data_7Q62
#
_model_server_result.job_id            aAyyFEI5nkwaXtfym8-6sw 
_model_server_result.datetime_utc      '2024-10-10 06:26:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7q62 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1503}' 
#
_entry.id    7Q62 
#
_exptl.entry_id    7Q62 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7Q62 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Q62 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 40 1_555 A SG CYS 60 A CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf2 A SG CYS 223 A CYS 241 1_555 A SG CYS 273 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 A SG CYS 241 A CYS 259 1_555 A SG CYS 261 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
disulf ? disulf4 A SG CYS 446 A CYS 464 1_555 A SG CYS 539 A CYS 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf5 A SG CYS 571 A CYS 589 1_555 A SG CYS 751 A CYS 769 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 A SG CYS 615 A CYS 633 1_555 A SG CYS 676 A CYS 694 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 A SG CYS 801 A CYS 819 1_555 A SG CYS 829 A CYS 847 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 A SG CYS 827 A CYS 845 1_555 A SG CYS 863 A CYS 881 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf9 A SG CYS 901 A CYS 919 1_555 A SG CYS 1289 A CYS 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf10 A SG CYS 1057 A CYS 1075 1_555 A SG CYS 1105 A CYS 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf11 B SG CYS 22 B CYS 40 1_555 B SG CYS 60 B CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf12 B SG CYS 223 B CYS 241 1_555 B SG CYS 273 B CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf13 B SG CYS 241 B CYS 259 1_555 B SG CYS 261 B CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf14 B SG CYS 446 B CYS 464 1_555 B SG CYS 539 B CYS 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf15 B SG CYS 571 B CYS 589 1_555 B SG CYS 751 B CYS 769 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf16 B SG CYS 615 B CYS 633 1_555 B SG CYS 676 B CYS 694 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf17 B SG CYS 801 B CYS 819 1_555 B SG CYS 829 B CYS 847 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf18 B SG CYS 827 B CYS 845 1_555 B SG CYS 863 B CYS 881 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 102 A ASN 120 1_555 C C1 NAG . A NAG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale2 A ND2 ASN 310 A ASN 328 1_555 D C1 NAG . A NAG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale3 A ND2 ASN 591 A ASN 609 1_555 E C1 NAG . A NAG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? 
covale ? covale4 A ND2 ASN 839 A ASN 857 1_555 F C1 NAG . A NAG 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? 
covale ? covale5 A ND2 ASN 849 A ASN 867 1_555 G C1 NAG . A NAG 1505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale6 B ND2 ASN 102 B ASN 120 1_555 H C1 NAG . B NAG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale7 B ND2 ASN 310 B ASN 328 1_555 I C1 NAG . B NAG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale8 B ND2 ASN 591 B ASN 609 1_555 J C1 NAG . B NAG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale9 B ND2 ASN 839 B ASN 857 1_555 K C1 NAG . B NAG 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale10 B ND2 ASN 849 B ASN 867 1_555 L C1 NAG . B NAG 1505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7Q62 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 1501 1322 NAG NAG . 
D 2 NAG A 1 1502 1323 NAG NAG . 
E 2 NAG A 1 1503 1324 NAG NAG . 
F 2 NAG A 1 1504 1325 NAG NAG . 
G 2 NAG A 1 1505 1326 NAG NAG . 
H 2 NAG B 1 1501 906 NAG NAG . 
I 2 NAG B 1 1502 907 NAG NAG . 
J 2 NAG B 1 1503 908 NAG NAG . 
K 2 NAG B 1 1504 909 NAG NAG . 
L 2 NAG B 1 1505 910 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . J 2 175.264 151.661 195.626 1 125.78 ? C1 NAG 1503 B 1 
HETATM 2 C C2 NAG . . . J 2 176.365 150.587 195.391 1 125.78 ? C2 NAG 1503 B 1 
HETATM 3 C C3 NAG . . . J 2 177.626 150.863 196.234 1 125.78 ? C3 NAG 1503 B 1 
HETATM 4 C C4 NAG . . . J 2 178.093 152.304 196.1 1 125.78 ? C4 NAG 1503 B 1 
HETATM 5 C C5 NAG . . . J 2 176.952 153.233 196.479 1 125.78 ? C5 NAG 1503 B 1 
HETATM 6 C C6 NAG . . . J 2 177.306 154.694 196.338 1 125.78 ? C6 NAG 1503 B 1 
HETATM 7 C C7 NAG . . . J 2 175.423 148.66 196.728 1 125.78 ? C7 NAG 1503 B 1 
HETATM 8 C C8 NAG . . . J 2 175.04 147.218 196.624 1 125.78 ? C8 NAG 1503 B 1 
HETATM 9 N N2 NAG . . . J 2 175.889 149.218 195.59 1 125.78 ? N2 NAG 1503 B 1 
HETATM 10 O O3 NAG . . . J 2 178.669 149.983 195.831 1 125.78 ? O3 NAG 1503 B 1 
HETATM 11 O O4 NAG . . . J 2 179.2 152.54 196.962 1 125.78 ? O4 NAG 1503 B 1 
HETATM 12 O O5 NAG . . . J 2 175.853 152.991 195.592 1 125.78 ? O5 NAG 1503 B 1 
HETATM 13 O O6 NAG . . . J 2 176.147 155.492 196.141 1 125.78 ? O6 NAG 1503 B 1 
HETATM 14 O O7 NAG . . . J 2 175.301 149.278 197.789 1 125.78 ? O7 NAG 1503 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#