5.385 0.84 55.11 ? C7 OLC 312 A 1 HETATM 7 C C15 OLC . . . M 4 -18.798 -22.289 -8.632 0.84 42.11 ? C15 OLC 312 A 1 HETATM 8 C C13 OLC . . . M 4 -19.713 -24.58 -7.826 0.84 44.8 ? C13 OLC 312 A 1 HETATM 9 C C6 OLC . . . M 4 -23.015 -29.647 -3.949 0.84 48.34 ? C6 OLC 312 A 1 HETATM 10 C C14 OLC . . . M 4 -19.231 -23.716 -8.973 0.84 44.12 ? C14 OLC 312 A 1 HETATM 11 C C5 OLC . . . M 4 -24.088 -30.64 -3.51 0.84 48.37 ? C5 OLC 312 A 1 HETATM 12 C C4 OLC . . . M 4 -25.225 -30.016 -2.694 0.84 53.42 ? C4 OLC 312 A 1 HETATM 13 C C3 OLC . . . M 4 -25.785 -30.956 -1.617 0.84 50.81 ? C3 OLC 312 A 1 HETATM 14 C C2 OLC . . . M 4 -25.505 -30.425 -0.221 0.84 51.8 ? C2 OLC 312 A 1 HETATM 15 C C21 OLC . . . M 4 -27.968 -30.955 1.875 0.84 52.1 ? C21 OLC 312 A 1 HETATM 16 C C1 OLC . . . M 4 -26.08 -31.289 0.87 0.84 50.27 ? C1 OLC 312 A 1 HETATM 17 C C22 OLC . . . M 4 -27.375 -31.331 3.244 0.84 58.72 ? C22 OLC 312 A 1 HETATM 18 O O19 OLC . . . M 4 -25.61 -31.689 1.943 0.84 32.01 ? O19 OLC 312 A 1 HETATM 19 O O23 OLC . . . M 4 -28.319 -31.01 4.311 0.84 45.16 ? O23 OLC 312 A 1 HETATM 20 O O20 OLC . . . M 4 -27.44 -31.585 0.74 0.84 62.6 ? O20 OLC 312 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 20 #