data_7Q5O
#
_model_server_result.job_id            SKDIaj9gR0ivPG1PmN8uAw 
_model_server_result.datetime_utc      '2024-11-24 21:38:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7q5o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    7Q5O 
#
_exptl.entry_id    7Q5O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              509.601 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[[11-ethanoyl-4-(furan-2-ylmethyl)-3-oxidanylidene-8-thia-4,6,11-triazatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),5-trien-5-yl]sulfanyl]-~{N}-(2-methylpyridin-3-yl)ethanamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7Q5O 
_cell.length_a            52.43 
_cell.length_b            72.494 
_cell.length_c            32.041 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Q5O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C24 H23 N5 O4 S2' 
_chem_comp.formula_weight    509.601 
_chem_comp.id                8M6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[[11-ethanoyl-4-(furan-2-ylmethyl)-3-oxidanylidene-8-thia-4,6,11-triazatricyclo[7.4.0.0^{2,7}]trideca-1(9),2(7),5-trien-5-yl]sulfanyl]-~{N}-(2-methylpyridin-3-yl)ethanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 C22 8M6 doub 1 n y 
C21 N5 8M6 sing 2 n y 
C22 C23 8M6 sing 3 n y 
N5 C20 8M6 doub 4 n y 
O3 C18 8M6 doub 5 n n 
C23 C19 8M6 doub 6 n y 
C20 C19 8M6 sing 7 n y 
C20 C24 8M6 sing 8 n n 
C19 N4 8M6 sing 9 n n 
C18 N4 8M6 sing 10 n n 
C18 C17 8M6 sing 11 n n 
C15 C16 8M6 sing 12 n y 
C15 C14 8M6 doub 13 n y 
C16 C13 8M6 doub 14 n y 
S2 C17 8M6 sing 15 n n 
S2 C1 8M6 sing 16 n n 
C14 O2 8M6 sing 17 n y 
C13 O2 8M6 sing 18 n y 
C13 C12 8M6 sing 19 n n 
C1 N1 8M6 doub 20 n n 
C1 N2 8M6 sing 21 n n 
N1 C2 8M6 sing 22 n n 
C12 N2 8M6 sing 23 n n 
N2 C4 8M6 sing 24 n n 
C2 S1 8M6 sing 25 n y 
C2 C3 8M6 doub 26 n y 
S1 C5 8M6 sing 27 n y 
C4 C3 8M6 sing 28 n n 
C4 O4 8M6 doub 29 n n 
C3 C6 8M6 sing 30 n y 
C5 C6 8M6 doub 31 n y 
C5 C7 8M6 sing 32 n n 
C6 C9 8M6 sing 33 n n 
C7 N3 8M6 sing 34 n n 
C9 C8 8M6 sing 35 n n 
O1 C10 8M6 doub 36 n n 
N3 C10 8M6 sing 37 n n 
N3 C8 8M6 sing 38 n n 
C10 C11 8M6 sing 39 n n 
C7 H1 8M6 sing 40 n n 
C7 H2 8M6 sing 41 n n 
C8 H3 8M6 sing 42 n n 
C8 H4 8M6 sing 43 n n 
C15 H5 8M6 sing 44 n n 
C17 H6 8M6 sing 45 n n 
C17 H7 8M6 sing 46 n n 
C21 H8 8M6 sing 47 n n 
C22 H9 8M6 sing 48 n n 
C24 H10 8M6 sing 49 n n 
C24 H11 8M6 sing 50 n n 
C24 H12 8M6 sing 51 n n 
C9 H13 8M6 sing 52 n n 
C9 H14 8M6 sing 53 n n 
C11 H15 8M6 sing 54 n n 
C11 H16 8M6 sing 55 n n 
C11 H17 8M6 sing 56 n n 
C12 H18 8M6 sing 57 n n 
C12 H19 8M6 sing 58 n n 
C14 H20 8M6 sing 59 n n 
C16 H21 8M6 sing 60 n n 
N4 H22 8M6 sing 61 n n 
C23 H23 8M6 sing 62 n n 
#
_atom_sites.entry_id                     7Q5O 
_atom_sites.fract_transf_matrix[1][1]    0.019073 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013794 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.03121 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 8M6 A 1 501 501 8M6 LIG . 
C 3 EDO A 1 502 502 EDO EDO . 
D 3 EDO A 1 503 503 EDO EDO . 
E 3 EDO A 1 504 506 EDO EDO . 
F 4 HOH A 1 601 146 HOH HOH . 
F 4 HOH A 2 602 121 HOH HOH . 
F 4 HOH A 3 603 106 HOH HOH . 
F 4 HOH A 4 604 53 HOH HOH . 
F 4 HOH A 5 605 95 HOH HOH . 
