data_7Q56
#
_model_server_result.job_id            Vl7IbfdNkcefB2rTlcufow 
_model_server_result.datetime_utc      '2024-10-20 00:52:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7q56 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":402}' 
#
_entry.id    7Q56 
#
_exptl.entry_id    7Q56 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    16 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7Q56 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Q56 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
? 3 BA N N 
? 3 CA N N 
? 3 DA N N 
? 3 EA N N 
? 3 FA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 355 I CYS 349 1_555 A SG CYS 364 I CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 C SG CYS 355 K CYS 349 1_555 C SG CYS 364 K CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf3 E SG CYS 355 A CYS 349 1_555 E SG CYS 364 A CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 G SG CYS 355 C CYS 349 1_555 G SG CYS 364 C CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf5 I SG CYS 355 Q CYS 349 1_555 I SG CYS 364 Q CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf6 K SG CYS 355 O CYS 349 1_555 K SG CYS 364 O CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 M SG CYS 355 G CYS 349 1_555 M SG CYS 364 G CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf8 O SG CYS 355 E CYS 349 1_555 O SG CYS 364 E CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7Q56 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Q 3 NAD J 1 401 370 NAD NAD . 
R 3 NAD K 1 401 365 NAD NAD . 
S 3 NAD K 1 402 365 NAD NAD . 
T 3 NAD L 1 401 370 NAD NAD . 
U 3 NAD A 1 401 365 NAD NAD . 
V 3 NAD B 1 401 370 NAD NAD . 
W 3 NAD C 1 401 365 NAD NAD . 
X 3 NAD D 1 401 370 NAD NAD . 
Y 3 NAD Q 1 401 365 NAD NAD . 
Z 3 NAD Q 1 402 365 NAD NAD . 
AA 3 NAD R 1 401 370 NAD NAD . 
BA 3 NAD O 1 401 365 NAD NAD . 
CA 3 NAD P 1 401 370 NAD NAD . 
DA 3 NAD G 1 401 365 NAD NAD . 
EA 3 NAD H 1 401 370 NAD NAD . 
FA 3 NAD F 1 401 370 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . Z 3 133.31 197.356 177.945 1 157.99 ? PA NAD 402 Q 1 
HETATM 2 O O1A NAD . . . Z 3 134.034 197.409 179.264 1 157.99 ? O1A NAD 402 Q 1 
HETATM 3 O O2A NAD . . . Z 3 132.143 198.302 177.972 1 157.99 ? O2A NAD 402 Q 1 
HETATM 4 O O5B NAD . . . Z 3 132.821 195.778 177.674 1 157.99 ? O5B NAD 402 Q 1 
HETATM 5 C C5B NAD . . . Z 3 132.355 194.996 178.771 1 157.99 ? C5B NAD 402 Q 1 
HETATM 6 C C4B NAD . . . Z 3 131.174 195.773 179.431 1 157.99 ? C4B NAD 402 Q 1 
HETATM 7 O O4B NAD . . . Z 3 129.768 195.297 178.802 1 157.99 ? O4B NAD 402 Q 1 
HETATM 8 C C3B NAD . . . Z 3 131.115 195.515 180.688 1 157.99 ? C3B NAD 402 Q 1 
HETATM 9 O O3B NAD . . . Z 3 132.013 196.451 181.441 1 157.99 ? O3B NAD 402 Q 1 
HETATM 10 C C2B NAD . . . Z 3 129.632 195.825 180.993 1 157.99 ? C2B NAD 402 Q 1 
HETATM 11 O O2B NAD . . . Z 3 129.461 197.174 181.021 1 157.99 ? O2B NAD 402 Q 1 
HETATM 12 C C1B NAD . . . Z 3 128.903 195.245 179.791 1 157.99 ? C1B NAD 402 Q 1 
HETATM 13 N N9A NAD . . . Z 3 128.569 193.851 180.034 1 157.99 ? N9A NAD 402 Q 1 
HETATM 14 C C8A NAD . . . Z 3 129.169 192.762 180.484 1 157.99 ? C8A NAD 402 Q 1 
HETATM 15 N N7A NAD . . . Z 3 128.25 191.776 180.436 1 157.99 ? N7A NAD 402 Q 1 
HETATM 16 C C5A NAD . . . Z 3 127.098 192.285 179.968 1 157.99 ? C5A NAD 402 Q 1 
HETATM 17 C C6A NAD . . . Z 3 125.859 191.699 179.734 1 157.99 ? C6A NAD 402 Q 1 
HETATM 18 N N6A NAD . . . Z 3 125.369 190.31 179.922 1 157.99 ? N6A NAD 402 Q 1 
HETATM 19 N N1A NAD . . . Z 3 124.864 192.424 179.256 1 157.99 ? N1A NAD 402 Q 1 
HETATM 20 C C2A NAD . . . Z 3 125.051 193.765 178.984 1 157.99 ? C2A NAD 402 Q 1 
HETATM 21 N N3A NAD . . . Z 3 126.255 194.337 179.208 1 157.99 ? N3A NAD 402 Q 1 
HETATM 22 C C4A NAD . . . Z 3 127.282 193.58 179.706 1 157.99 ? C4A NAD 402 Q 1 
HETATM 23 O O3 NAD . . . Z 3 134.323 197.793 176.727 1 157.99 ? O3 NAD 402 Q 1 
HETATM 24 P PN NAD . . . Z 3 134.616 196.814 175.375 1 157.99 ? PN NAD 402 Q 1 
HETATM 25 O O1N NAD . . . Z 3 134.738 197.658 174.103 1 157.99 ? O1N NAD 402 Q 1 
HETATM 26 O O2N NAD . . . Z 3 133.493 195.848 175.154 1 157.99 ? O2N NAD 402 Q 1 
HETATM 27 O O5D NAD . . . Z 3 135.991 195.968 175.59 1 157.99 ? O5D NAD 402 Q 1 
HETATM 28 C C5D NAD . . . Z 3 135.89 194.582 175.809 1 157.99 ? C5D NAD 402 Q 1 
HETATM 29 C C4D NAD . . . Z 3 135.737 194.251 177.283 1 157.99 ? C4D NAD 402 Q 1 
HETATM 30 O O4D NAD . . . Z 3 136.878 193.197 177.7 1 157.99 ? O4D NAD 402 Q 1 
HETATM 31 C C3D NAD . . . Z 3 135.962 195.292 178.037 1 157.99 ? C3D NAD 402 Q 1 
HETATM 32 O O3D NAD . . . Z 3 135.412 195.043 179.441 1 157.99 ? O3D NAD 402 Q 1 
HETATM 33 C C2D NAD . . . Z 3 137.436 195.361 178.114 1 157.99 ? C2D NAD 402 Q 1 
HETATM 34 O O2D NAD . . . Z 3 137.777 196.119 179.21 1 157.99 ? O2D NAD 402 Q 1 
HETATM 35 C C1D NAD . . . Z 3 137.772 193.851 178.315 1 157.99 ? C1D NAD 402 Q 1 
HETATM 36 N N1N NAD . . . Z 3 139.089 193.604 177.677 1 157.99 ? N1N NAD 402 Q 1 
HETATM 37 C C2N NAD . . . Z 3 139.474 194.386 176.619 1 157.99 ? C2N NAD 402 Q 1 
HETATM 38 C C3N NAD . . . Z 3 140.708 194.149 176.034 1 157.99 ? C3N NAD 402 Q 1 
HETATM 39 C C7N NAD . . . Z 3 141.164 195.033 174.829 1 157.99 ? C7N NAD 402 Q 1 
HETATM 40 O O7N NAD . . . Z 3 142.248 194.876 174.365 1 157.99 ? O7N NAD 402 Q 1 
HETATM 41 N N7N NAD . . . Z 3 140.233 196.054 174.285 1 157.99 ? N7N NAD 402 Q 1 
HETATM 42 C C4N NAD . . . Z 3 141.534 193.157 176.493 1 157.99 ? C4N NAD 402 Q 1 
HETATM 43 C C5N NAD . . . Z 3 141.138 192.384 177.555 1 157.99 ? C5N NAD 402 Q 1 
HETATM 44 C C6N NAD . . . Z 3 139.897 192.617 178.148 1 157.99 ? C6N NAD 402 Q 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    45 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           44 
#