data_7Q3Q # _model_server_result.job_id dlTRELzASDIjWggakl21_Q _model_server_result.datetime_utc '2024-11-21 09:17:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q3q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 7Q3Q # _exptl.entry_id 7Q3Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Q3Q _cell.length_a 62.451 _cell.length_b 62.451 _cell.length_c 218.525 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q3Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 529 NAG 3 n C NAG 2 C 2 NAG A 530 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 25 B CYS 24 1_555 A SG CYS 99 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 B SG CYS 6 A CYS 336 1_555 B SG CYS 31 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 B SG CYS 49 A CYS 379 1_555 B SG CYS 102 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 B SG CYS 61 A CYS 391 1_555 B SG CYS 195 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 B SG CYS 150 A CYS 480 1_555 B SG CYS 158 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 B ND2 ASN 13 A ASN 343 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7Q3Q _atom_sites.fract_transf_matrix[1][1] 0.016013 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016013 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004576 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CL B 1 201 1 CL CL . E 4 CL B 1 202 2 CL CL . F 5 GOL A 1 601 601 GOL GOL . G 5 GOL A 1 602 701 GOL GOL . H 5 GOL A 1 603 801 GOL GOL . I 4 CL A 1 604 3 CL CL . J 6 SO4 A 1 605 1 SO4 SO4 . K 7 HOH B 1 301 112 HOH HOH . K 7 HOH B 2 302 3 HOH HOH . K 7 HOH B 3 303 15 HOH HOH . K 7 HOH B 4 304 76 HOH HOH . K 7 HOH B 5 305 110 HOH HOH . K 7 HOH B 6 306 9 HOH HOH . K 7 HOH B 7 307 86 HOH HOH . K 7 HOH B 8 308 37 HOH HOH . K 7 HOH B 9 309 48 HOH HOH . K 7 HOH B 10 310 63 HOH HOH . K 7 HOH B 11 311 44 HOH HOH . K 7 HOH B 12 312 58 HOH HOH . K 7 HOH B 13 313 46 HOH HOH . K 7 HOH B 14 314 39 HOH HOH . K 7 HOH B 15 315 20 HOH HOH . K 7 HOH B 16 316 4 HOH HOH . K 7 HOH B 17 317 36 HOH HOH . K 7 HOH B 18 318 83 HOH HOH . K 7 HOH B 19 319 45 HOH HOH . K 7 HOH B 20 320 50 HOH HOH . K 7 HOH B 21 321 62 HOH HOH . K 7 HOH B 22 322 47 HOH HOH . K 7 HOH B 23 323 61 HOH HOH . K 7 HOH B 24 324 85 HOH HOH . K 7 HOH B 25 325 17 HOH HOH . K 7 HOH B 26 326 105 HOH HOH . K 7 HOH B 27 327 101 HOH HOH . K 7 HOH B 28 328 77 HOH HOH . K 7 HOH B 29 329 130 HOH HOH . K 7 HOH B 30 330 88 HOH HOH . K 7 HOH B 31 331 60 HOH HOH . K 7 HOH B 32 332 91 HOH HOH . K 7 HOH B 33 333 19 HOH HOH . K 7 HOH B 34 334 69 HOH HOH . K 7 HOH B 35 335 125 HOH HOH . K 7 HOH B 36 336 129 HOH HOH . K 7 HOH B 37 337 99 HOH HOH . K 7 HOH B 38 338 40 HOH HOH . K 7 HOH B 39 339 134 HOH HOH . K 7 HOH B 40 340 92 HOH HOH . K 7 HOH B 41 341 57 HOH HOH . K 7 HOH B 42 342 71 HOH HOH . L 7 HOH A 1 701 95 HOH HOH . L 7 HOH A 2 702 131 HOH HOH . L 7 HOH A 3 703 32 HOH HOH . L 7 HOH A 4 704 14 HOH HOH . L 7 HOH A 5 705 55 HOH HOH . L 7 HOH A 6 706 25 HOH HOH . L 7 HOH A 7 707 42 HOH HOH . L 7 HOH A 8 708 8 HOH HOH . L 7 HOH A 9 709 84 HOH HOH . L 7 HOH A 10 710 33 HOH HOH . L 7 HOH A 11 711 28 HOH HOH . L 7 HOH A 12 712 113 HOH HOH . L 7 HOH A 13 713 67 HOH HOH . L 7 HOH A 14 714 11 HOH HOH . L 7 HOH A 15 715 79 HOH HOH . L 7 HOH A 16 716 68 HOH HOH . L 7 HOH A 17 717 30 HOH HOH . L 7 HOH A 18 718 35 HOH HOH . L 7 HOH A 19 719 6 HOH HOH . L 7 HOH A 20 720 12 HOH HOH . L 7 HOH A 21 721 21 HOH HOH . L 7 HOH A 22 722 64 HOH HOH . L 7 HOH A 23 723 1 HOH HOH . L 7 HOH A 24 724 27 HOH HOH . L 7 HOH A 25 725 38 HOH HOH . L 7 HOH A 26 726 87 HOH HOH . L 7 HOH A 27 727 72 HOH HOH . L 7 HOH A 28 728 13 HOH HOH . L 7 HOH A 29 729 59 HOH HOH . L 7 HOH A 30 730 56 HOH HOH . L 7 HOH A 31 731 122 HOH HOH . L 7 HOH A 32 732 34 HOH HOH . L 7 HOH A 33 733 115 HOH HOH . L 7 HOH A 34 734 7 HOH HOH . L 7 HOH A 35 735 2 HOH HOH . L 7 HOH A 36 736 81 HOH HOH . L 7 HOH A 37 737 100 HOH HOH . L 7 HOH A 38 738 52 HOH HOH . L 7 HOH A 39 739 90 HOH HOH . L 7 HOH A 40 740 18 HOH HOH . L 7 HOH A 41 741 10 HOH HOH . L 7 HOH A 42 742 51 HOH HOH . L 7 HOH A 43 743 126 HOH HOH . L 7 HOH A 44 744 54 HOH HOH . L 7 HOH A 45 745 43 HOH HOH . L 7 HOH A 46 746 65 HOH HOH . L 7 HOH A 47 747 82 HOH HOH . L 7 HOH A 48 748 5 HOH HOH . L 7 HOH A 49 749 70 HOH HOH . L 7 HOH A 50 750 29 HOH HOH . L 7 HOH A 51 751 26 HOH HOH . L 7 HOH A 52 752 80 HOH HOH . L 7 HOH A 53 753 75 HOH HOH . L 7 HOH A 54 754 106 HOH HOH . L 7 HOH A 55 755 66 HOH HOH . L 7 HOH A 56 756 41 HOH HOH . L 7 HOH A 57 757 49 HOH HOH . L 7 HOH A 58 758 31 HOH HOH . L 7 HOH A 59 759 74 HOH HOH . L 7 HOH A 60 760 102 HOH HOH . L 7 HOH A 61 761 96 HOH HOH . L 7 HOH A 62 762 16 HOH HOH . L 7 HOH A 63 763 73 HOH HOH . L 7 HOH A 64 764 98 HOH HOH . L 7 HOH A 65 765 24 HOH HOH . L 7 HOH A 66 766 23 HOH HOH . L 7 HOH A 67 767 22 HOH HOH . L 7 HOH A 68 768 104 HOH HOH . L 7 HOH A 69 769 93 HOH HOH . L 7 HOH A 70 770 119 HOH HOH . L 7 HOH A 71 771 53 HOH HOH . L 7 HOH A 72 772 123 HOH HOH . L 7 HOH A 73 773 120 HOH HOH . L 7 HOH A 74 774 109 HOH HOH . L 7 HOH A 75 775 89 HOH HOH . L 7 HOH A 76 776 121 HOH HOH . L 7 HOH A 77 777 116 HOH HOH . L 7 HOH A 78 778 111 HOH HOH . L 7 HOH A 79 779 117 HOH HOH . L 7 HOH A 80 780 108 HOH HOH . L 7 HOH A 81 781 132 HOH HOH . L 7 HOH A 82 782 124 HOH HOH . L 7 HOH A 83 783 127 HOH HOH . L 7 HOH A 84 784 133 HOH HOH . L 7 HOH A 85 785 114 HOH HOH . L 7 HOH A 86 786 107 HOH HOH . L 7 HOH A 87 787 118 HOH HOH . L 7 HOH A 88 788 94 HOH HOH . L 7 HOH A 89 789 103 HOH HOH . L 7 HOH A 90 790 128 HOH HOH . L 7 HOH A 91 791 97 HOH HOH . L 7 HOH A 92 792 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 -21.445 -1.366 -49.574 1 56.58 ? C1 GOL 601 A 1 HETATM 2 O O1 GOL . . . F 5 -22.396 -0.976 -48.636 1 62 ? O1 GOL 601 A 1 HETATM 3 C C2 GOL . . . F 5 -20.151 -0.593 -49.244 1 56.64 ? C2 GOL 601 A 1 HETATM 4 O O2 GOL . . . F 5 -20.416 0.666 -48.724 1 68.41 ? O2 GOL 601 A 1 HETATM 5 C C3 GOL . . . F 5 -19.386 -0.521 -50.582 1 60.52 ? C3 GOL 601 A 1 HETATM 6 O O3 GOL . . . F 5 -18.342 0.382 -50.399 1 80.5 ? O3 GOL 601 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #