data_7Q5X # _model_server_result.job_id nAhROFxXNzStN520Jl2ivA _model_server_result.datetime_utc '2024-11-26 03:14:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":514}' # _entry.id 7Q5X # _exptl.entry_id 7Q5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Q5X _cell.length_a 130.454 _cell.length_b 38.175 _cell.length_c 42.751 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 P N N ? 6 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 27 A CYS 201 1_555 A SG CYS 34 A CYS 208 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A NE2 HIS 139 A HIS 313 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc2 A OD1 ASP 141 A ASP 315 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc3 A NE2 HIS 200 A HIS 374 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc4 C MN MN . A MN 501 1_555 D O1 AKG . A AKG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc5 C MN MN . A MN 501 1_555 D O5 AKG . A AKG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc6 C MN MN . A MN 501 1_555 X O HOH . A HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc7 O O2 FMT . A FMT 513 1_555 Q MG MG . A MG 515 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.879 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 98 n n C O2 FMT sing 99 n n C H FMT sing 100 n n O2 HO2 FMT sing 101 n n # _atom_sites.entry_id 7Q5X _atom_sites.fract_transf_matrix[1][1] 0.007666 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026195 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN A 1 501 501 MN MN . D 4 AKG A 1 502 1801 AKG AKG . E 5 PEG A 1 503 1805 PEG PEG . F 6 FMT A 1 504 1806 FMT FMT . G 7 GOL A 1 505 1809 GOL GOL . H 6 FMT A 1 506 1810 FMT FMT . I 6 FMT A 1 507 1811 FMT FMT . J 6 FMT A 1 508 1812 FMT FMT . K 6 FMT A 1 509 1813 FMT FMT . L 6 FMT A 1 510 1814 FMT FMT . M 6 FMT A 1 511 1815 FMT FMT . N 6 FMT A 1 512 1816 FMT FMT . O 6 FMT A 1 513 1817 FMT FMT . P 6 FMT A 1 514 1818 FMT FMT . Q 8 MG A 1 515 2 MG MG . R 8 MG A 1 516 3 MG MG . S 8 MG A 1 517 6 MG MG . T 9 CL A 1 518 1 CL CL . U 9 CL A 1 519 2 CL CL . V 9 CL A 1 520 3 CL CL . W 6 FMT B 1 601 1616 FMT FMT . X 10 HOH A 1 601 107 HOH HOH . X 10 HOH A 2 602 30 HOH HOH . X 10 HOH A 3 603 32 HOH HOH . X 10 HOH A 4 604 34 HOH HOH . X 10 HOH A 5 605 79 HOH HOH . X 10 HOH A 6 606 147 HOH HOH . X 10 HOH A 7 607 81 HOH HOH . X 10 HOH A 8 608 57 HOH HOH . X 10 HOH A 9 609 36 HOH HOH . X 10 HOH A 10 610 142 HOH HOH . X 10 HOH A 11 611 38 HOH HOH . X 10 HOH A 12 612 152 HOH HOH . X 10 HOH A 13 613 75 HOH HOH . X 10 HOH A 14 614 7 HOH HOH . X 10 HOH A 15 615 137 HOH HOH . X 10 HOH A 16 616 39 HOH HOH . X 10 HOH A 17 617 83 HOH HOH . X 10 HOH A 18 618 45 HOH HOH . X 10 HOH A 19 619 153 HOH HOH . X 10 HOH A 20 620 22 HOH HOH . X 10 HOH A 21 621 90 HOH HOH . X 10 HOH A 22 622 14 HOH HOH . X 10 HOH A 23 623 110 HOH HOH . X 10 HOH A 24 624 24 HOH HOH . X 10 HOH A 25 625 53 HOH HOH . X 10 HOH A 26 626 25 HOH HOH . X 10 HOH A 27 627 84 HOH HOH . X 10 HOH A 28 628 139 HOH HOH . X 10 HOH A 29 629 8 HOH HOH . X 10 HOH A 30 630 2 HOH HOH . X 10 HOH A 31 631 11 HOH HOH . X 10 HOH A 32 632 122 HOH HOH . X 10 HOH A 33 633 9 HOH HOH . X 10 HOH A 34 634 33 HOH HOH . X 10 HOH A 35 635 29 HOH HOH . X 10 HOH A 36 636 55 HOH HOH . X 10 HOH A 37 637 15 HOH HOH . X 10 HOH A 38 638 129 HOH HOH . X 10 HOH A 39 639 3 HOH HOH . X 10 HOH A 40 640 43 HOH HOH . X 10 HOH A 41 641 41 HOH HOH . X 10 HOH A 42 642 68 HOH HOH . X 10 HOH A 43 643 82 HOH HOH . X 10 HOH A 44 644 4 HOH HOH . X 10 HOH A 45 645 27 HOH HOH . X 10 HOH A 46 646 80 HOH HOH . X 10 HOH A 47 647 35 HOH HOH . X 10 HOH A 48 648 94 HOH HOH . X 10 HOH A 49 649 5 HOH HOH . X 10 HOH A 50 650 12 HOH HOH . X 10 HOH A 51 651 1 HOH HOH . X 10 HOH A 52 652 42 HOH HOH . X 10 HOH A 53 653 76 HOH HOH . X 10 HOH A 54 654 88 HOH HOH . X 10 HOH A 55 655 19 HOH HOH . X 10 HOH A 56 656 71 HOH HOH . X 10 HOH A 57 657 138 HOH HOH . X 10 HOH A 58 658 103 HOH HOH . X 10 HOH A 59 659 50 HOH HOH . X 10 HOH A 60 660 18 HOH HOH . X 10 HOH A 61 661 48 HOH HOH . X 10 HOH A 62 662 26 HOH HOH . X 10 HOH A 63 663 91 HOH HOH . X 10 HOH A 64 664 128 HOH HOH . X 10 HOH A 65 665 21 HOH HOH . X 10 HOH A 66 666 61 HOH HOH . X 10 HOH A 67 667 44 HOH HOH . X 10 HOH A 68 668 134 HOH HOH . X 10 HOH A 69 669 115 HOH HOH . X 10 HOH A 70 670 17 HOH HOH . X 10 HOH A 71 671 23 HOH HOH . X 10 HOH A 72 672 73 HOH HOH . X 10 HOH A 73 673 87 HOH HOH . X 10 HOH A 74 674 47 HOH HOH . X 10 HOH A 75 675 123 HOH HOH . X 10 HOH A 76 676 120 HOH HOH . X 10 HOH A 77 677 28 HOH HOH . X 10 HOH A 78 678 54 HOH HOH . X 10 HOH A 79 679 46 HOH HOH . X 10 HOH A 80 680 130 HOH HOH . X 10 HOH A 81 681 126 HOH HOH . X 10 HOH A 82 682 67 HOH HOH . X 10 HOH A 83 683 56 HOH HOH . X 10 HOH A 84 684 146 HOH HOH . X 10 HOH A 85 685 86 HOH HOH . X 10 HOH A 86 686 109 HOH HOH . X 10 HOH A 87 687 96 HOH HOH . X 10 HOH A 88 688 10 HOH HOH . X 10 HOH A 89 689 77 HOH HOH . X 10 HOH A 90 690 118 HOH HOH . X 10 HOH A 91 691 119 HOH HOH . X 10 HOH A 92 692 62 HOH HOH . X 10 HOH A 93 693 51 HOH HOH . X 10 HOH A 94 694 113 HOH HOH . X 10 HOH A 95 695 98 HOH HOH . X 10 HOH A 96 696 40 HOH HOH . X 10 HOH A 97 697 59 HOH HOH . X 10 HOH A 98 698 97 HOH HOH . X 10 HOH A 99 699 132 HOH HOH . X 10 HOH A 100 700 125 HOH HOH . X 10 HOH A 101 701 127 HOH HOH . X 10 HOH A 102 702 58 HOH HOH . X 10 HOH A 103 703 31 HOH HOH . X 10 HOH A 104 704 101 HOH HOH . X 10 HOH A 105 705 102 HOH HOH . X 10 HOH A 106 706 52 HOH HOH . X 10 HOH A 107 707 70 HOH HOH . X 10 HOH A 108 708 78 HOH HOH . X 10 HOH A 109 709 72 HOH HOH . X 10 HOH A 110 710 89 HOH HOH . X 10 HOH A 111 711 133 HOH HOH . X 10 HOH A 112 712 136 HOH HOH . X 10 HOH A 113 713 150 HOH HOH . X 10 HOH A 114 714 116 HOH HOH . X 10 HOH A 115 715 99 HOH HOH . X 10 HOH A 116 716 151 HOH HOH . X 10 HOH A 117 717 148 HOH HOH . X 10 HOH A 118 718 111 HOH HOH . X 10 HOH A 119 719 149 HOH HOH . X 10 HOH A 120 720 60 HOH HOH . X 10 HOH A 121 721 104 HOH HOH . X 10 HOH A 122 722 74 HOH HOH . X 10 HOH A 123 723 121 HOH HOH . X 10 HOH A 124 724 65 HOH HOH . X 10 HOH A 125 725 93 HOH HOH . X 10 HOH A 126 726 135 HOH HOH . X 10 HOH A 127 727 66 HOH HOH . X 10 HOH A 128 728 106 HOH HOH . X 10 HOH A 129 729 124 HOH HOH . X 10 HOH A 130 730 108 HOH HOH . Y 10 HOH B 1 701 114 HOH HOH . Y 10 HOH B 2 702 64 HOH HOH . Y 10 HOH B 3 703 6 HOH HOH . Y 10 HOH B 4 704 16 HOH HOH . Y 10 HOH B 5 705 95 HOH HOH . Y 10 HOH B 6 706 37 HOH HOH . Y 10 HOH B 7 707 140 HOH HOH . Y 10 HOH B 8 708 20 HOH HOH . Y 10 HOH B 9 709 13 HOH HOH . Y 10 HOH B 10 710 63 HOH HOH . Y 10 HOH B 11 711 105 HOH HOH . Y 10 HOH B 12 712 85 HOH HOH . Y 10 HOH B 13 713 49 HOH HOH . Y 10 HOH B 14 714 131 HOH HOH . Y 10 HOH B 15 715 145 HOH HOH . Y 10 HOH B 16 716 117 HOH HOH . Y 10 HOH B 17 717 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . P 6 34.842 22.393 3.254 1 26.58 ? C FMT 514 A 1 HETATM 2 O O1 FMT . . . P 6 35.009 22.812 2.138 1 42.34 ? O1 FMT 514 A 1 HETATM 3 O O2 FMT . . . P 6 33.635 22.347 3.651 1 33.5 ? O2 FMT 514 A 1 HETATM 4 H H FMT . . . P 6 35.662 22.533 3.958 1 31.9 ? H FMT 514 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #