data_7Q7C # _model_server_result.job_id 3ZYxTsb2qX9oR5-L3C4EUA _model_server_result.datetime_utc '2024-11-15 02:26:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q7c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7Q7C # _exptl.entry_id 7Q7C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Q7C _cell.length_a 84.44 _cell.length_b 84.44 _cell.length_c 116.61 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q7C _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall 'P 4w 2c' _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 161 A ASN 163 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc2 B MG MG . A MG 401 1_555 C O3B ADP . A ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc3 B MG MG . A MG 401 1_555 C O1A ADP . A ADP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc4 B MG MG . A MG 401 1_555 D O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc5 B MG MG . A MG 401 1_555 D O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 7Q7C _atom_sites.fract_transf_matrix[1][1] 0.011843 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011843 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008576 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 1 MG MG . C 3 ADP A 1 402 1 ADP ADP . D 4 HOH A 1 501 9 HOH HOH . D 4 HOH A 2 502 4 HOH HOH . D 4 HOH A 3 503 10 HOH HOH . D 4 HOH A 4 504 11 HOH HOH . D 4 HOH A 5 505 5 HOH HOH . D 4 HOH A 6 506 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 3 24.606 90.118 -3.703 1 77.38 ? PB ADP 402 A 1 HETATM 2 O O1B ADP . . . C 3 23.56 89.457 -4.629 1 82.15 -1 O1B ADP 402 A 1 HETATM 3 O O2B ADP . . . C 3 25.879 90.321 -4.446 1 79.39 ? O2B ADP 402 A 1 HETATM 4 O O3B ADP . . . C 3 24.06 91.47 -3.225 1 81.89 -1 O3B ADP 402 A 1 HETATM 5 P PA ADP . . . C 3 24.354 89.269 -0.931 1 76.53 ? PA ADP 402 A 1 HETATM 6 O O1A ADP . . . C 3 23.834 90.64 -0.683 1 79.5 ? O1A ADP 402 A 1 HETATM 7 O O2A ADP . . . C 3 25.507 88.948 0.069 1 78.96 -1 O2A ADP 402 A 1 HETATM 8 O O3A ADP . . . C 3 24.879 89.183 -2.437 1 76.53 ? O3A ADP 402 A 1 HETATM 9 O O5' ADP . . . C 3 23.127 88.166 -0.734 1 80.41 ? O5' ADP 402 A 1 HETATM 10 C C5' ADP . . . C 3 21.91 88.413 -1.401 1 83.39 ? C5' ADP 402 A 1 HETATM 11 C C4' ADP . . . C 3 20.769 87.99 -0.518 1 81.7 ? C4' ADP 402 A 1 HETATM 12 O O4' ADP . . . C 3 21.023 86.691 0.08 1 82.42 ? O4' ADP 402 A 1 HETATM 13 C C3' ADP . . . C 3 20.638 88.932 0.682 1 82.3 ? C3' ADP 402 A 1 HETATM 14 O O3' ADP . . . C 3 19.826 90.053 0.355 1 84.75 ? O3' ADP 402 A 1 HETATM 15 C C2' ADP . . . C 3 19.963 88.025 1.71 1 80.94 ? C2' ADP 402 A 1 HETATM 16 O O2' ADP . . . C 3 18.55 88.048 1.504 1 80.01 ? O2' ADP 402 A 1 HETATM 17 C C1' ADP . . . C 3 20.526 86.635 1.405 1 81.39 ? C1' ADP 402 A 1 HETATM 18 N N9 ADP . . . C 3 21.524 86.328 2.246 1 83.02 ? N9 ADP 402 A 1 HETATM 19 C C8 ADP . . . C 3 22.827 86.677 2.093 1 83.37 ? C8 ADP 402 A 1 HETATM 20 N N7 ADP . . . C 3 23.545 86.195 3.131 1 80.73 ? N7 ADP 402 A 1 HETATM 21 C C5 ADP . . . C 3 22.702 85.534 3.949 1 79.47 ? C5 ADP 402 A 1 HETATM 22 C C6 ADP . . . C 3 22.889 84.845 5.156 1 78.01 ? C6 ADP 402 A 1 HETATM 23 N N6 ADP . . . C 3 24.106 84.754 5.711 1 78.92 ? N6 ADP 402 A 1 HETATM 24 N N1 ADP . . . C 3 21.826 84.271 5.759 1 78.67 ? N1 ADP 402 A 1 HETATM 25 C C2 ADP . . . C 3 20.619 84.392 5.161 1 81.28 ? C2 ADP 402 A 1 HETATM 26 N N3 ADP . . . C 3 20.39 85.028 4.028 1 81.85 ? N3 ADP 402 A 1 HETATM 27 C C4 ADP . . . C 3 21.424 85.616 3.392 1 81.38 ? C4 ADP 402 A 1 HETATM 28 H "H5'1" ADP . . . C 3 21.836 89.36 -1.598 1 100.07 ? "H5'1" ADP 402 A 1 HETATM 29 H "H5'2" ADP . . . C 3 21.887 87.907 -2.228 1 100.07 ? "H5'2" ADP 402 A 1 HETATM 30 H H4' ADP . . . C 3 19.953 87.975 -1.042 1 98.04 ? H4' ADP 402 A 1 HETATM 31 H H3' ADP . . . C 3 21.494 89.265 0.996 1 98.77 ? H3' ADP 402 A 1 HETATM 32 H HO3' ADP . . . C 3 20.219 90.768 0.594 1 101.71 ? HO3' ADP 402 A 1 HETATM 33 H H2' ADP . . . C 3 20.177 88.292 2.618 1 97.13 ? H2' ADP 402 A 1 HETATM 34 H HO2' ADP . . . C 3 18.357 87.607 0.803 1 96.02 ? HO2' ADP 402 A 1 HETATM 35 H H1' ADP . . . C 3 19.811 85.982 1.469 1 97.67 ? H1' ADP 402 A 1 HETATM 36 H H8 ADP . . . C 3 23.171 87.172 1.384 1 100.05 ? H8 ADP 402 A 1 HETATM 37 H HN61 ADP . . . C 3 24.213 84.316 6.443 1 94.71 ? HN61 ADP 402 A 1 HETATM 38 H HN62 ADP . . . C 3 24.779 85.134 5.334 1 94.71 ? HN62 ADP 402 A 1 HETATM 39 H H2 ADP . . . C 3 19.892 83.993 5.582 1 97.55 ? H2 ADP 402 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 39 #