data_7Q7E # _model_server_result.job_id eui_bHDihHzqXJT2WIhyFQ _model_server_result.datetime_utc '2024-10-10 03:27:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q7e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7Q7E # _exptl.entry_id 7Q7E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Q7E _cell.length_a 84.24 _cell.length_b 84.24 _cell.length_c 117.26 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q7E _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall 'P 4w 2c' _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 161 A ASN 163 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc2 A OD2 ASP 177 A ASP 179 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc3 B O1B ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc4 B O1B ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc5 B O1A ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc6 B O1A ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc7 C MG MG . A MG 402 1_555 D O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc8 C MG MG . A MG 402 1_555 D O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7Q7E _atom_sites.fract_transf_matrix[1][1] 0.011871 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011871 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008528 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 401 1 ATP ATP . C 3 MG A 1 402 1 MG MG . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 10 HOH HOH . D 4 HOH A 4 504 12 HOH HOH . D 4 HOH A 5 505 8 HOH HOH . D 4 HOH A 6 506 13 HOH HOH . D 4 HOH A 7 507 6 HOH HOH . D 4 HOH A 8 508 11 HOH HOH . D 4 HOH A 9 509 4 HOH HOH . D 4 HOH A 10 510 3 HOH HOH . D 4 HOH A 11 511 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . B . B 2 27.205 91.101 -4.538 0.67 69.04 ? PG ATP 401 A 1 HETATM 2 O O1G ATP . B . B 2 28.267 90.839 -5.622 0.67 65.28 ? O1G ATP 401 A 1 HETATM 3 O O2G ATP . B . B 2 26.782 92.555 -4.557 0.67 62.49 ? O2G ATP 401 A 1 HETATM 4 O O3G ATP . B . B 2 27.76 90.735 -3.177 0.67 60.56 ? O3G ATP 401 A 1 HETATM 5 P PB ATP . A . B 2 24.338 90.089 -3.935 0.33 61.47 ? PB ATP 401 A 1 HETATM 6 P PB ATP . B . B 2 24.484 90.001 -3.901 0.67 61.71 ? PB ATP 401 A 1 HETATM 7 O O1B ATP . A . B 2 23.618 91.4 -3.653 0.33 61.58 ? O1B ATP 401 A 1 HETATM 8 O O1B ATP . B . B 2 23.829 91.349 -3.642 0.67 62.58 ? O1B ATP 401 A 1 HETATM 9 O O2B ATP . A . B 2 23.381 89.116 -4.553 0.33 60.42 ? O2B ATP 401 A 1 HETATM 10 O O2B ATP . B . B 2 23.518 89.1 -4.611 0.67 59.93 ? O2B ATP 401 A 1 HETATM 11 O O3B ATP . A . B 2 25.581 90.362 -4.963 0.33 62.9 ? O3B ATP 401 A 1 HETATM 12 O O3B ATP . B . B 2 25.827 90.232 -4.807 0.67 63.58 ? O3B ATP 401 A 1 HETATM 13 P PA ATP . A . B 2 24.191 89.147 -1.045 0.33 60.11 ? PA ATP 401 A 1 HETATM 14 P PA ATP . B . B 2 24.166 89.162 -0.988 0.67 60.2 ? PA ATP 401 A 1 HETATM 15 O O1A ATP . A . B 2 23.542 90.415 -0.523 0.33 60.97 ? O1A ATP 401 A 1 HETATM 16 O O1A ATP . B . B 2 23.502 90.475 -0.612 0.67 61.17 ? O1A ATP 401 A 1 HETATM 17 O O2A ATP . A . B 2 25.248 88.675 -0.042 0.33 59.88 ? O2A ATP 401 A 1 HETATM 18 O O2A ATP . B . B 2 25.192 88.792 0.087 0.67 59.34 ? O2A ATP 401 A 1 HETATM 19 O O3A ATP . A . B 2 24.919 89.469 -2.506 0.33 60.06 ? O3A ATP 401 A 1 HETATM 20 O O3A ATP . B . B 2 24.937 89.325 -2.451 0.67 59.34 ? O3A ATP 401 A 1 HETATM 21 O O5' ATP . A . B 2 23.09 88.015 -1.236 0.33 59.8 ? O5' ATP 401 A 1 HETATM 22 O O5' ATP . B . B 2 23.076 88.013 -1.11 0.67 58.84 ? O5' ATP 401 A 1 HETATM 23 C C5' ATP . A . B 2 21.827 88.363 -1.873 0.33 61.44 ? C5' ATP 401 A 1 HETATM 24 C C5' ATP . B . B 2 21.849 88.29 -1.843 0.67 62.26 ? C5' ATP 401 A 1 HETATM 25 C C4' ATP . A . B 2 20.687 88.063 -0.925 0.33 61.36 ? C4' ATP 401 A 1 HETATM 26 C C4' ATP . B . B 2 20.672 88.025 -0.931 0.67 61.83 ? C4' ATP 401 A 1 HETATM 27 O O4' ATP . A . B 2 20.954 86.818 -0.236 0.33 60.24 ? O4' ATP 401 A 1 HETATM 28 O O4' ATP . B . B 2 20.876 86.761 -0.253 0.67 59.84 ? O4' ATP 401 A 1 HETATM 29 C C3' ATP . A . B 2 20.597 89.141 0.146 0.33 61.27 ? C3' ATP 401 A 1 HETATM 30 C C3' ATP . B . B 2 20.592 89.091 0.152 0.67 61.37 ? C3' ATP 401 A 1 HETATM 31 O O3' ATP . A . B 2 19.565 90.075 -0.182 0.33 62.46 ? O3' ATP 401 A 1 HETATM 32 O O3' ATP . B . B 2 19.613 90.073 -0.197 0.67 64.05 ? O3' ATP 401 A 1 HETATM 33 C C2' ATP . A . B 2 20.246 88.402 1.431 0.33 60.32 ? C2' ATP 401 A 1 HETATM 34 C C2' ATP . B . B 2 20.162 88.346 1.407 0.67 60.09 ? C2' ATP 401 A 1 HETATM 35 O O2' ATP . A . B 2 18.852 88.559 1.737 0.33 60.81 ? O2' ATP 401 A 1 HETATM 36 O O2' ATP . B . B 2 18.75 88.492 1.623 0.67 60.76 ? O2' ATP 401 A 1 HETATM 37 C C1' ATP . A . B 2 20.529 86.938 1.102 0.33 59.19 ? C1' ATP 401 A 1 HETATM 38 C C1' ATP . B . B 2 20.46 86.885 1.088 0.67 58 ? C1' ATP 401 A 1 HETATM 39 N N9 ATP . A . B 2 21.571 86.478 1.941 0.33 59.01 ? N9 ATP 401 A 1 HETATM 40 N N9 ATP . B . B 2 21.514 86.435 1.917 0.67 57.97 ? N9 ATP 401 A 1 HETATM 41 C C8 ATP . A . B 2 22.874 86.705 1.739 0.33 59.86 ? C8 ATP 401 A 1 HETATM 42 C C8 ATP . B . B 2 22.813 86.662 1.695 0.67 59.81 ? C8 ATP 401 A 1 HETATM 43 N N7 ATP . A . B 2 23.586 86.129 2.726 0.33 59.34 ? N7 ATP 401 A 1 HETATM 44 N N7 ATP . B . B 2 23.541 86.096 2.676 0.67 58.39 ? N7 ATP 401 A 1 HETATM 45 C C5 ATP . A . B 2 22.732 85.531 3.565 0.33 59.83 ? C5 ATP 401 A 1 HETATM 46 C C5 ATP . B . B 2 22.7 85.503 3.532 0.67 59.74 ? C5 ATP 401 A 1 HETATM 47 C C6 ATP . A . B 2 22.904 84.803 4.728 0.33 59.86 ? C6 ATP 401 A 1 HETATM 48 C C6 ATP . B . B 2 22.887 84.784 4.699 0.67 59.73 ? C6 ATP 401 A 1 HETATM 49 