data_7Q7D # _model_server_result.job_id KnxF9xFUvKRtHwhVQ9R7Kw _model_server_result.datetime_utc '2024-11-29 09:28:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q7d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7Q7D # _exptl.entry_id 7Q7D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Q7D _cell.length_a 83.89 _cell.length_b 83.89 _cell.length_c 116.26 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q7D _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall 'P 4w 2c' _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 161 A ASN 163 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc2 A OD2 ASP 177 A ASP 179 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc3 B O1B ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc4 B O1B ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc5 B O1A ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc6 B O1A ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc7 C MG MG . A MG 402 1_555 D O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc8 C MG MG . A MG 402 1_555 D O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7Q7D _atom_sites.fract_transf_matrix[1][1] 0.01192 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008601 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 401 1 ATP ATP . C 3 MG A 1 402 1 MG MG . D 4 HOH A 1 501 9 HOH HOH . D 4 HOH A 2 502 1 HOH HOH . D 4 HOH A 3 503 18 HOH HOH . D 4 HOH A 4 504 14 HOH HOH . D 4 HOH A 5 505 12 HOH HOH . D 4 HOH A 6 506 20 HOH HOH . D 4 HOH A 7 507 3 HOH HOH . D 4 HOH A 8 508 11 HOH HOH . D 4 HOH A 9 509 21 HOH HOH . D 4 HOH A 10 510 4 HOH HOH . D 4 HOH A 11 511 15 HOH HOH . D 4 HOH A 12 512 2 HOH HOH . D 4 HOH A 13 513 5 HOH HOH . D 4 HOH A 14 514 13 HOH HOH . D 4 HOH A 15 515 19 HOH HOH . D 4 HOH A 16 516 10 HOH HOH . D 4 HOH A 17 517 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . B . B 2 26.766 90.527 -4.805 0.56 73.66 ? PG ATP 401 A 1 HETATM 2 O O1G ATP . B . B 2 27.726 90.06 -5.915 0.56 76.82 ? O1G ATP 401 A 1 HETATM 3 O O2G ATP . B . B 2 26.256 91.925 -5.092 0.56 73.32 ? O2G ATP 401 A 1 HETATM 4 O O3G ATP . B . B 2 27.467 90.502 -3.462 0.56 76.42 ? O3G ATP 401 A 1 HETATM 5 P PB ATP . A . B 2 24.231 89.605 -3.816 0.44 68.81 ? PB ATP 401 A 1 HETATM 6 P PB ATP . B . B 2 24.164 89.594 -3.706 0.56 68.42 ? PB ATP 401 A 1 HETATM 7 O O1B ATP . A . B 2 23.387 90.817 -3.446 0.44 65.52 ? O1B ATP 401 A 1 HETATM 8 O O1B ATP . B . B 2 23.781 91.033 -3.391 0.56 65.45 ? O1B ATP 401 A 1 HETATM 9 O O2B ATP . A . B 2 23.427 88.689 -4.69 0.44 66.32 ? O2B ATP 401 A 1 HETATM 10 O O2B ATP . B . B 2 22.982 88.877 -4.288 0.56 65.96 ? O2B ATP 401 A 1 HETATM 11 O O3B ATP . A . B 2 25.567 90.092 -4.619 0.44 69.17 ? O3B ATP 401 A 1 HETATM 12 O O3B ATP . B . B 2 25.413 89.587 -4.752 0.56 68.3 ? O3B ATP 401 A 1 HETATM 13 P PA ATP . A . B 2 24.129 88.921 -0.876 0.44 55.34 ? PA ATP 401 A 1 HETATM 14 P PA ATP . B . B 2 23.998 88.841 -0.803 0.56 59.93 ? PA ATP 401 A 1 HETATM 15 O O1A ATP . A . B 2 23.538 90.302 -0.663 0.44 58.8 ? O1A ATP 401 A 1 HETATM 16 O O1A ATP . B . B 2 23.299 90.171 -0.583 0.56 58.94 ? O1A ATP 401 A 1 HETATM 17 O O2A ATP . A . B 2 25.296 88.721 0.092 0.44 57.43 ? O2A ATP 401 A 1 HETATM 18 O O2A ATP . B . B 2 25.101 88.674 0.241 0.56 57.29 ? O2A ATP 401 A 1 HETATM 19 O O3A ATP . A . B 2 24.693 88.817 -2.433 0.44 61.34 ? O3A ATP 401 A 1 HETATM 20 O O3A ATP . B . B 2 24.67 88.853 -2.316 0.56 61.2 ? O3A ATP 401 A 1 HETATM 21 O O5' ATP . A . B 2 23.017 87.808 -0.629 0.44 57.71 ? O5' ATP 401 A 1 HETATM 22 O O5' ATP . B . B 2 22.945 87.651 -0.704 0.56 58.13 ? O5' ATP 401 A 1 HETATM 23 C C5' ATP . A . B 2 21.816 87.793 -1.455 0.44 55.64 ? C5' ATP 401 A 1 HETATM 24 C C5' ATP . B . B 2 21.706 87.721 -1.468 0.56 55.67 ? C5' ATP 401 A 1 HETATM 25 C C4' ATP . A . B 2 20.631 87.459 -0.582 0.44 55.61 ? C4' ATP 401 A 1 HETATM 26 C C4' ATP . B . B 2 20.558 87.42 -0.538 0.56 55.62 ? C4' ATP 401 A 1 HETATM 27 O O4' ATP . A . B 2 20.882 86.188 0.07 0.44 55.57 ? O4' ATP 401 A 1 HETATM 28 O O4' ATP . B . B 2 20.82 86.162 0.131 0.56 55.57 ? O4' ATP 401 A 1 HETATM 29 C C3' ATP . A . B 2 20.477 88.492 0.529 0.44 55.59 ? C3' ATP 401 A 1 HETATM 30 C C3' ATP . B . B 2 20.474 88.477 0.56 0.56 55.6 ? C3' ATP 401 A 1 HETATM 31 O O3' ATP . A . B 2 19.538 89.503 0.155 0.44 55.76 ? O3' ATP 401 A 1 HETATM 32 O O3' ATP . B . B 2 19.584 89.531 0.193 0.56 55.72 ? O3' ATP 401 A 1 HETATM 33 C C2' ATP . A . B 2 19.954 87.68 1.71 0.44 55.44 ? C2' ATP 401 A 1 HETATM 34 C C2' ATP . B . B 2 19.935 87.693 1.753 0.56 55.38 ? C2' ATP 401 A 1 HETATM 35 O O2' ATP . A . B 2 18.519 87.683 1.716 0.44 55.28 ? O2' ATP 401 A 1 HETATM 36 O O2' ATP . B . B 2 18.5 87.718 1.747 0.56 55.16 ? O2' ATP 401 A 1 HETATM 37 C C1' ATP . A . B 2 20.46 86.269 1.415 0.44 55.5 ? C1' ATP 401 A 1 HETATM 38 C C1' ATP . B . B 2 20.425 86.271 1.483 0.56 55.46 ? C1' ATP 401 A 1 HETATM 39 N N9 ATP . A . B 2 21.552 85.943 2.26 0.44 57.24 ? N9 ATP 401 A 1 HETATM 40 N N9 ATP . B . B 2 21.53 85.95 2.313 0.56 60.04 ? N9 ATP 401 A 1 HETATM 41 C C8 ATP . A . B 2 22.843 86.257 2.075 0.44 56.53 ? C8 ATP 401 A 1 HETATM 42 C C8 ATP . B . B 2 22.817 86.276 2.118 0.56 56.15 ? C8 ATP 401 A 1 HETATM 43 N N7 ATP . A . B 2 23.57 85.766 3.102 0.44 55.85 ? N7 ATP 401 A 1 HETATM 44 N N7 ATP . B . B 2 23.56 85.783 3.134 0.56 55.34 ? N7 ATP 401 A 1 HETATM 45 C C5 ATP . A . B 2 22.736 85.135 3.942 0.44 55.45 ? C5 ATP 401 A 1 HETATM 46 C C5 ATP . B . B 2 22.74 85.137 3.976 0.56 57.84 ? C5 ATP 401 A 1 HETATM 47 C C6 ATP . A . B 2 22.911 84.456 5.137 0.44 55.53 ? C6 ATP 401 A 1 HETATM 48 C C6 ATP . B . B 2 22.932 84.45 5.162 0.56 55.51 ? C6 ATP 401 A 1 HETATM 49 N N6 ATP . A . B 2 24.117 84.315 5.7 0.44 55.52 ? N6 ATP 401 A 1 HETATM 50 N N6 ATP . B . B 2 24.146 84.315 5.712 0.56 55.5 ? N6 ATP 401 A 1 HETATM 51 N N1 ATP . A . B 2 21.861 83.929 5.744 0.44 55.54 ? N1 ATP 401 A 1 HETATM 52 N N1 ATP . B . B 2 21.894 83.908 5.775 0.56 55.52 ? N1 ATP 401 A 1 HETATM 53 C C2 ATP . A . B 2 20.637 84.067 5.18 0.44 55.52 ? C2 ATP 401 A 1 HETATM 54 C C2 ATP . B . B 2 20.663 84.039 5.225 0.56 55.5 ? C2 ATP 401 A 1 HETATM 55 N N3 ATP . A . B 2 20.406 84.7 4.048 0.44 55.5 ? N3 ATP 401 A 1 HETATM 56 N N3 ATP . B . B 2 20.414 84.68 4.101 0.56 55.47 ? N3 ATP 401 A 1 HETATM 57 C C4 ATP . A . B 2 21.454 85.249 3.404 0.44 59.39 ? C4 ATP 401 A 1 HETATM 58 C C4 ATP . B . B 2 21.45 85.243 3.452 0.56 56.73 ? C4 ATP 401 A 1 HETATM 59 H "H5'1" ATP . A . B 2 21.909 87.124 -2.152 0.44 66.84 ? "H5'1" ATP 401 A 1 HETATM 60 H "H5'1" ATP . B . B 2 21.727 87.069 -2.186 0.56 66.87 ? "H5'1" ATP 401 A 1 HETATM 61 H "H5'2" ATP . A . B 2 21.689 88.665 -1.86 0.44 66.84 ? "H5'2" ATP 401 A 1 HETATM 62 H "H5'2" ATP . B . B 2 21.602 88.61 -1.842 0.56 66.87 ? "H5'2" ATP 401 A 1 HETATM 63 H H4' ATP . A . B 2 19.809 87.425 -1.095 0.44 66.8 ? H4' ATP 401 A 1 HETATM 64 H H4' ATP . B . B 2 19.713 87.388 -1.014 0.56 66.82 ? H4' ATP 401 A 1 HETATM 65 H H3' ATP . A . B 2 21.327 88.907 0.74 0.44 66.78 ? H3' ATP 401 A 1 HETATM 66 H H3' ATP . B . B 2 21.346 88.859 0.751 0.56 66.79 ? H3' ATP 401 A 1 HETATM 67 H HO3' ATP . A . B 2 19.808 90.258 0.436 0.44 66.99 ? HO3' ATP 401 A 1 HETATM 68 H HO3' ATP . B . B 2 19.89 90.272 0.475 0.56 66.93 ? HO3' ATP 401 A 1 HETATM 69 H H2' ATP . A . B 2 20.339 88.013 2.536 0.44 66.6 ? H2' ATP 401 A 1 HETATM 70 H H2' ATP . B . B 2 20.318 88.032 2.577 0.56 66.53 ? H2' ATP 401 A 1 HETATM 71 H HO2' ATP . A . B 2 18.235 88.43 1.426 0.44 66.41 ? HO2' ATP 401 A 1 HETATM 72 H HO2' ATP . B . B 2 18.231 88.451 1.412 0.56 66.26 ? HO2' ATP 401 A 1 HETATM 73 H H1' ATP . A . B 2 19.708 85.67 1.54 0.44 66.67 ? H1' ATP 401 A 1 HETATM 74 H H1' ATP . B . B 2 19.671 85.681 1.639 0.56 66.63 ? H1' ATP 401 A 1 HETATM 75 H H8 ATP . A . B 2 23.183 86.736 1.354 0.44 67.9 ? H8 ATP 401 A 1 HETATM 76 H H8 ATP . B . B 2 23.146 86.764 1.398 0.56 67.45 ? H8 ATP 401 A 1 HETATM 77 H HN61 ATP . A . B 2 24.198 83.886 6.441 0.44 66.69 ? HN61 ATP 401 A 1 HETATM 78 H HN61 ATP . B . B 2 24.237 83.883 6.45 0.56 66.67 ? HN61 ATP 401 A 1 HETATM 79 H HN62 ATP . A . B 2 24.811 84.654 5.321 0.44 66.69 ? HN62 ATP 401 A 1 HETATM 80 H HN62 ATP . B . B 2 24.832 84.661 5.328 0.56 66.67 ? HN62 ATP 401 A 1 HETATM 81 H H2 ATP . A . B 2 19.912 83.689 5.624 0.44 66.69 ? H2 ATP 401 A 1 HETATM 82 H H2 ATP . B . B 2 19.946 83.65 5.672 0.56 66.67 ? H2 ATP 401 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 82 #