data_7Q4X # _model_server_result.job_id GaixjxeIVDaSZZO8GGz8OQ _model_server_result.datetime_utc '2024-11-13 20:25:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q4x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":608}' # _entry.id 7Q4X # _exptl.entry_id 7Q4X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 134.087 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-hydroxybutanedioic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7Q4X _cell.length_a 94.75 _cell.length_b 94.75 _cell.length_c 142.62 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q4X _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 A CYS 53 1_555 A SG CYS 59 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? disulf ? disulf2 A SG CYS 72 A CYS 75 1_555 A SG CYS 88 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf3 A SG CYS 87 A CYS 90 1_555 A SG CYS 98 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf4 A SG CYS 120 A CYS 123 1_555 A SG CYS 165 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf5 A SG CYS 164 A CYS 167 1_555 A SG CYS 173 A CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf6 A SG CYS 196 A CYS 199 1_555 A SG CYS 242 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf7 A SG CYS 241 A CYS 244 1_555 A SG CYS 249 A CYS 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf8 A SG CYS 261 A CYS 264 1_555 A SG CYS 275 A CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf9 A SG CYS 274 A CYS 277 1_555 A SG CYS 285 A CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? disulf ? disulf10 A SG CYS 312 A CYS 315 1_555 A SG CYS 357 A CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf11 A SG CYS 356 A CYS 359 1_555 A SG CYS 365 A CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf12 A SG CYS 388 A CYS 391 1_555 A SG CYS 434 A CYS 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf13 A SG CYS 433 A CYS 436 1_555 A SG CYS 444 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf14 A SG CYS 457 A CYS 460 1_555 A SG CYS 473 A CYS 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf15 A SG CYS 472 A CYS 475 1_555 A SG CYS 483 A CYS 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? disulf ? disulf16 A SG CYS 510 A CYS 513 1_555 A SG CYS 555 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? disulf ? disulf17 A SG CYS 554 A CYS 557 1_555 A SG CYS 563 A CYS 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? # _chem_comp.formula 'C4 H6 O5' _chem_comp.formula_weight 134.087 _chem_comp.id LMR _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-hydroxybutanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms L-Malate # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A LMR doub 244 n n C1 O1B LMR sing 245 n n C1 C2 LMR sing 246 n n C2 O2 LMR sing 247 n n C2 C3 LMR sing 248 n n C3 C4 LMR sing 249 n n C4 O4A LMR sing 250 n n C4 O4B LMR doub 251 n n C2 H2 LMR sing 252 n n O2 HO2 LMR sing 253 n n C3 H3 LMR sing 