data_7Q4A # _model_server_result.job_id y5TIRHJ0nNk93S8kr5jscQ _model_server_result.datetime_utc '2025-03-04 14:04:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q4a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 7Q4A # _exptl.entry_id 7Q4A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Q4A _cell.length_a 96.771 _cell.length_b 96.771 _cell.length_c 112.48 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q4A _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall 'P 4cw' _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 196 A ALA 196 1_555 A N PTR 197 A PTR 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C PTR 197 A PTR 197 1_555 A N LEU 198 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C ALA 196 B ALA 196 1_555 B N PTR 197 B PTR 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C PTR 197 B PTR 197 1_555 B N LEU 198 B LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 191 n n C1 C2 GOL sing 192 n n C1 H11 GOL sing 193 n n C1 H12 GOL sing 194 n n O1 HO1 GOL sing 195 n n C2 O2 GOL sing 196 n n C2 C3 GOL sing 197 n n C2 H2 GOL sing 198 n n O2 HO2 GOL sing 199 n n C3 O3 GOL sing 200 n n C3 H31 GOL sing 201 n n C3 H32 GOL sing 202 n n O3 HO3 GOL sing 203 n n # _atom_sites.entry_id 7Q4A _atom_sites.fract_transf_matrix[1][1] 0.010334 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010334 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00889 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A9I A 1 401 401 A9I ALT . D 3 GOL A 1 402 501 GOL GOL . E 4 PEG A 1 403 2 PEG PEG . F 2 A9I B 1 401 401 A9I ALT . G 5 SCN B 1 402 501 SCN SCN . H 6 HOH A 1 501 13 HOH HOH . H 6 HOH A 2 502 23 HOH HOH . H 6 HOH A 3 503 11 HOH HOH . H 6 HOH A 4 504 7 HOH HOH . H 6 HOH A 5 505 12 HOH HOH . H 6 HOH A 6 506 8 HOH HOH . H 6 HOH A 7 507 10 HOH HOH . H 6 HOH A 8 508 17 HOH HOH . I 6 HOH B 1 501 28 HOH HOH . I 6 HOH B 2 502 2 HOH HOH . I 6 HOH B 3 503 6 HOH HOH . I 6 HOH B 4 504 15 HOH HOH . I 6 HOH B 5 505 18 HOH HOH . I 6 HOH B 6 506 22 HOH HOH . I 6 HOH B 7 507 9 HOH HOH . I 6 HOH B 8 508 4 HOH HOH . I 6 HOH B 9 509 30 HOH HOH . I 6 HOH B 10 510 27 HOH HOH . I 6 HOH B 11 511 5 HOH HOH . I 6 HOH B 12 512 20 HOH HOH . I 6 HOH B 13 513 31 HOH HOH . I 6 HOH B 14 514 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 0.592 -57.851 -20.338 1 92.75 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . D 3 -0.393 -57.412 -21.261 1 100.26 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . D 3 -0.072 -58.779 -19.368 1 100.97 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . D 3 0.701 -58.815 -18.202 1 91.52 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . D 3 -1.488 -58.336 -19.044 1 106.42 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . D 3 -2.436 -59.183 -19.713 1 99.43 ? O3 GOL 402 A 1 HETATM 7 H H11 GOL . . . D 3 1.395 -58.369 -20.865 1 111.58 ? H11 GOL 402 A 1 HETATM 8 H H12 GOL . . . D 3 1.018 -56.996 -19.809 1 111.58 ? H12 GOL 402 A 1 HETATM 9 H HO1 GOL . . . D 3 -0.003 -57.35 -22.144 1 120.59 ? HO1 GOL 402 A 1 HETATM 10 H H2 GOL . . . D 3 -0.113 -59.782 -19.816 1 121.44 ? H2 GOL 402 A 1 HETATM 11 H HO2 GOL . . . D 3 1.522 -59.296 -18.373 1 110.1 ? HO2 GOL 402 A 1 HETATM 12 H H31 GOL . . . D 3 -1.65 -58.385 -17.966 1 127.99 ? H31 GOL 402 A 1 HETATM 13 H H32 GOL . . . D 3 -1.631 -57.301 -19.362 1 127.99 ? H32 GOL 402 A 1 HETATM 14 H HO3 GOL . . . D 3 -3.195 -59.338 -19.134 1 119.6 ? HO3 GOL 402 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #