data_7Q3F # _model_server_result.job_id jOIHoZtuYNQ_zWMj7R5obQ _model_server_result.datetime_utc '2024-10-19 03:51:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q3f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7Q3F # _exptl.entry_id 7Q3F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 509.601 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[[11-ethanoyl-4-(furan-2-ylmethyl)-3-oxidanylidene-8-thia-4,6,11-triazatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),5-trien-5-yl]sulfanyl]-~{N}-(2-methylpyridin-3-yl)ethanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Q3F _cell.length_a 43.205 _cell.length_b 48.717 _cell.length_c 61.584 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q3F _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H23 N5 O4 S2' _chem_comp.formula_weight 509.601 _chem_comp.id 8M6 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[[11-ethanoyl-4-(furan-2-ylmethyl)-3-oxidanylidene-8-thia-4,6,11-triazatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),5-trien-5-yl]sulfanyl]-~{N}-(2-methylpyridin-3-yl)ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C22 8M6 doub 1 n y C21 N5 8M6 sing 2 n y C22 C23 8M6 sing 3 n y N5 C20 8M6 doub 4 n y O3 C18 8M6 doub 5 n n C23 C19 8M6 doub 6 n y C20 C19 8M6 sing 7 n y C20 C24 8M6 sing 8 n n C19 N4 8M6 sing 9 n n C18 N4 8M6 sing 10 n n C18 C17 8M6 sing 11 n n C15 C16 8M6 sing 12 n y C15 C14 8M6 doub 13 n y C16 C13 8M6 doub 14 n y S2 C17 8M6 sing 15 n n S2 C1 8M6 sing 16 n n C14 O2 8M6 sing 17 n y C13 O2 8M6 sing 18 n y C13 C12 8M6 sing 19 n n C1 N1 8M6 doub 20 n n C1 N2 8M6 sing 21 n n N1 C2 8M6 sing 22 n n C12 N2 8M6 sing 23 n n N2 C4 8M6 sing 24 n n C2 S1 8M6 sing 25 n y C2 C3 8M6 doub 26 n y S1 C5 8M6 sing 27 n y C4 C3 8M6 sing 28 n n C4 O4 8M6 doub 29 n n C3 C6 8M6 sing 30 n y C5 C6 8M6 doub 31 n y C5 C7 8M6 sing 32 n n C6 C9 8M6 sing 33 n n C7 N3 8M6 sing 34 n n C9 C8 8M6 sing 35 n n O1 C10 8M6 doub 36 n n N3 C10 8M6 sing 37 n n N3 C8 8M6 sing 38 n n C10 C11 8M6 sing 39 n n C7 H1 8M6 sing 40 n n C7 H2 8M6 sing 41 n n C8 H3 8M6 sing 42 n n C8 H4 8M6 sing 43 n n C15 H5 8M6 sing 44 n n C17 H6 8M6 sing 45 n n C17 H7 8M6 sing 46 n n C21 H8 8M6 sing 47 n n C22 H9 8M6 sing 48 n n C24 H10 8M6 sing 49 n n C24 H11 8M6 sing 50 n n C24 H12 8M6 sing 51 n n C9 H13 8M6 sing 52 n n C9 H14 8M6 sing 53 n n C11 H15 8M6 sing 54 n n C11 H16 8M6 sing 55 n n C11 H17 8M6 sing 56 n n C12 H18 8M6 sing 57 n n C12 H19 8M6 sing 