data_7Q5D # _model_server_result.job_id i-yyUEXqjDId5h46IVkO6w _model_server_result.datetime_utc '2024-11-19 18:27:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q5d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":203}' # _entry.id 7Q5D # _exptl.entry_id 7Q5D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7Q5D _cell.length_a 70.47 _cell.length_b 70.47 _cell.length_c 96.635 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q5D _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 2 NAG 2 n B NAG 2 B 2 NAG B 1 NAG 2 n C NAG 1 C 1 NAG B 3 NAG 2 n C NAG 2 C 2 NAG B 5 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 103 A CYS 101 1_555 A SG CYS 171 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? covale ? covale1 A ND2 ASN 32 A ASN 30 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 121 A ASN 119 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale4 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7Q5D _atom_sites.fract_transf_matrix[1][1] 0.01419 _atom_sites.fract_transf_matrix[1][2] 0.008193 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016386 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010348 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 CYS A 1 201 206 CYS CYS . E 4 PTY A 1 202 301 PTY PTY . F 5 GOL A 1 203 203 GOL GOL . G 6 HOH A 1 301 13 HOH HOH . G 6 HOH A 2 302 50 HOH HOH . G 6 HOH A 3 303 13 HOH HOH . G 6 HOH A 4 304 8 HOH HOH . G 6 HOH A 5 305 47 HOH HOH . G 6 HOH A 6 306 42 HOH HOH . G 6 HOH A 7 307 6 HOH HOH . G 6 HOH A 8 308 7 HOH HOH . G 6 HOH A 9 309 19 HOH HOH . G 6 HOH A 10 310 56 HOH HOH . G 6 HOH A 11 311 4 HOH HOH . G 6 HOH A 12 312 14 HOH HOH . G 6 HOH A 13 313 10 HOH HOH . G 6 HOH A 14 314 16 HOH HOH . G 6 HOH A 15 315 27 HOH HOH . G 6 HOH A 16 316 1 HOH HOH . G 6 HOH A 17 317 4 HOH HOH . G 6 HOH A 18 318 37 HOH HOH . G 6 HOH A 19 319 59 HOH HOH . G 6 HOH A 20 320 23 HOH HOH . G 6 HOH A 21 321 7 HOH HOH . G 6 HOH A 22 322 17 HOH HOH . G 6 HOH A 23 323 6 HOH HOH . G 6 HOH A 24 324 8 HOH HOH . G 6 HOH A 25 325 36 HOH HOH . G 6 HOH A 26 326 39 HOH HOH . G 6 HOH A 27 327 15 HOH HOH . G 6 HOH A 28 328 41 HOH HOH . G 6 HOH A 29 329 3 HOH HOH . G 6 HOH A 30 330 205 HOH HOH . G 6 HOH A 31 331 20 HOH HOH . G 6 HOH A 32 332 22 HOH HOH . G 6 HOH A 33 333 45 HOH HOH . G 6 HOH A 34 334 9 HOH HOH . G 6 HOH A 35 335 26 HOH HOH . G 6 HOH A 36 336 12 HOH HOH . G 6 HOH A 37 337 2 HOH HOH . G 6 HOH A 38 338 24 HOH HOH . G 6 HOH A 39 339 9 HOH HOH . G 6 HOH A 40 340 10 HOH HOH . G 6 HOH A 41 341 22 HOH HOH . G 6 HOH A 42 342 29 HOH HOH . G 6 HOH A 43 343 11 HOH HOH . G 6 HOH A 44 344 26 HOH HOH . G 6 HOH A 45 345 45 HOH HOH . G 6 HOH A 46 346 19 HOH HOH . G 6 HOH A 47 347 3 HOH HOH . G 6 HOH A 48 348 15 HOH HOH . G 6 HOH A 49 349 47 HOH HOH . G 6 HOH A 50 350 5 HOH HOH . G 6 HOH A 51 351 34 HOH HOH . G 6 HOH A 52 352 11 HOH HOH . G 6 HOH A 53 353 49 HOH HOH . G 6 HOH A 54 354 18 HOH HOH . G 6 HOH A 55 355 64 HOH HOH . G 6 HOH A 56 356 33 HOH HOH . G 6 HOH A 57 357 21 HOH HOH . G 6 HOH A 58 358 46 HOH HOH . G 6 HOH A 59 359 29 HOH HOH . G 6 HOH A 60 360 18 HOH HOH . G 6 HOH A 61 361 65 HOH HOH . G 6 HOH A 62 362 27 HOH HOH . G 6 HOH A 63 363 19 HOH HOH . G 6 HOH A 64 364 6 HOH HOH . G 6 HOH A 65 365 33 HOH HOH . G 6 HOH A 66 366 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 21.746 -9.343 7.445 1 62.89 ? C1 GOL 203 A 1 HETATM 2 O O1 GOL . . . F 5 21.942 -9.116 8.809 1 65.82 ? O1 GOL 203 A 1 HETATM 3 C C2 GOL . . . F 5 21.198 -10.785 7.345 1 66.77 ? C2 GOL 203 A 1 HETATM 4 O O2 GOL . . . F 5 20.232 -11.042 8.272 1 68.59 ? O2 GOL 203 A 1 HETATM 5 C C3 GOL . . . F 5 20.616 -10.903 5.943 1 65.34 ? C3 GOL 203 A 1 HETATM 6 O O3 GOL . . . F 5 19.99 -12.148 5.927 1 66.27 ? O3 GOL 203 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 24 _model_server_stats.element_count 6 #