data_7Q5D # _model_server_result.job_id xxY8Htk6CWJKfDu5I86x8Q _model_server_result.datetime_utc '2024-11-19 18:45:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q5d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 7Q5D # _exptl.entry_id 7Q5D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 121.158 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7Q5D _cell.length_a 70.47 _cell.length_b 70.47 _cell.length_c 96.635 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q5D _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 2 NAG 2 n B NAG 2 B 2 NAG B 1 NAG 2 n C NAG 1 C 1 NAG B 3 NAG 2 n C NAG 2 C 2 NAG B 5 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 103 A CYS 101 1_555 A SG CYS 171 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? covale ? covale1 A ND2 ASN 32 A ASN 30 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 121 A ASN 119 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale4 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C3 H7 N O2 S' _chem_comp.formula_weight 121.158 _chem_comp.id CYS _chem_comp.mon_nstd_flag y _chem_comp.name CYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA CYS sing 70 n n N H CYS sing 71 n n N H2 CYS sing 72 n n CA C CYS sing 73 n n CA CB CYS sing 74 n n CA HA CYS sing 75 n n C O CYS doub 76 n n C OXT CYS sing 77 n n CB SG CYS sing 78 n n CB HB2 CYS sing 79 n n CB HB3 CYS sing 80 n n SG HG CYS sing 81 n n OXT HXT CYS sing 82 n n # _atom_sites.entry_id 7Q5D _atom_sites.fract_transf_matrix[1][1] 0.01419 _atom_sites.fract_transf_matrix[1][2] 0.008193 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016386 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010348 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 CYS A 1 201 206 CYS CYS . E 4 PTY A 1 202 301 PTY PTY . F 5 GOL A 1 203 203 GOL GOL . G 6 HOH A 1 301 13 HOH HOH . G 6 HOH A 2 302 50 HOH HOH . G 6 HOH A 3 303 13 HOH HOH . G 6 HOH A 4 304 8 HOH HOH . G 6 HOH A 5 305 47 HOH HOH . G 6 HOH A 6 306 42 HOH HOH . G 6 HOH A 7 307 6 HOH HOH . G 6 HOH A 8 308 7 HOH HOH . G 6 HOH A 9 309 19 HOH HOH . G 6 HOH A 10 310 56 HOH HOH . G 6 HOH A 11 311 4 HOH HOH . G 6 HOH A 12 312 14 HOH HOH . G 6 HOH A 13 313 10 HOH HOH . G 6 HOH A 14 314 16 HOH HOH . G 6 HOH A 15 315 27 HOH HOH . G 6 HOH A 16 316 1 HOH HOH . G 6 HOH A 17 317 4 HOH HOH . G 6 HOH A 18 318 37 HOH HOH . G 6 HOH A 19 319 59 HOH HOH . G 6 HOH A 20 320 23 HOH HOH . G 6 HOH A 21 321 7 HOH HOH . G 6 HOH A 22 322 17 HOH HOH . G 6 HOH A 23 323 6 HOH HOH . G 6 HOH A 24 324 8 HOH HOH . G 6 HOH A 25 325 36 HOH HOH . G 6 HOH A 26 326 39 HOH HOH . G 6 HOH A 27 327 15 HOH HOH . G 6 HOH A 28 328 41 HOH HOH . G 6 HOH A 29 329 3 HOH HOH . G 6 HOH A 30 330 205 HOH HOH . G 6 HOH A 31 331 20 HOH HOH . G 6 HOH A 32 332 22 HOH HOH . G 6 HOH A 33 333 45 HOH HOH . G 6 HOH A 34 334 9 HOH HOH . G 6 HOH A 35 335 26 HOH HOH . G 6 HOH A 36 336 12 HOH HOH . G 6 HOH A 37 337 2 HOH HOH . G 6 HOH A 38 338 24 HOH HOH . G 6 HOH A 39 339 9 HOH HOH . G 6 HOH A 40 340 10 HOH HOH . G 6 HOH A 41 341 22 HOH HOH . G 6 HOH A 42 342 29 HOH HOH . G 6 HOH A 43 343 11 HOH HOH . G 6 HOH A 44 344 26 HOH HOH . G 6 HOH A 45 345 45 HOH HOH . G 6 HOH A 46 346 19 HOH HOH . G 6 HOH A 47 347 3 HOH HOH . G 6 HOH A 48 348 15 HOH HOH . G 6 HOH A 49 349 47 HOH HOH . G 6 HOH A 50 350 5 HOH HOH . G 6 HOH A 51 351 34 HOH HOH . G 6 HOH A 52 352 11 HOH HOH . G 6 HOH A 53 353 49 HOH HOH . G 6 HOH A 54 354 18 HOH HOH . G 6 HOH A 55 355 64 HOH HOH . G 6 HOH A 56 356 33 HOH HOH . G 6 HOH A 57 357 21 HOH HOH . G 6 HOH A 58 358 46 HOH HOH . G 6 HOH A 59 359 29 HOH HOH . G 6 HOH A 60 360 18 HOH HOH . G 6 HOH A 61 361 65 HOH HOH . G 6 HOH A 62 362 27 HOH HOH . G 6 HOH A 63 363 19 HOH HOH . G 6 HOH A 64 364 6 HOH HOH . G 6 HOH A 65 365 33 HOH HOH . G 6 HOH A 66 366 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N CYS . . . D 3 22.844 -31.136 1.969 1 58.92 ? N CYS 201 A 1 HETATM 2 C CA CYS . . . D 3 24.218 -31.568 2.114 1 76.82 ? CA CYS 201 A 1 HETATM 3 C C CYS . . . D 3 24.716 -32.359 0.896 1 79.07 ? C CYS 201 A 1 HETATM 4 O O CYS . . . D 3 24.313 -32.087 -0.238 1 81.91 ? O CYS 201 A 1 HETATM 5 C CB CYS . . . D 3 24.378 -32.356 3.416 1 86.91 ? CB CYS 201 A 1 HETATM 6 S SG CYS . . . D 3 24.913 -31.214 4.759 1 92.33 ? SG CYS 201 A 1 HETATM 7 O OXT CYS . . . D 3 25.561 -33.245 0.984 1 83.24 ? OXT CYS 201 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #