data_7Q6I
#
_model_server_result.job_id            PtvUGtvCCpSv6l_BYFRF3Q 
_model_server_result.datetime_utc      '2024-11-09 02:33:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7q6i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":501}' 
#
_entry.id    7Q6I 
#
_exptl.entry_id    7Q6I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    16 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.76 
_cell.angle_gamma         90 
_cell.entry_id            7Q6I 
_cell.length_a            98.692 
_cell.length_b            119.993 
_cell.length_c            329.788 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Q6I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
? monomeric 1 author_defined_assembly 7 
? monomeric 1 author_defined_assembly 8 
? monomeric 1 author_defined_assembly 9 
? monomeric 1 author_defined_assembly 10 
? monomeric 1 author_defined_assembly 11 
? monomeric 1 author_defined_assembly 12 
? monomeric 1 author_defined_assembly 13 
? monomeric 1 author_defined_assembly 14 
? monomeric 1 author_defined_assembly 15 
? monomeric 1 author_defined_assembly 16 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,Q,S,T 1 1 
B,U,V 2 1 
C,R,W,X 3 1 
D,Y,Z 4 1 
E,AA,BA 5 1 
F,CA,DA 6 1 
G,EA,FA 7 1 
H,GA,HA 8 1 
I,IA,JA 9 1 
J,KA,LA 10 1 
K,MA,NA 11 1 
L,OA,PA 12 1 
M,QA,RA 13 1 
N,SA,TA 14 1 
O,UA,VA 15 1 
P,WA,XA 16 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 S N N 
? 3 U N N 
? 3 W N N 
? 3 Y N N 
? 3 AA N N 
? 3 CA N N 
? 3 EA N N 
? 3 GA N N 
? 3 IA N N 
? 3 KA N N 
? 3 MA N N 
? 3 OA N N 
? 3 QA N N 
? 3 SA N N 
? 3 UA N N 
? 3 WA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 S O1G ATP . A ATP 501 1_555 T MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? 
metalc ? metalc2 S O2G ATP . A ATP 501 1_555 T MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? 
metalc ? metalc3 U O1G ATP . B ATP 501 1_555 V MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? 
metalc ? metalc4 U O1B ATP . B ATP 501 1_555 V MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? 
metalc ? metalc5 C OD2 ASP 210 C ASP 210 1_555 X MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? 
metalc ? metalc6 W O2G ATP . C ATP 501 1_555 X MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc7 W O1B ATP . C ATP 501 1_555 X MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? 
metalc ? metalc8 Y O2G ATP . D ATP 501 1_555 Z MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc9 Y O1B ATP . D ATP 501 1_555 Z MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? 
metalc ? metalc10 AA O3B ATP . E ATP 501 1_555 BA MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc11 CA O1G ATP . F ATP 501 1_555 DA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? 
metalc ? metalc12 CA O1B ATP . F ATP 501 1_555 DA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? 
metalc ? metalc13 EA O3B ATP . G ATP 501 1_555 FA MG MG . G MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc14 GA O1G ATP . H ATP 501 1_555 HA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? 
metalc ? metalc15 GA O2G ATP . H ATP 501 1_555 HA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.98 ? 
metalc ? metalc16 GA O1B ATP . H ATP 501 1_555 HA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
metalc ? metalc17 IA O1B ATP . I ATP 501 1_555 JA MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? 
metalc ? metalc18 KA O3B ATP . J ATP 501 1_555 LA MG MG . J MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? 
metalc ? metalc19 MA O1G ATP . K ATP 501 1_555 NA MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? 
metalc ? metalc20 MA O3B ATP . K ATP 501 1_555 NA MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? 
metalc ? metalc21 OA O1G ATP . L ATP 501 1_555 PA MG MG . L MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? 
metalc ? metalc22 M OD2 ASP 210 M ASP 210 1_555 RA MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.985 ? 
metalc ? metalc23 QA O1G ATP . M ATP 501 1_555 RA MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc24 QA O1B ATP . M ATP 501 1_555 RA MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? 
metalc ? metalc25 SA O1G ATP . N ATP 501 1_555 TA MG MG . N MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? 
metalc ? metalc26 SA O1B ATP . N ATP 501 1_555 TA MG MG . N MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc27 UA O1G ATP . O ATP 501 1_555 VA MG MG . O MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc28 P OD1 ASP 14 P ASP 14 1_555 XA MG MG . P MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.95 ? 
metalc ? metalc29 WA O3B ATP . P ATP 501 1_555 XA MG MG . P MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     7Q6I 
_atom_sites.fract_transf_matrix[1][1]    0.010133 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000666 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008334 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003039 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 3 ATP A 1 501 501 ATP ATP . 
T 4 MG A 1 502 502 MG MG . 
U 3 ATP B 1 501 501 ATP ATP . 
V 4 MG B 1 502 502 MG MG . 
W 3 ATP C 1 501 501 ATP ATP . 
X 4 MG C 1 502 502 MG MG . 
Y 3 ATP D 1 501 501 ATP ATP . 
Z 4 MG D 1 502 502 MG MG . 
AA 3 ATP E 1 501 501 ATP ATP . 
BA 4 MG E 1 502 502 MG MG . 
CA 3 ATP F 1 501 501 ATP ATP . 
DA 4 MG F 1 502 502 MG MG . 
EA 3 ATP G 1 501 501 ATP ATP . 
FA 4 MG G 1 502 502 MG MG . 
GA 3 ATP H 1 501 501 ATP ATP . 
