data_7Q7M # _model_server_result.job_id doH4gG5c2-lWxJnJuT6FqQ _model_server_result.datetime_utc '2024-11-15 07:58:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q7m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":413}' # _entry.id 7Q7M # _exptl.entry_id 7Q7M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Q7M _cell.length_a 102.21 _cell.length_b 102.21 _cell.length_c 237.71 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q7M _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall 'P 4n 2n' _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 12 _struct_asym.id Z _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B NE2 HIS 190 L HIS 190 1_555 R FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc2 B NE2 HIS 230 L HIS 230 1_555 R FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc3 C NE2 HIS 219 M HIS 219 1_555 R FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc4 C OE1 GLU 234 M GLU 234 1_555 R FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc5 C OE2 GLU 234 M GLU 234 1_555 R FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc6 C NE2 HIS 266 M HIS 266 1_555 R FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 364 n n C1 O2 CIT sing 365 n n C1 C2 CIT sing 366 n n O2 HO2 CIT sing 367 n n C2 C3 CIT sing 368 n n C2 H21 CIT sing 369 n n C2 H22 CIT sing 370 n n C3 O7 CIT sing 371 n n C3 C4 CIT sing 372 n n C3 C6 CIT sing 373 n n O7 HO7 CIT sing 374 n n C4 C5 CIT sing 375 n n C4 H41 CIT sing 376 n n C4 H42 CIT sing 377 n n C5 O3 CIT doub 378 n n C5 O4 CIT sing 379 n n O4 HO4 CIT sing 380 n n C6 O5 CIT doub 381 n n C6 O6 CIT sing 382 n n O6 HO6 CIT sing 383 n n # _atom_sites.entry_id 7Q7M _atom_sites.fract_transf_matrix[1][1] 0.009784 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009784 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004207 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LDA H 1 301 702 LDA LDA . E 4 LDA H 1 302 704 LDA LDA . F 4 LDA H 1 303 1001 LDA LDA . G 5 BPH L 1 301 301 BPH BPH . H 6 BCL L 1 302 302 BCL BCL . I 6 BCL L 1 303 303 BCL BCL . J 7 OLC L 1 304 1 OLC OLC . K 4 LDA L 1 305 1004 LDA LDA . L 4 LDA L 1 306 1005 LDA LDA . M 4 LDA L 1 307 1006 LDA LDA . N 8 UQ7 M 1 401 401 UQ7 U10 . O 6 BCL M 1 402 402 BCL BCL . P 6 BCL M 1 403 403 BCL BCL . Q 5 BPH M 1 404 404 BPH BPH . R 9 FE M 1 405 500 FE FE . S 4 LDA M 1 406 701 LDA LDA . T 4 LDA M 1 407 703 LDA LDA . U 10 PO4 M 1 408 800 PO4 PO4 . V 7 OLC M 1 409 2 OLC OLC . W 11 SPN M 1 410 3 SPN SPN . X 4 LDA M 1 411 1002 LDA LDA . Y 10 PO4 M 1 412 1 PO4 PO4 . Z 12 CIT M 1 413 1 CIT CIT . AA 13 CL M 1 414 1 CL CL . BA 14 HOH H 1 401 249 HOH HOH . BA 14 HOH H 2 402 203 