F 4 HOH A 6 606 4 HOH HOH . 
F 4 HOH A 7 607 69 HOH HOH . 
F 4 HOH A 8 608 35 HOH HOH . 
F 4 HOH A 9 609 2 HOH HOH . 
F 4 HOH A 10 610 55 HOH HOH . 
F 4 HOH A 11 611 13 HOH HOH . 
F 4 HOH A 12 612 134 HOH HOH . 
F 4 HOH A 13 613 14 HOH HOH . 
F 4 HOH A 14 614 155 HOH HOH . 
F 4 HOH A 15 615 104 HOH HOH . 
F 4 HOH A 16 616 136 HOH HOH . 
F 4 HOH A 17 617 138 HOH HOH . 
F 4 HOH A 18 618 64 HOH HOH . 
F 4 HOH A 19 619 10 HOH HOH . 
F 4 HOH A 20 620 24 HOH HOH . 
F 4 HOH A 21 621 101 HOH HOH . 
F 4 HOH A 22 622 50 HOH HOH . 
F 4 HOH A 23 623 110 HOH HOH . 
F 4 HOH A 24 624 120 HOH HOH . 
F 4 HOH A 25 625 45 HOH HOH . 
F 4 HOH A 26 626 49 HOH HOH . 
F 4 HOH A 27 627 63 HOH HOH . 
F 4 HOH A 28 628 39 HOH HOH . 
F 4 HOH A 29 629 11 HOH HOH . 
F 4 HOH A 30 630 112 HOH HOH . 
F 4 HOH A 31 631 84 HOH HOH . 
F 4 HOH A 32 632 6 HOH HOH . 
F 4 HOH A 33 633 141 HOH HOH . 
F 4 HOH A 34 634 126 HOH HOH . 
F 4 HOH A 35 635 29 HOH HOH . 
F 4 HOH A 36 636 58 HOH HOH . 
F 4 HOH A 37 637 41 HOH HOH . 
F 4 HOH A 38 638 5 HOH HOH . 
F 4 HOH A 39 639 34 HOH HOH . 
F 4 HOH A 40 640 23 HOH HOH . 
F 4 HOH A 41 641 44 HOH HOH . 
F 4 HOH A 42 642 19 HOH HOH . 
F 4 HOH A 43 643 27 HOH HOH . 
F 4 HOH A 44 644 61 HOH HOH . 
F 4 HOH A 45 645 25 HOH HOH . 
F 4 HOH A 46 646 46 HOH HOH . 
F 4 HOH A 47 647 70 HOH HOH . 
F 4 HOH A 48 648 92 HOH HOH . 
F 4 HOH A 49 649 131 HOH HOH . 
F 4 HOH A 50 650 149 HOH HOH . 
F 4 HOH A 51 651 51 HOH HOH . 
F 4 HOH A 52 652 17 HOH HOH . 
F 4 HOH A 53 653 143 HOH HOH . 
F 4 HOH A 54 654 15 HOH HOH . 
F 4 HOH A 55 655 33 HOH HOH . 
F 4 HOH A 56 656 144 HOH HOH . 
F 4 HOH A 57 657 3 HOH HOH . 
F 4 HOH A 58 658 94 HOH HOH . 
F 4 HOH A 59 659 31 HOH HOH . 
F 4 HOH A 60 660 98 HOH HOH . 
F 4 HOH A 61 661 68 HOH HOH . 
F 4 HOH A 62 662 107 HOH HOH . 
F 4 HOH A 63 663 40 HOH HOH . 
F 4 HOH A 64 664 47 HOH HOH . 
F 4 HOH A 65 665 16 HOH HOH . 
F 4 HOH A 66 666 21 HOH HOH . 
F 4 HOH A 67 667 9 HOH HOH . 
F 4 HOH A 68 668 8 HOH HOH . 
F 4 HOH A 69 669 12 HOH HOH . 
F 4 HOH A 70 670 7 HOH HOH . 
F 4 HOH A 71 671 159 HOH HOH . 
F 4 HOH A 72 672 145 HOH HOH . 
F 4 HOH A 73 673 78 HOH HOH . 
F 4 HOH A 74 674 108 HOH HOH . 
F 4 HOH A 75 675 30 HOH HOH . 
F 4 HOH A 76 676 60 HOH HOH . 
F 4 HOH A 77 677 65 HOH HOH . 
F 4 HOH A 78 678 26 HOH HOH . 
F 4 HOH A 79 679 93 HOH HOH . 
F 4 HOH A 80 680 128 HOH HOH . 
F 4 HOH A 81 681 22 HOH HOH . 
F 4 HOH A 82 682 157 HOH HOH . 
F 4 HOH A 83 683 1 HOH HOH . 
F 4 HOH A 84 684 42 HOH HOH . 
F 4 HOH A 85 685 82 HOH HOH . 
F 4 HOH A 86 686 59 HOH HOH . 
F 4 HOH A 87 687 122 HOH HOH . 
F 4 HOH A 88 688 66 HOH HOH . 
F 4 HOH A 89 689 152 HOH HOH . 
F 4 HOH A 90 690 28 HOH HOH . 
F 4 HOH A 91 691 123 HOH HOH . 
F 4 HOH A 92 692 56 HOH HOH . 
F 4 HOH A 93 693 117 HOH HOH . 
F 4 HOH A 94 694 62 HOH HOH . 
F 4 HOH A 95 695 71 HOH HOH . 
F 4 HOH A 96 696 96 HOH HOH . 
F 4 HOH A 97 697 37 HOH HOH . 
F 4 HOH A 98 698 20 HOH HOH . 
F 4 HOH A 99 699 113 HOH HOH . 
F 4 HOH A 100 700 48 HOH HOH . 
F 4 HOH A 101 701 88 HOH HOH . 
F 4 HOH A 102 702 85 HOH HOH . 
F 4 HOH A 103 703 80 HOH HOH . 
F 4 HOH A 104 704 153 HOH HOH . 
F 4 HOH A 105 705 125 HOH HOH . 
F 4 HOH A 106 706 151 HOH HOH . 
F 4 HOH A 107 707 135 HOH HOH . 
F 4 HOH A 108 708 127 HOH HOH . 
F 4 HOH A 109 709 116 HOH HOH . 
F 4 HOH A 110 710 75 HOH HOH . 
F 4 HOH A 111 711 57 HOH HOH . 
F 4 HOH A 112 712 91 HOH HOH . 
F 4 HOH A 113 713 99 HOH HOH . 
F 4 HOH A 114 714 124 HOH HOH . 
F 4 HOH A 115 715 18 HOH HOH . 
F 4 HOH A 116 716 140 HOH HOH . 
F 4 HOH A 117 717 103 HOH HOH . 
F 4 HOH A 118 718 83 HOH HOH . 
F 4 HOH A 119 719 38 HOH HOH . 
F 4 HOH A 120 720 148 HOH HOH . 
F 4 HOH A 121 721 156 HOH HOH . 
F 4 HOH A 122 722 36 HOH HOH . 
F 4 HOH A 123 723 114 HOH HOH . 
F 4 HOH A 124 724 150 HOH HOH . 
F 4 HOH A 125 725 79 HOH HOH . 
F 4 HOH A 126 726 109 HOH HOH . 
F 4 HOH A 127 727 115 HOH HOH . 
F 4 HOH A 128 728 137 HOH HOH . 
F 4 HOH A 129 729 72 HOH HOH . 
F 4 HOH A 130 730 130 HOH HOH . 
F 4 HOH A 131 731 90 HOH HOH . 
F 4 HOH A 132 732 74 HOH HOH . 
F 4 HOH A 133 733 52 HOH HOH . 
F 4 HOH A 134 734 118 HOH HOH . 
F 4 HOH A 135 735 87 HOH HOH . 
F 4 HOH A 136 736 86 HOH HOH . 
F 4 HOH A 137 737 147 HOH HOH . 
F 4 HOH A 138 738 81 HOH HOH . 
F 4 HOH A 139 739 133 HOH HOH . 
F 4 HOH A 140 740 154 HOH HOH . 
F 4 HOH A 141 741 89 HOH HOH . 
F 4 HOH A 142 742 119 HOH HOH . 
F 4 HOH A 143 743 132 HOH HOH . 
F 4 HOH A 144 744 158 HOH HOH . 
F 4 HOH A 145 745 32 HOH HOH . 
F 4 HOH A 146 746 139 HOH HOH . 
F 4 HOH A 147 747 105 HOH HOH . 
F 4 HOH A 148 748 142 HOH HOH . 
F 4 HOH A 149 749 67 HOH HOH . 
F 4 HOH A 150 750 54 HOH HOH . 
F 4 HOH A 151 751 111 HOH HOH . 
F 4 HOH A 152 752 100 HOH HOH . 
F 4 HOH A 153 753 43 HOH HOH . 
F 4 HOH A 154 754 73 HOH HOH . 
F 4 HOH A 155 755 102 HOH HOH . 
F 4 HOH A 156 756 129 HOH HOH . 
F 4 HOH A 157 757 77 HOH HOH . 
F 4 HOH A 158 758 76 HOH HOH . 