254 n n C3 H3A LMR sing 255 n n O1B H4 LMR sing 256 n n O4A H5 LMR sing 257 n n # _atom_sites.entry_id 7Q4X _atom_sites.fract_transf_matrix[1][1] 0.010554 _atom_sites.fract_transf_matrix[1][2] 0.006093 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012187 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007012 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8XI A 1 601 1 8XI CEC . C 2 8XI A 1 602 2 8XI CEC . D 3 MLI A 1 603 1 MLI MLI . E 3 MLI A 1 604 2 MLI MLI . F 3 MLI A 1 605 3 MLI MLI . G 3 MLI A 1 606 4 MLI MLI . H 3 MLI A 1 607 5 MLI MLI . I 4 LMR A 1 608 1 LMR LMR . J 5 FMT A 1 609 1 FMT FMT . K 5 FMT A 1 610 2 FMT FMT . L 5 FMT A 1 611 3 FMT FMT . M 5 FMT A 1 612 4 FMT FMT . N 5 FMT A 1 613 5 FMT FMT . O 5 FMT A 1 614 6 FMT FMT . P 5 FMT A 1 615 7 FMT FMT . Q 6 ACT A 1 616 1 ACT ACT . R 6 ACT A 1 617 2 ACT ACT . S 7 HOH A 1 701 116 HOH HOH . S 7 HOH A 2 702 20 HOH HOH . S 7 HOH A 3 703 97 HOH HOH . S 7 HOH A 4 704 96 HOH HOH . S 7 HOH A 5 705 6 HOH HOH . S 7 HOH A 6 706 23 HOH HOH . S 7 HOH A 7 707 135 HOH HOH . S 7 HOH A 8 708 103 HOH HOH . S 7 HOH A 9 709 75 HOH HOH . S 7 HOH A 10 710 33 HOH HOH . S 7 HOH A 11 711 29 HOH HOH . S 7 HOH A 12 712 3 HOH HOH . S 7 HOH A 13 713 22 HOH HOH . S 7 HOH A 14 714 101 HOH HOH . S 7 HOH A 15 715 15 HOH HOH . S 7 HOH A 16 716 71 HOH HOH . S 7 HOH A 17 717 64 HOH HOH . S 7 HOH A 18 718 26 HOH HOH . S 7 HOH A 19 719 125 HOH HOH . S 7 HOH A 20 720 41 HOH HOH . S 7 HOH A 21 721 24 HOH HOH . S 7 HOH A 22 722 121 HOH HOH . S 7 HOH A 23 723 95 HOH HOH . S 7 HOH A 24 724 7 HOH HOH . S 7 HOH A 25 725 21 HOH HOH . S 7 HOH A 26 726 30 HOH HOH . S 7 HOH A 27 727 45 HOH HOH . S 7 HOH A 28 728 12 HOH HOH . S 7 HOH A 29 729 13 HOH HOH . S 7 HOH A 30 730 67 HOH HOH . S 7 HOH A 31 731 36 HOH HOH . S 7 HOH A 32 732 114 HOH HOH . S 7 HOH A 33 733 8 HOH HOH . S 7 HOH A 34 734 5 HOH HOH . S 7 HOH A 35 735 88 HOH HOH . S 7 HOH A 36 736 28 HOH HOH . S 7 HOH A 37 737 137 HOH HOH . S 7 HOH A 38 738 90 HOH HOH . S 7 HOH A 39 739 123 HOH HOH . S 7 HOH A 40 740 4 HOH HOH . S 7 HOH A 41 741 2 HOH HOH . S 7 HOH A 42 742 128 HOH HOH . S 7 HOH A 43 743 127 HOH HOH . S 7 HOH A 44 744 37 HOH HOH . S 7 HOH A 45 745 16 HOH HOH . S 7 HOH A 46 746 81 HOH HOH . S 7 HOH A 47 747 107 HOH HOH . S 7 HOH A 48 748 102 HOH HOH . S 7 HOH A 49 749 72 HOH HOH . S 7 HOH A 50 750 10 HOH HOH . S 7 HOH A 51 751 61 HOH HOH . S 7 HOH A 52 752 9 HOH HOH . S 7 HOH A 53 753 42 HOH HOH . S 7 HOH A 54 754 27 HOH HOH . S 7 HOH A 55 755 108 HOH HOH . S 7 HOH A 56 756 85 HOH HOH . S 7 HOH A 57 757 84 HOH HOH . S 7 HOH A 58 758 17 HOH HOH . S 7 HOH A 59 759 131 HOH HOH . S 7 HOH A 60 760 77 HOH HOH . S 7 HOH A 61 761 51 HOH HOH . S 7 HOH A 62 762 19 HOH HOH . S 7 HOH A 63 763 35 HOH HOH . S 7 HOH A 64 764 32 HOH HOH . S 7 HOH A 65 765 52 HOH HOH . S 7 HOH A 66 766 47 HOH HOH . S 7 HOH A 67 767 40 HOH HOH . S 7 HOH A 68 768 11 HOH HOH . S 7 HOH A 69 769 39 HOH HOH . S 7 HOH A 70 770 38 HOH HOH . S 7 HOH A 71 771 43 HOH HOH . S 7 HOH A 72 772 48 HOH HOH . S 7 HOH A 73 773 82 HOH HOH . S 7 HOH A 74 774 62 HOH HOH . S 7 HOH A 75 775 58 HOH HOH . S 7 HOH A 76 776 60 HOH HOH . S 7 HOH A 77 777 53 HOH HOH . S 7 HOH A 78 778 56 HOH HOH . S 7 HOH A 79 779 31 HOH HOH . S 7 HOH A 80 780 133 HOH HOH . S 7 HOH A 81 781 66 HOH HOH . S 7 HOH A 82 782 111 HOH HOH . S 7 HOH A 83 783 55 HOH HOH . S 7 HOH A 84 784 124 HOH HOH . S 7 HOH A 85 785 120 HOH HOH . S 7 HOH A 86 786 25 HOH HOH . S 7 HOH A 87 787 106 HOH HOH . S 7 HOH A 88 788 122 HOH HOH . S 7 HOH A 89 789 132 HOH HOH . S 7 HOH A 90 790 87 HOH HOH . S 7 HOH A 91 791 98 HOH HOH . S 7 HOH A 92 792 105 HOH HOH . S 7 HOH A 93 793 49 HOH HOH . S 7 HOH A 94 794 100 HOH HOH . S 7 HOH A 95 795 74 HOH HOH . S 7 HOH A 96 796 117 HOH HOH . S 7 HOH A 97 797 34 HOH HOH . S 7 HOH A 98 798 109 HOH HOH . S 7 HOH A 99 799 14 HOH HOH . S 7 HOH A 100 800 126 HOH HOH . S 7 HOH A 101 801 94 HOH HOH . S 7 HOH A 102 802 129 HOH HOH . S 7 HOH A 103 803 78 HOH HOH . S 7 HOH A 104 804 113 HOH HOH . S 7 HOH A 105 805 91 HOH HOH . S 7 HOH A 106 806 99 HOH HOH . S 7 HOH A 107 807 89 HOH HOH . S 7 HOH A 108 808 115 HOH HOH . S 7 HOH A 109 809 79 HOH HOH . S 7 HOH A 110 810 44 HOH HOH . S 7 HOH A 111 811 68 HOH HOH . S 7 HOH A 112 812 92 HOH HOH . S 7 HOH A 113 813 86 HOH HOH . S 7 HOH A 114 814 110 HOH HOH . S 7 HOH A 115 815 76 HOH HOH . S 7 HOH A 116 816 46 HOH HOH . S 7 HOH A 117 817 59 HOH HOH . S 7 HOH A 118 818 80 HOH HOH . S 7 HOH A 119 819 136 HOH HOH . S 7 HOH A 120 820 93 HOH HOH . S 7 HOH A 121 821 50 HOH HOH . S 7 HOH A 122 822 54 HOH HOH . S 7 HOH A 123 823 139 HOH HOH . S 7 HOH A 124 824 119 HOH HOH . S 7 HOH A 125 825 138 HOH HOH . S 7 HOH A 126 826 70 HOH HOH . S 7 HOH A 127 827 69 HOH HOH . S 7 HOH A 128 828 1 HOH HOH . S 7 HOH A 129 829 73 HOH HOH . S 7 HOH A 130 830 130 HOH HOH . S 7 HOH A 131 831 112 HOH HOH . S 7 HOH A 132 832 63 HOH HOH . S 7 HOH A 133 833 18 HOH HOH . S 7 HOH A 134 834 83 HOH HOH . S 7 HOH A 135 835 57 HOH HOH . S 7 HOH A 136 836 118 HOH HOH . S 7 HOH A 137 837 134 HOH HOH . S 7 HOH A 138 838 104 HOH HOH . S 7 HOH A 139 839 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LMR . . . I 4 49.828 22.028 80.869 1 59.4 ? C1 LMR 608 A 1 HETATM 2 O O1A LMR . . . I 4 49.612 22.615 79.788 1 58.71 ? O1A LMR 608 A 1 HETATM 3 O O1B LMR . . . I 4 50.77 22.326 81.654 1 53.75 ? O1B LMR 608 A 1 HETATM 4 C C2 LMR . . . I 4 48.91 20.908 81.222 1 53.98 ? C2 LMR 608 A 1 HETATM 5 O O2 LMR . . . I 4 48.066 20.639 80.088 1 67.32 ? O2 LMR 608 A 1 HETATM 6 C C3 LMR . . . I 4 49.728 19.671 81.58 1 66.82 ? C3 LMR 608 A 1 HETATM 7 C C4 LMR . . . I 4 49.227 19.035 82.856 1 61.28 ? C4 LMR 608 A 1 HETATM 8 O O4A LMR . . . I 4 49.175 19.729 83.896 1 67.72 ? O4A LMR 608 A 1 HETATM 9 O O4B LMR . . . I 4 48.949 17.819 82.837 1 61.72 ? O4B LMR 608 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 9 #