HOH HOH . BA 14 HOH H 3 403 177 HOH HOH . BA 14 HOH H 4 404 100 HOH HOH . BA 14 HOH H 5 405 51 HOH HOH . BA 14 HOH H 6 406 61 HOH HOH . BA 14 HOH H 7 407 157 HOH HOH . BA 14 HOH H 8 408 156 HOH HOH . BA 14 HOH H 9 409 254 HOH HOH . BA 14 HOH H 10 410 161 HOH HOH . BA 14 HOH H 11 411 97 HOH HOH . BA 14 HOH H 12 412 43 HOH HOH . BA 14 HOH H 13 413 121 HOH HOH . BA 14 HOH H 14 414 32 HOH HOH . BA 14 HOH H 15 415 29 HOH HOH . BA 14 HOH H 16 416 182 HOH HOH . BA 14 HOH H 17 417 38 HOH HOH . BA 14 HOH H 18 418 242 HOH HOH . BA 14 HOH H 19 419 54 HOH HOH . BA 14 HOH H 20 420 99 HOH HOH . BA 14 HOH H 21 421 15 HOH HOH . BA 14 HOH H 22 422 117 HOH HOH . BA 14 HOH H 23 423 116 HOH HOH . BA 14 HOH H 24 424 146 HOH HOH . BA 14 HOH H 25 425 196 HOH HOH . BA 14 HOH H 26 426 19 HOH HOH . BA 14 HOH H 27 427 154 HOH HOH . BA 14 HOH H 28 428 2 HOH HOH . BA 14 HOH H 29 429 35 HOH HOH . BA 14 HOH H 30 430 135 HOH HOH . BA 14 HOH H 31 431 84 HOH HOH . BA 14 HOH H 32 432 33 HOH HOH . BA 14 HOH H 33 433 24 HOH HOH . BA 14 HOH H 34 434 26 HOH HOH . BA 14 HOH H 35 435 264 HOH HOH . BA 14 HOH H 36 436 237 HOH HOH . BA 14 HOH H 37 437 47 HOH HOH . BA 14 HOH H 38 438 229 HOH HOH . BA 14 HOH H 39 439 158 HOH HOH . BA 14 HOH H 40 440 127 HOH HOH . BA 14 HOH H 41 441 74 HOH HOH . BA 14 HOH H 42 442 20 HOH HOH . BA 14 HOH H 43 443 265 HOH HOH . BA 14 HOH H 44 444 8 HOH HOH . BA 14 HOH H 45 445 148 HOH HOH . BA 14 HOH H 46 446 6 HOH HOH . BA 14 HOH H 47 447 27 HOH HOH . BA 14 HOH H 48 448 48 HOH HOH . BA 14 HOH H 49 449 22 HOH HOH . BA 14 HOH H 50 450 270 HOH HOH . BA 14 HOH H 51 451 138 HOH HOH . BA 14 HOH H 52 452 85 HOH HOH . BA 14 HOH H 53 453 192 HOH HOH . BA 14 HOH H 54 454 145 HOH HOH . BA 14 HOH H 55 455 109 HOH HOH . BA 14 HOH H 56 456 23 HOH HOH . BA 14 HOH H 57 457 41 HOH HOH . BA 14 HOH H 58 458 37 HOH HOH . BA 14 HOH H 59 459 187 HOH HOH . BA 14 HOH H 60 460 64 HOH HOH . BA 14 HOH H 61 461 175 HOH HOH . BA 14 HOH H 62 462 52 HOH HOH . BA 14 HOH H 63 463 267 HOH HOH . BA 14 HOH H 64 464 236 HOH HOH . BA 14 HOH H 65 465 233 HOH HOH . BA 14 HOH H 66 466 125 HOH HOH . BA 14 HOH H 67 467 77 HOH HOH . BA 14 HOH H 68 468 232 HOH HOH . BA 14 HOH H 69 469 25 HOH HOH . BA 14 HOH H 70 470 220 HOH HOH . BA 14 HOH H 71 471 165 HOH HOH . BA 14 HOH H 72 472 147 HOH HOH . BA 14 HOH H 73 473 269 HOH HOH . BA 14 HOH H 74 474 128 HOH HOH . BA 14 HOH H 75 475 172 HOH HOH . BA 14 HOH H 76 476 73 HOH HOH . BA 14 HOH H 77 477 246 HOH HOH . BA 14 HOH H 78 478 93 HOH HOH . BA 14 HOH H 79 479 263 HOH HOH . BA 14 HOH H 80 480 87 HOH HOH . BA 14 HOH H 81 481 179 HOH HOH . BA 14 HOH H 82 482 235 HOH HOH . BA 14 HOH H 83 483 231 HOH HOH . BA 14 