58 n n C14 H20 8M6 sing 59 n n C16 H21 8M6 sing 60 n n N4 H22 8M6 sing 61 n n C23 H23 8M6 sing 62 n n # _atom_sites.entry_id 7Q3F _atom_sites.fract_transf_matrix[1][1] 0.023145 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020527 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8M6 A 1 501 501 8M6 LIG . C 3 HOH A 1 601 71 HOH HOH . C 3 HOH A 2 602 85 HOH HOH . C 3 HOH A 3 603 128 HOH HOH . C 3 HOH A 4 604 80 HOH HOH . C 3 HOH A 5 605 140 HOH HOH . C 3 HOH A 6 606 114 HOH HOH . C 3 HOH A 7 607 116 HOH HOH . C 3 HOH A 8 608 101 HOH HOH . C 3 HOH A 9 609 31 HOH HOH . C 3 HOH A 10 610 58 HOH HOH . C 3 HOH A 11 611 1 HOH HOH . C 3 HOH A 12 612 157 HOH HOH . C 3 HOH A 13 613 126 HOH HOH . C 3 HOH A 14 614 112 HOH HOH . C 3 HOH A 15 615 62 HOH HOH . C 3 HOH A 16 616 21 HOH HOH . C 3 HOH A 17 617 94 HOH HOH . C 3 HOH A 18 618 70 HOH HOH . C 3 HOH A 19 619 26 HOH HOH . C 3 HOH A 20 620 159 HOH HOH . C 3 HOH A 21 621 44 HOH HOH . C 3 HOH A 22 622 9 HOH HOH . C 3 HOH A 23 623 87 HOH HOH . C 3 HOH A 24 624 43 HOH HOH . C 3 HOH A 25 625 106 HOH HOH . C 3 HOH A 26 626 92 HOH HOH . C 3 HOH A 27 627 36 HOH HOH . C 3 HOH A 28 628 67 HOH HOH . C 3 HOH A 29 629 60 HOH HOH . C 3 HOH A 30 630 52 HOH HOH . C 3 HOH A 31 631 17 HOH HOH . C 3 HOH A 32 632 56 HOH HOH . C 3 HOH A 33 633 34 HOH HOH . C 3 HOH A 34 634 147 HOH HOH . C 3 HOH A 35 635 4 HOH HOH . C 3 HOH A 36 636 13 HOH HOH . C 3 HOH A 37 637 65 HOH HOH . C 3 HOH A 38 638 158 HOH HOH . C 3 HOH A 39 639 75 HOH HOH . C 3 HOH A 40 640 86 HOH HOH . C 3 HOH A 41 641 29 HOH HOH . C 3 HOH A 42 642 18 HOH HOH . C 3 HOH A 43 643 49 HOH HOH . C 3 HOH A 44 644 66 HOH HOH . C 3 HOH A 45 645 6 HOH HOH . C 3 HOH A 46 646 156 HOH HOH . C 3 HOH A 47 647 91 HOH HOH . C 3 HOH A 48 648 123 HOH HOH . C 3 HOH A 49 649 7 HOH HOH . C 3 HOH A 50 650 2 HOH HOH . C 3 HOH A 51 651 59 HOH HOH . C 3 HOH A 52 652 50 HOH HOH . C 3 HOH A 53 653 41 HOH HOH . C 3 HOH A 54 654 105 HOH HOH . C 3 HOH A 55 655 48 HOH HOH . C 3 HOH A 56 656 54 HOH HOH . C 3 HOH A 57 657 30 HOH HOH . C 3 HOH A 58 658 38 HOH HOH . C 3 HOH A 59 659 20 HOH HOH . C 3 HOH A 60 660 88 HOH HOH . C 3 HOH A 61 661 46 HOH HOH . C 3 HOH A 62 662 35 HOH HOH . C 3 HOH A 63 663 110 HOH HOH . C 3 HOH A 64 664 74 HOH HOH . C 3 HOH A 65 665 63 HOH HOH . C 3 HOH A 66 666 120 HOH HOH . C 3 HOH A 67 667 14 HOH HOH . C 3 HOH A 68 668 8 HOH HOH . C 3 HOH A 69 669 24 HOH HOH . C 3 HOH A 70 670 22 HOH HOH . C 3 HOH A 71 671 10 HOH HOH . C 3 HOH A 72 672 97 HOH HOH . C 3 HOH A 73 673 132 HOH HOH . C 3 HOH A 74 674 11 HOH HOH . C 3 HOH A 75 675 64 HOH HOH . C 3 HOH A 76 676 33 HOH HOH . C 3 HOH A 77 677 107 HOH HOH . C 3 HOH A 78 678 144 HOH HOH . C 3 HOH A 79 679 19 HOH HOH . C 3 HOH A 80 680 108 HOH HOH . C 3 HOH A 81 681 100 HOH HOH . C 3 HOH A 82 682 109 HOH HOH . C 3 HOH A 83 683 111 HOH HOH . C 3 HOH A 84 684 99 HOH HOH . C 3 HOH A 85 685 5 HOH HOH . C 3 HOH A 86 686 16 HOH HOH . C 3 HOH A 87 687 47 HOH HOH . C 3 HOH A 88 688 3 HOH HOH . C 3 HOH A 89 689 55 HOH HOH . C 3 HOH A 90 690 83 HOH HOH . C 3 HOH A 91 691 84 HOH HOH . C 3 HOH A 92 692 25 HOH HOH . C 3 HOH A 93 693 12 HOH HOH . C 3 HOH A 94 694 28 HOH HOH . C 3 HOH A 95 695 27 HOH HOH . C 3 HOH A 96 696 72 HOH HOH . C 3 HOH A 97 697 82 HOH HOH . C 3 HOH A 98 698 40 HOH HOH . C 3 HOH A 99 699 15 HOH HOH . C 3 HOH A 100 700 138 HOH HOH . C 3 HOH A 101 701 98 HOH HOH . C 3 HOH A 102 702 136 HOH HOH . C 3 HOH A 103 703 151 HOH HOH . C 3 HOH A 104 704 76 HOH HOH . C 3 HOH A 105 705 124 HOH HOH . C 3 HOH A 106 706 57 HOH HOH . C 3 HOH A 107 707 51 HOH HOH . C 3 HOH A 108 708 154 HOH HOH . C 3 HOH A 109 709 122 HOH HOH . C 3 HOH A 110 710 37 HOH HOH . C 3 HOH A 111 711 81 HOH HOH . C 3 HOH A 112 712 61 HOH HOH . C 3 HOH A 113 713 103 HOH HOH . C 3 HOH A 114 714 73 HOH HOH . C 3 HOH A 115 715 68 HOH HOH . C 3 HOH A 116 716 89 HOH HOH . C 3 HOH A 117 717 113 HOH HOH . C 3 HOH A 118 718 121 HOH HOH . C 3 HOH A 119 719 69 HOH HOH . C 3 HOH A 120 720 77 HOH HOH . C 3 HOH A 121 721 53 HOH HOH . C 3 HOH A 122 722 104 HOH HOH . C 3 HOH A 123 723 32 HOH HOH . C 3 HOH A 124 724 118 HOH HOH . C 3 HOH A 125 725 131 HOH HOH . C 3 HOH A 126 726 93 HOH HOH . C 3 HOH A 127 727 115 HOH HOH . C 3 HOH A 128 728 90 HOH HOH . C 3 HOH A 129 729 96 HOH HOH . C 3 HOH A 130 730 23 HOH HOH . C 3 HOH A 131 731 39 HOH HOH . C 3 HOH A 132 732 130 HOH HOH . C 3 HOH A 133 733 146 HOH HOH . C 3 HOH A 134 734 155 HOH HOH . C 3 HOH A 135 735 95 HOH HOH . C 3 HOH A 136 736 42 HOH HOH . C 3 HOH A 137 737 45 HOH HOH . C 3 HOH A 138 738 152 HOH HOH . C 3 HOH A 139 739 79 HOH HOH . C 3 HOH A 140 740 102 HOH HOH . C 3 HOH A 141 741 78 HOH HOH . C 3 HOH A 142 742 129 HOH HOH . C 3 HOH A 143 743 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 8M6 . . . B 2 16.014 4.308 7.045 1 45.86 ? N1 8M6 501 A 1 HETATM 2 N N3 8M6 . . . B 2 12.73 6.15 11.873 1 27.28 ? N3 8M6 501 A 1 HETATM 3 C C4 8M6 . . . B 2 14.857 