data_7Q85 # _model_server_result.job_id sEEoCCsHYbj9poc3kwDxKA _model_server_result.datetime_utc '2024-10-19 03:44:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q85 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7Q85 # _exptl.entry_id 7Q85 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 658.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-[(1R,6R,8R,13E,15R,17R,18R)-17-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,16-pentaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadec-13-en-8-yl]purin-6-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Q85 _cell.length_a 111.034 _cell.length_b 111.034 _cell.length_c 35.091 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q85 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -17.5455 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H22 F2 N10 O9 P2' _chem_comp.formula_weight 658.405 _chem_comp.id 98F _chem_comp.mon_nstd_flag . _chem_comp.name 9-[(1R,6R,8R,13E,15R,17R,18R)-17-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,16-pentaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadec-13-en-8-yl]purin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 N4 98F sing 1 n y C10 N5 98F doub 2 n y C11 C12 98F doub 3 n y C11 N5 98F sing 4 n y C11 N6 98F sing 5 n y C12 C13 98F sing 6 n y C12 N7 98F sing 7 n y C13 N9 98F sing 8 n n C13 N4 98F doub 9 n y C14 N7 98F doub 10 n y C14 N6 98F sing 11 n y C16 C15 98F sing 12 n n C16 C17 98F sing 13 n n C16 F1 98F sing 14 n n C15 C18 98F sing 15 n n C15 O7 98F sing 16 n n C17 N6 98F sing 17 n n C17 O5 98F sing 18 n n C20 C19 98F doub 19 e n C20 P1 98F sing 20 n n C7 N2 98F sing 21 n n C7 C6 98F sing 22 n n C7 O1 98F sing 23 n n C4 N3 98F doub 24 n y C4 N2 98F sing 25 n y N3 C2 98F sing 26 n y C2 C1 98F doub 27 n y C2 C3 98F sing 28 n y N2 C1 98F sing 29 n y N1 C 98F doub 30 n y N1 C1 98F sing 31 n y C6 F2 98F sing 32 n n C5 C8 98F sing 33 n n C5 O10 98F sing 34 n n C8 C9 98F sing 35 n n C8 O1 98F sing 36 n n N C 98F sing 37 n y N C3 98F doub 38 n y O P 98F doub 39 n n C18 C19 98F sing 40 n n C18 O5 98F sing 41 n n C3 N10 98F sing 42 n n C9 O2 98F sing 43 n n O10 P1 98F sing 44 n n O2 P 98F sing 45 n n O22 P1 98F doub 46 n n O3 P 98F sing 47 n n O4 P1 98F sing 48 n n O7 P 98F sing 49 n n C10 H1 98F sing 50 n n C14 H2 98F sing 51 n n C16 H3 98F sing 52 n n C15 H4 98F sing 53 n n C17 H5 98F sing 54 n n C20 H6 98F sing 55 n n C7 H7 98F sing 56 n n N9 H8 98F sing 57 n n N9 H9 98F sing 58 n n C4 H10 98F sing 59 n n C6 H11 98F sing 60 n n C5 H13 98F sing 61 n n C8 H15 98F sing 62 n n C H16 98F sing 63 n n C18 H17 98F sing 64 n n C19 H18 98F sing 65 n n C9 H19 98F sing 66 n n C9 H20 98F sing 67 n n O3 H21 98F sing 68 n n O4 H22 98F sing 69 n n N10 H23 98F sing 70 n n N10 H24 98F sing 71 n n C5 C6 98F sing 72 n n # _atom_sites.entry_id 7Q85 _atom_sites.fract_transf_matrix[1][1] 0.009006 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009006 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028497 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 98F A 1 401 1 98F MD1 . C 3 HOH A 1 501 5 HOH HOH . C 3 HOH A 2 502 21 HOH HOH . C 3 HOH A 3 503 4 HOH HOH . C 3 HOH A 4 504 24 HOH HOH . C 3 HOH A 5 505 9 HOH HOH . C 3 HOH A 6 506 11 HOH HOH . C 3 HOH A 7 507 20 HOH HOH . C 3 HOH A 8 508 15 HOH HOH . C 3 HOH A 9 509 10 HOH HOH . C 3 HOH A 10 510 2 HOH HOH . C 3 HOH A 11 511 1 HOH HOH . C 3 HOH A 12 512 6 HOH HOH . C 3 HOH A 13 513 3 HOH HOH . C 3 HOH A 14 514 18 HOH HOH . C 3 HOH A 15 515 17 HOH HOH . C 3 HOH A 16 516 26 HOH HOH . C 3 HOH A 17 517 12 HOH HOH . C 3 HOH A 18 518 22 HOH HOH . C 3 HOH A 19 519 25 HOH HOH . C 3 HOH A 20 520 23 HOH HOH . C 3 HOH A 21 521 8 HOH HOH . C 3 HOH A 22 