F 4 HOH A 159 759 97 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 8M6 . . . B 2 5.577 -3.909 5.376 1 22.4 ? N1 8M6 501 A 1 
HETATM 2 N N3 8M6 . . . B 2 9.776 -5.53 9.769 1 9.82 ? N3 8M6 501 A 1 
HETATM 3 C C4 8M6 . . . B 2 7.085 -6.15 5.103 1 22.77 ? C4 8M6 501 A 1 
HETATM 4 C C5 8M6 . . . B 2 7.922 -4.576 8.416 1 12.17 ? C5 8M6 501 A 1 
HETATM 5 C C6 8M6 . . . B 2 8.122 -5.609 7.471 1 14.15 ? C6 8M6 501 A 1 
HETATM 6 C C7 8M6 . . . B 2 8.701 -4.55 9.723 1 11.27 ? C7 8M6 501 A 1 
HETATM 7 C C8 8M6 . . . B 2 9.445 -6.842 9.233 1 12.05 ? C8 8M6 501 A 1 
HETATM 8 C C10 8M6 . . . B 2 11.09 -5.244 10.303 1 10.31 ? C10 8M6 501 A 1 
HETATM 9 C C13 8M6 . . . B 2 7.247 -6.017 2.101 1 38.2 ? C13 8M6 501 A 1 
HETATM 10 C C15 8M6 . . . B 2 8.918 -5.744 0.636 1 40.04 ? C15 8M6 501 A 1 
HETATM 11 C C17 8M6 . . . B 2 3.28 -2.865 3.576 1 31.49 ? C17 8M6 501 A 1 
HETATM 12 C C20 8M6 . . . B 2 2.056 -2.677 8.333 1 38.68 ? C20 8M6 501 A 1 
HETATM 13 C C21 8M6 . . . B 2 0.385 -3.892 9.388 1 39.54 ? C21 8M6 501 A 1 
HETATM 14 C C22 8M6 . . . B 2 -0.201 -4.213 8.173 1 38.93 ? C22 8M6 501 A 1 
HETATM 15 C C24 8M6 . . . B 2 3.316 -1.822 8.449 1 37.99 ? C24 8M6 501 A 1 
HETATM 16 C C1 8M6 . . . B 2 5.49 -4.675 4.294 1 26.5 ? C1 8M6 501 A 1 
HETATM 17 C C2 8M6 . . . B 2 6.42 -4.231 6.369 1 16.69 ? C2 8M6 501 A 1 
HETATM 18 C C3 8M6 . . . B 2 7.213 -5.371 6.271 1 17.26 ? C3 8M6 501 A 1 
HETATM 19 N N2 8M6 . . . B 2 6.223 -5.781 4.167 1 28.27 ? N2 8M6 501 A 1 
HETATM 20 S S1 8M6 . . . B 2 6.766 -3.504 7.83 1 14.22 ? S1 8M6 501 A 1 
HETATM 21 C C9 8M6 . . . B 2 9.123 -6.74 7.738 1 13.72 ? C9 8M6 501 A 1 
HETATM 22 C C11 8M6 . . . B 2 11.393 -3.85 10.852 1 9.08 ? C11 8M6 501 A 1 
HETATM 23 O O1 8M6 . . . B 2 11.913 -6.099 10.31 1 12.58 ? O1 8M6 501 A 1 
HETATM 24 C C12 8M6 . . . B 2 6.119 -6.577 2.963 1 33.23 ? C12 8M6 501 A 1 
HETATM 25 O O2 8M6 . . . B 2 7.685 -4.788 2.181 1 39.48 ? O2 8M6 501 A 1 
HETATM 26 C C14 8M6 . . . B 2 8.658 -4.568 1.346 1 39.11 ? C14 8M6 501 A 1 
HETATM 27 C C16 8M6 . . . B 2 7.984 -6.711 1.14 1 39.65 ? C16 8M6 501 A 1 
HETATM 28 S S2 8M6 . . . B 2 4.337 -4.209 2.963 1 29.33 ? S2 8M6 501 A 1 
HETATM 29 C C18 8M6 . . . B 2 2.606 -3.372 4.851 1 34.04 ? C18 8M6 501 A 1 
HETATM 30 O O3 8M6 . . . B 2 2.465 -4.54 4.999 1 35.07 ? O3 8M6 501 A 1 
HETATM 31 N N4 8M6 . . . B 2 2.156 -2.445 5.878 1 36.09 ? N4 8M6 501 A 1 
HETATM 32 C C19 8M6 . . . B 2 1.521 -2.96 7.084 1 37.87 ? C19 8M6 501 A 1 
HETATM 33 N N5 8M6 . . . B 2 1.476 -3.147 9.423 1 39.14 ? N5 8M6 501 A 1 
HETATM 34 C C23 8M6 . . . B 2 0.374 -3.739 7.002 1 38.35 ? C23 8M6 501 A 1 
HETATM 35 O O4 8M6 . . . B 2 7.846 -7.314 4.925 1 22.01 ? O4 8M6 501 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           35 
#