HOH H 84 484 224 HOH HOH . BA 14 HOH H 85 485 252 HOH HOH . BA 14 HOH H 86 486 268 HOH HOH . BA 14 HOH H 87 487 253 HOH HOH . CA 14 HOH L 1 401 132 HOH HOH . CA 14 HOH L 2 402 45 HOH HOH . CA 14 HOH L 3 403 166 HOH HOH . CA 14 HOH L 4 404 67 HOH HOH . CA 14 HOH L 5 405 46 HOH HOH . CA 14 HOH L 6 406 44 HOH HOH . CA 14 HOH L 7 407 40 HOH HOH . CA 14 HOH L 8 408 273 HOH HOH . CA 14 HOH L 9 409 59 HOH HOH . CA 14 HOH L 10 410 230 HOH HOH . CA 14 HOH L 11 411 16 HOH HOH . CA 14 HOH L 12 412 90 HOH HOH . CA 14 HOH L 13 413 31 HOH HOH . CA 14 HOH L 14 414 108 HOH HOH . CA 14 HOH L 15 415 60 HOH HOH . CA 14 HOH L 16 416 28 HOH HOH . CA 14 HOH L 17 417 42 HOH HOH . CA 14 HOH L 18 418 238 HOH HOH . CA 14 HOH L 19 419 11 HOH HOH . CA 14 HOH L 20 420 62 HOH HOH . CA 14 HOH L 21 421 9 HOH HOH . CA 14 HOH L 22 422 105 HOH HOH . CA 14 HOH L 23 423 65 HOH HOH . CA 14 HOH L 24 424 7 HOH HOH . CA 14 HOH L 25 425 68 HOH HOH . CA 14 HOH L 26 426 69 HOH HOH . CA 14 HOH L 27 427 130 HOH HOH . CA 14 HOH L 28 428 102 HOH HOH . CA 14 HOH L 29 429 101 HOH HOH . CA 14 HOH L 30 430 80 HOH HOH . CA 14 HOH L 31 431 225 HOH HOH . CA 14 HOH L 32 432 50 HOH HOH . CA 14 HOH L 33 433 199 HOH HOH . CA 14 HOH L 34 434 58 HOH HOH . CA 14 HOH L 35 435 104 HOH HOH . CA 14 HOH L 36 436 88 HOH HOH . CA 14 HOH L 37 437 275 HOH HOH . CA 14 HOH L 38 438 89 HOH HOH . CA 14 HOH L 39 439 119 HOH HOH . CA 14 HOH L 40 440 144 HOH HOH . CA 14 HOH L 41 441 136 HOH HOH . CA 14 HOH L 42 442 261 HOH HOH . CA 14 HOH L 43 443 164 HOH HOH . CA 14 HOH L 44 444 284 HOH HOH . CA 14 HOH L 45 445 266 HOH HOH . CA 14 HOH L 46 446 245 HOH HOH . CA 14 HOH L 47 447 272 HOH HOH . CA 14 HOH L 48 448 243 HOH HOH . CA 14 HOH L 49 449 258 HOH HOH . CA 14 HOH L 50 450 256 HOH HOH . DA 14 HOH M 1 501 151 HOH HOH . DA 14 HOH M 2 502 155 HOH HOH . DA 14 HOH M 3 503 34 HOH HOH . DA 14 HOH M 4 504 276 HOH HOH . DA 14 HOH M 5 505 150 HOH HOH . DA 14 HOH M 6 506 12 HOH HOH . DA 14 HOH M 7 507 195 HOH HOH . DA 14 HOH M 8 508 143 HOH HOH . DA 14 HOH M 9 509 30 HOH HOH . DA 14 HOH M 10 510 124 HOH HOH . DA 14 HOH M 11 511 39 HOH HOH . DA 14 HOH M 12 512 205 HOH HOH . DA 14 HOH M 13 513 56 HOH HOH . DA 14 HOH M 14 514 142 HOH HOH . DA 14 HOH M 15 515 81 HOH HOH . DA 14 HOH M 16 516 49 HOH HOH . DA 14 HOH M 17 517 95 HOH HOH . DA 14 HOH M 18 518 173 HOH HOH . DA 14 HOH M 19 519 72 HOH HOH . DA 14 HOH M 20 520 5 HOH HOH . DA 14 HOH M 21 521 227 HOH HOH . DA 14 HOH M 22 522 17 HOH HOH . DA 14 HOH M 23 523 57 HOH HOH . DA 14 HOH M 24 524 4 HOH HOH . DA 14 HOH M 25 525 244 HOH HOH . DA 14 HOH M 26 526 137 HOH HOH . DA 14 HOH M 27 527 279 HOH HOH . DA 14 HOH M 28 528 78 HOH HOH . DA 14 HOH M 29 529 14 HOH HOH . DA 14 HOH M 30 530 153 HOH HOH . DA 14 HOH M 31 531 247 HOH HOH . DA 14 HOH M 32 532 283 HOH HOH . DA 14 HOH M 33 533 107 HOH HOH . DA 14 HOH M 34 534 160 HOH HOH . DA 14 HOH M 35 535 76 HOH HOH . DA 14 HOH M 36 536 13 HOH HOH . DA 14 HOH M 37 537 281 HOH HOH . DA 14 HOH M 38 538 123 HOH HOH . DA 14 HOH M 39 539 55 HOH HOH . DA 14 HOH M 40 540 83 HOH HOH . DA 14 HOH M 41 541 75 HOH HOH . DA 14 HOH M 42 542 53 HOH HOH . DA 14 HOH M 43 543 70 HOH HOH . DA 14 HOH M 44 544 152 HOH HOH . DA 14 HOH M 45 545 180 HOH HOH . DA 14 HOH M 46 546 3 HOH HOH . DA 14 HOH M 47 547 91 HOH HOH . DA 14 HOH M 48 548 21 HOH HOH . DA 14 HOH M 49 549 163 HOH HOH . DA 14 HOH M 50 550 282 HOH HOH . DA 14 HOH M 51 551 86 HOH HOH . DA 14 HOH M 52 552 66 HOH HOH . DA 14 HOH M 53 553 141 HOH HOH . DA 14 HOH M 54 554 248 HOH HOH . DA 14 HOH M 55 555 280 HOH HOH . DA 14 HOH M 56 556 271 HOH HOH . DA 14 HOH M 57 557 255 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . Z 12 21.357 37.296 -40.736 1 147.82 ? C1 CIT 413 M 1 HETATM 2 O O1 CIT . . . Z 12 22.426 37.676 -41.169 1 147.12 ? O1 CIT 413 M 1 HETATM 3 O O2 CIT . . . Z 12 21.235 36.698 -39.586 1 147.1 ? O2 CIT 413 M 1 HETATM 4 C C2 CIT . . . Z 12 20.059 37.475 -41.493 1 149.95 ? C2 CIT 413 M 1 HETATM 5 C C3 CIT . . . Z 12 18.796 37.874 -40.709 1 152.49 ? C3 CIT 413 M 1 HETATM 6 O O7 CIT . . . Z 12 17.762 38.128 -41.662 1 152.32 ? O7 CIT 413 M 1 HETATM 7 C C4 CIT . . . Z 12 18.339 36.723 -39.801 1 153.08 ? C4 CIT 413 M 1 HETATM 8 C C5 CIT . . . Z 12 17.505 37.13 -38.622 1 153.52 ? C5 CIT 413 M 1 HETATM 9 O O3 CIT . . . Z 12 17.776 36.832 -37.477 1 153.72 ? O3 CIT 413 M 1 HETATM 10 O O4 CIT . . . Z 12 16.458 37.83 -38.956 1 153.54 ? O4 CIT 413 M 1 HETATM 11 C C6 CIT . . . Z 12 19.011 39.147 -39.891 1 154.71 ? C6 CIT 413 M 1 HETATM 12 O O5 CIT . . . Z 12 18.3 40.132 -40.018 1 155.49 ? O5 CIT 413 M 1 HETATM 13 O O6 CIT . . . Z 12 20.007 39.073 -39.044 1 155.55 ? O6 CIT 413 M 1 HETATM 14 H HO2 CIT . . . Z 12 22.11 36.601 -39.127 1 176.58 ? HO2 CIT 413 M 1 HETATM 15 H H21 CIT . . . Z 12 20.215 38.216 -42.276 1 179.99 ? H21 CIT 413 M 1 HETATM 16 H H22 CIT . . . Z 12 19.843 36.553 -42.03 1 179.99 ? H22 CIT 413 M 1 HETATM 17 H HO7 CIT . . . Z 12 16.922 38.268 -41.151 1 182.84 ? HO7 CIT 413 M 1 HETATM 18 H H41 CIT . . . Z 12 19.217 36.181 -39.454 1 183.74 ? H41 CIT 413 M 1 HETATM 19 H H42 CIT . . . Z 12 17.789 36 -40.401 1 183.74 ? H42 CIT 413 M 1 HETATM 20 H HO4 CIT . . . Z 12 15.92 38.091 -38.162 1 184.3 ? HO4 CIT 413 M 1 HETATM 21 H HO6 CIT . . . Z 12 20.109 39.92 -38.537 1 186.72 ? HO6 CIT 413 M 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 21 #