522 13 HOH HOH . C 3 HOH A 23 523 7 HOH HOH . C 3 HOH A 24 524 19 HOH HOH . C 3 HOH A 25 525 27 HOH HOH . C 3 HOH A 26 526 14 HOH HOH . C 3 HOH A 27 527 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 98F . . . B 2 -14.029 21.046 -8.708 0.5 44.36 ? C10 98F 401 A 1 HETATM 2 C C11 98F . . . B 2 -16.104 21.209 -7.684 0.5 40.38 ? C11 98F 401 A 1 HETATM 3 C C12 98F . . . B 2 -16.085 19.824 -7.398 0.5 41.57 ? C12 98F 401 A 1 HETATM 4 C C13 98F . . . B 2 -14.941 19.076 -7.825 0.5 41.2 ? C13 98F 401 A 1 HETATM 5 C C14 98F . . . B 2 -17.947 20.674 -6.625 0.5 40.83 ? C14 98F 401 A 1 HETATM 6 C C16 98F . . . B 2 -18.092 23.474 -8.461 0.5 43.23 ? C16 98F 401 A 1 HETATM 7 C C15 98F . . . B 2 -19.596 22.872 -8.564 0.5 41.52 ? C15 98F 401 A 1 HETATM 8 C C17 98F . . . B 2 -17.725 23.155 -7.268 0.5 43.13 ? C17 98F 401 A 1 HETATM 9 C C20 98F . . . B 2 -22.649 22.394 -6.878 0.5 41.71 ? C20 98F 401 A 1 HETATM 10 C C7 98F . . . B 2 -22.892 18.013 -10.145 0.5 43.36 ? C7 98F 401 A 1 HETATM 11 N N9 98F . . . B 2 -14.844 17.599 -7.559 0.5 44.48 ? N9 98F 401 A 1 HETATM 12 C C4 98F . . . B 2 -20.436 17.983 -10.803 0.5 40.85 ? C4 98F 401 A 1 HETATM 13 N N3 98F . . . B 2 -19.391 17.128 -10.747 0.5 41.73 ? N3 98F 401 A 1 HETATM 14 C C2 98F . . . B 2 -19.819 15.975 -10.168 0.5 40.59 ? C2 98F 401 A 1 HETATM 15 N N2 98F . . . B 2 -21.517 17.409 -10.279 0.5 41.89 ? N2 98F 401 A 1 HETATM 16 N N1 98F . . . B 2 -21.869 15.146 -9.278 0.5 43.08 ? N1 98F 401 A 1 HETATM 17 C C6 98F . . . B 2 -23.118 18.32 -8.907 0.5 42.7 ? C6 98F 401 A 1 HETATM 18 C C5 98F . . . B 2 -23.221 20.01 -8.788 0.5 42.02 ? C5 98F 401 A 1 HETATM 19 N N7 98F . . . B 2 -17.245 19.529 -6.742 0.5 41.83 ? N7 98F 401 A 1 HETATM 20 C C8 98F . . . B 2 -23.514 20.433 -9.913 0.5 41.42 ? C8 98F 401 A 1 HETATM 21 N N 98F . . . B 2 -19.998 13.787 -9.243 0.5 44.63 ? N 98F 401 A 1 HETATM 22 C C 98F . . . B 2 -21.289 13.996 -8.976 0.5 44.1 ? C 98F 401 A 1 HETATM 23 O O 98F . . . B 2 -19.188 21.663 -11.427 0.5 38.01 ? O 98F 401 A 1 HETATM 24 C C1 98F . . . B 2 -21.175 16.151 -9.868 0.5 40.55 ? C1 98F 401 A 1 HETATM 25 C C18 98F . . . B 2 -20.168 23.244 -7.466 0.5 41.43 ? C18 98F 401 A 1 HETATM 26 C C19 98F . . . B 2 -21.109 22.099 -7.14 0.5 40.35 ? C19 98F 401 A 1 HETATM 27 C C3 98F . . . B 2 -19.225 14.731 -9.831 0.5 41.41 ? C3 98F 401 A 1 HETATM 28 C C9 98F . . . B 2 -22.762 21.744 -10.233 0.5 40.86 ? C9 98F 401 A 1 HETATM 29 F F1 98F . . . B 2 -18.17 24.86 -8.582 0.5 39.37 ? F1 98F 401 A 1 HETATM 30 F F2 98F . . . B 2 -24.298 17.791 -8.496 0.5 42.38 ? F2 98F 401 A 1 HETATM 31 N N4 98F . . . B 2 -13.95 19.724 -8.47 0.5 44.31 ? N4 98F 401 A 1 HETATM 32 N N5 98F . . . B 2 -15.06 21.778 -8.337 0.5 43.31 ? N5 98F 401 A 1 HETATM 33 N N6 98F . . . B 2 -17.267 21.7 -7.194 0.5 42.03 ? N6 98F 401 A 1 HETATM 34 O O1 98F . . . B 2 -23.006 19.303 -10.956 0.5 40.44 ? O1 98F 401 A 1 HETATM 35 O O10 98F . . . B 2 -24.22 20.323 -7.798 0.5 47.55 ? O10 98F 401 A 1 HETATM 36 O O2 98F . . . B 2 -21.713 21.451 -11.109 0.5 39.91 ? O2 98F 401 A 1 HETATM 37 O O22 98F . . . B 2 -24.906 21.242 -5.533 0.5 39.45 ? O22 98F 401 A 1 HETATM 38 O O3 98F . . . B 2 -20.666 23.326 -12.306 0.5 41.45 ? O3 98F 401 A 1 HETATM 39 O O4 98F . . . B 2 -22.893 19.894 -5.885 0.5 37.62 ? O4 98F 401 A 1 HETATM 40 O O5 98F . . . B 2 -18.996 23.307 -6.424 0.5 40.13 ? O5 98F 401 A 1 HETATM 41 O O7 98F . . . B 2 -20.32 23.386 -9.768 0.5 44.79 ? O7 98F 401 A 1 HETATM 42 P P 98F . . . B 2 -20.442 22.367 -11.107 0.5 37.32 ? P 98F 401 A 1 HETATM 43 P P1 98F . . . B 2 -23.775 20.935 -6.531 0.5 45.42 ? P1 98F 401 A 1 HETATM 44 N N10 98F . . . B 2 -17.781 14.464 -10.118 0.5 44.35 ? N10 98F 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 44 #