N N6 ATP . A . B 2 24.125 84.574 5.23 0.33 59.49 ? N6 ATP 401 A 1 HETATM 50 N N6 ATP . B . B 2 24.113 84.559 5.189 0.67 58.56 ? N6 ATP 401 A 1 HETATM 51 N N1 ATP . A . B 2 21.845 84.322 5.357 0.33 59.42 ? N1 ATP 401 A 1 HETATM 52 N N1 ATP . B . B 2 21.838 84.308 5.346 0.67 58.69 ? N1 ATP 401 A 1 HETATM 53 C C2 ATP . A . B 2 20.616 84.563 4.836 0.33 58.88 ? C2 ATP 401 A 1 HETATM 54 C C2 ATP . B . B 2 20.602 84.542 4.839 0.67 57.93 ? C2 ATP 401 A 1 HETATM 55 N N3 ATP . A . B 2 20.387 85.249 3.732 0.33 58.32 ? N3 ATP 401 A 1 HETATM 56 N N3 ATP . B . B 2 20.357 85.218 3.733 0.67 56.61 ? N3 ATP 401 A 1 HETATM 57 C C4 ATP . A . B 2 21.446 85.752 3.068 0.33 58.9 ? C4 ATP 401 A 1 HETATM 58 C C4 ATP . B . B 2 21.406 85.717 3.051 0.67 57.9 ? C4 ATP 401 A 1 HETATM 59 H "H5'1" ATP . A . B 2 21.72 87.842 -2.685 0.33 73.73 ? "H5'1" ATP 401 A 1 HETATM 60 H "H5'1" ATP . B . B 2 21.797 87.713 -2.621 0.67 74.71 ? "H5'1" ATP 401 A 1 HETATM 61 H "H5'2" ATP . A . B 2 21.826 89.308 -2.093 0.33 73.73 ? "H5'2" ATP 401 A 1 HETATM 62 H "H5'2" ATP . B . B 2 21.841 89.217 -2.127 0.67 74.71 ? "H5'2" ATP 401 A 1 HETATM 63 H H4' ATP . A . B 2 19.841 88.007 -1.396 0.33 73.64 ? H4' ATP 401 A 1 HETATM 64 H H4' ATP . B . B 2 19.837 88.012 -1.425 0.67 74.19 ? H4' ATP 401 A 1 HETATM 65 H H3' ATP . A . B 2 21.45 89.595 0.239 0.33 73.52 ? H3' ATP 401 A 1 HETATM 66 H H3' ATP . B . B 2 21.459 89.507 0.283 0.67 73.65 ? H3' ATP 401 A 1 HETATM 67 H HO3' ATP . A . B 2 19.485 90.642 0.446 0.33 74.95 ? HO3' ATP 401 A 1 HETATM 68 H HO3' ATP . B . B 2 19.545 90.642 0.431 0.67 76.85 ? HO3' ATP 401 A 1 HETATM 69 H H2' ATP . A . B 2 20.831 88.705 2.143 0.33 72.38 ? H2' ATP 401 A 1 HETATM 70 H H2' ATP . B . B 2 20.7 88.651 2.154 0.67 72.11 ? H2' ATP 401 A 1 HETATM 71 H HO2' ATP . A . B 2 18.722 88.397 2.562 0.33 72.97 ? HO2' ATP 401 A 1 HETATM 72 H HO2' ATP . B . B 2 18.586 88.463 2.457 0.67 72.92 ? HO2' ATP 401 A 1 HETATM 73 H H1' ATP . A . B 2 19.697 86.448 1.2 0.33 71.02 ? H1' ATP 401 A 1 HETATM 74 H H1' ATP . B . B 2 19.635 86.389 1.201 0.67 69.61 ? H1' ATP 401 A 1 HETATM 75 H H8 ATP . A . B 2 23.232 87.186 1.028 0.33 71.83 ? H8 ATP 401 A 1 HETATM 76 H H8 ATP . B . B 2 23.16 87.137 0.975 0.67 71.78 ? H8 ATP 401 A 1 HETATM 77 H HN61 ATP . A . B 2 24.214 84.115 5.951 0.33 71.38 ? HN61 ATP 401 A 1 HETATM 78 H HN61 ATP . B . B 2 24.21 84.103 5.912 0.67 70.27 ? HN61 ATP 401 A 1 HETATM 79 H HN62 ATP . A . B 2 24.819 84.887 4.83 0.33 71.38 ? HN62 ATP 401 A 1 HETATM 80 H HN62 ATP . B . B 2 24.803 84.871 4.781 0.67 70.27 ? HN62 ATP 401 A 1 HETATM 81 H H2 ATP . A . B 2 19.881 84.219 5.29 0.33 70.66 ? H2 ATP 401 A 1 HETATM 82 H H2 ATP . B . B 2 19.875 84.201 5.305 0.67 69.51 ? H2 ATP 401 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 82 #