2.44 8.733 1 38.83 ? C4 8M6 501 A 1 HETATM 4 C C5 8M6 . . . B 2 14.218 5.93 10.077 1 33.91 ? C5 8M6 501 A 1 HETATM 5 C C6 8M6 . . . B 2 14.076 4.543 10.159 1 33.59 ? C6 8M6 501 A 1 HETATM 6 C C7 8M6 . . . B 2 13.651 6.9 11.055 1 30.66 ? C7 8M6 501 A 1 HETATM 7 C C8 8M6 . . . B 2 13.187 4.873 12.443 1 27.3 ? C8 8M6 501 A 1 HETATM 8 C C10 8M6 . . . B 2 11.405 6.672 12.039 1 24.71 ? C10 8M6 501 A 1 HETATM 9 C C13 8M6 . . . B 2 14.296 0.546 6.446 1 47.3 ? C13 8M6 501 A 1 HETATM 10 C C15 8M6 . . . B 2 12.231 0.119 5.66 1 47.2 ? C15 8M6 501 A 1 HETATM 11 C C17 8M6 . . . B 2 18.7 3.058 5.66 1 59.58 ? C17 8M6 501 A 1 HETATM 12 C C20 8M6 . . . B 2 18.64 7.801 5.813 1 68.37 ? C20 8M6 501 A 1 HETATM 13 C C21 8M6 . . . B 2 20.146 9.559 5.477 1 76.46 ? C21 8M6 501 A 1 HETATM 14 C C22 8M6 . . . B 2 21.278 8.674 5.601 1 76.9 ? C22 8M6 501 A 1 HETATM 15 C C24 8M6 . . . B 2 17.156 7.363 5.918 1 63.46 ? C24 8M6 501 A 1 HETATM 16 C C1 8M6 . . . B 2 16.07 2.993 6.828 1 45.75 ? C1 8M6 501 A 1 HETATM 17 C C2 8M6 . . . B 2 15.362 4.716 8.127 1 44.85 ? C2 8M6 501 A 1 HETATM 18 C C3 8M6 . . . B 2 14.751 3.835 9.013 1 37.59 ? C3 8M6 501 A 1 HETATM 19 N N2 8M6 . . . B 2 15.529 2.078 7.631 1 42.83 ? N2 8M6 501 A 1 HETATM 20 S S1 8M6 . . . B 2 15.103 6.323 8.666 1 39.18 ? S1 8M6 501 A 1 HETATM 21 C C9 8M6 . . . B 2 13.327 3.876 11.32 1 30.05 ? C9 8M6 501 A 1 HETATM 22 C C11 8M6 . . . B 2 10.434 5.926 12.905 1 22.01 ? C11 8M6 501 A 1 HETATM 23 O O1 8M6 . . . B 2 11.114 7.746 11.526 1 25.37 ? O1 8M6 501 A 1 HETATM 24 C C12 8M6 . . . B 2 15.587 0.672 7.337 1 46.46 ? C12 8M6 501 A 1 HETATM 25 O O2 8M6 . . . B 2 14.209 0.999 5.268 1 48.44 ? O2 8M6 501 A 1 HETATM 26 C C14 8M6 . . . B 2 13.024 0.765 4.754 1 49.15 ? C14 8M6 501 A 1 HETATM 27 C C16 8M6 . . . B 2 13.062 -0.019 6.8 1 44.25 ? C16 8M6 501 A 1 HETATM 28 S S2 8M6 . . . B 2 16.995 2.58 5.347 1 51.78 ? S2 8M6 501 A 1 HETATM 29 C C18 8M6 . . . B 2 18.882 4.554 5.268 1 64.67 ? C18 8M6 501 A 1 HETATM 30 O O3 8M6 . . . B 2 18.508 4.954 4.194 1 71.97 ? O3 8M6 501 A 1 HETATM 31 N N4 8M6 . . . B 2 19.491 5.44 6.209 1 65.16 ? N4 8M6 501 A 1 HETATM 32 C C19 8M6 . . . B 2 19.715 6.868 5.943 1 69.49 ? C19 8M6 501 A 1 HETATM 33 N N5 8M6 . . . B 2 18.907 9.084 5.592 1 72.89 ? N5 8M6 501 A 1 HETATM 34 C C23 8M6 . . . B 2 21.044 7.332 5.838 1 74.69 ? C23 8M6 501 A 1 HETATM 35 O O4 8M6 . . . B 2 14.265 1.423 9.556 1 36.49 ? O4 8M6 501 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 35 #