HA 4 MG H 1 502 502 MG MG . 
IA 3 ATP I 1 501 501 ATP ATP . 
JA 4 MG I 1 502 502 MG MG . 
KA 3 ATP J 1 501 501 ATP ATP . 
LA 4 MG J 1 502 502 MG MG . 
MA 3 ATP K 1 501 501 ATP ATP . 
NA 4 MG K 1 502 502 MG MG . 
OA 3 ATP L 1 501 501 ATP ATP . 
PA 4 MG L 1 502 502 MG MG . 
QA 3 ATP M 1 501 501 ATP ATP . 
RA 4 MG M 1 502 502 MG MG . 
SA 3 ATP N 1 501 501 ATP ATP . 
TA 4 MG N 1 502 502 MG MG . 
UA 3 ATP O 1 501 501 ATP ATP . 
VA 4 MG O 1 502 502 MG MG . 
WA 3 ATP P 1 501 501 ATP ATP . 
XA 4 MG P 1 502 502 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . S 3 -24.019 -4.025 -116.396 1 86.83 ? PG ATP 501 A 1 
HETATM 2 O O1G ATP . . . S 3 -24.158 -3.211 -117.639 1 77.46 ? O1G ATP 501 A 1 
HETATM 3 O O2G ATP . . . S 3 -24.662 -3.375 -115.164 1 87.49 -1 O2G ATP 501 A 1 
HETATM 4 O O3G ATP . . . S 3 -24.538 -5.46 -116.534 1 61.26 ? O3G ATP 501 A 1 
HETATM 5 P PB ATP . . . S 3 -21.039 -3.825 -116.553 1 81.24 ? PB ATP 501 A 1 
HETATM 6 O O1B ATP . . . S 3 -20.739 -2.383 -116.407 1 68.3 -1 O1B ATP 501 A 1 
HETATM 7 O O2B ATP . . . S 3 -20.051 -4.78 -115.885 1 79.27 ? O2B ATP 501 A 1 
HETATM 8 O O3B ATP . . . S 3 -22.482 -4.192 -116.002 1 79.21 ? O3B ATP 501 A 1 
HETATM 9 P PA ATP . . . S 3 -20.378 -3.945 -119.429 1 60.15 ? PA ATP 501 A 1 
HETATM 10 O O1A ATP . . . S 3 -20.891 -2.714 -120.062 1 73.83 -1 O1A ATP 501 A 1 
HETATM 11 O O2A ATP . . . S 3 -18.885 -3.926 -119.097 1 56.39 ? O2A ATP 501 A 1 
HETATM 12 O O3A ATP . . . S 3 -21.15 -4.261 -118.079 1 60.09 ? O3A ATP 501 A 1 
HETATM 13 O O5' ATP . . . S 3 -20.671 -5.208 -120.33 1 64.31 ? O5' ATP 501 A 1 
HETATM 14 C C5' ATP . . . S 3 -19.808 -6.365 -120.305 1 76.76 ? C5' ATP 501 A 1 
HETATM 15 C C4' ATP . . . S 3 -20.259 -7.311 -121.389 1 71.3 ? C4' ATP 501 A 1 
HETATM 16 O O4' ATP . . . S 3 -19.756 -6.855 -122.663 1 69.7 ? O4' ATP 501 A 1 
HETATM 17 C C3' ATP . . . S 3 -19.813 -8.769 -121.227 1 72.51 ? C3' ATP 501 A 1 
HETATM 18 O O3' ATP . . . S 3 -20.934 -9.645 -121.22 1 76.96 ? O3' ATP 501 A 1 
HETATM 19 C C2' ATP . . . S 3 -18.901 -9.018 -122.437 1 64.31 ? C2' ATP 501 A 1 
HETATM 20 O O2' ATP . . . S 3 -19.088 -10.323 -122.975 1 86.19 ? O2' ATP 501 A 1 
HETATM 21 C C1' ATP . . . S 3 -19.402 -7.977 -123.434 1 62.26 ? C1' ATP 501 A 1 
HETATM 22 N N9 ATP . . . S 3 -18.409 -7.563 -124.419 1 63.28 ? N9 ATP 501 A 1 
HETATM 23 C C8 ATP . . . S 3 -17.276 -6.824 -124.198 1 70.23 ? C8 ATP 501 A 1 
HETATM 24 N N7 ATP . . . S 3 -16.564 -6.6 -125.277 1 69.07 ? N7 ATP 501 A 1 
HETATM 25 C C5 ATP . . . S 3 -17.28 -7.236 -126.28 1 62.98 ? C5 ATP 501 A 1 
HETATM 26 C C6 ATP . . . S 3 -17.06 -7.375 -127.664 1 63.22 ? C6 ATP 501 A 1 
HETATM 27 N N6 ATP . . . S 3 -16.008 -6.857 -128.306 1 77.6 ? N6 ATP 501 A 1 
HETATM 28 N N1 ATP . . . S 3 -17.97 -8.073 -128.378 1 61.26 ? N1 ATP 501 A 1 
HETATM 29 C C2 ATP . . . S 3 -19.022 -8.595 -127.743 1 60.35 ? C2 ATP 501 A 1 
HETATM 30 N N3 ATP . . . S 3 -19.335 -8.527 -126.448 1 61.47 ? N3 ATP 501 A 1 
HETATM 31 C C4 ATP . . . S 3 -18.419 -7.833 -125.765 1 64.67 ? C4 ATP 501 A 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    130 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#