data_7Q8B # _model_server_result.job_id XmUOvGp-zHG9QQgU7ilDUw _model_server_result.datetime_utc '2024-10-20 19:17:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q8b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":802}' # _entry.id 7Q8B # _exptl.entry_id 7Q8B _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Q8B _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q8B _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 J N N ? 3 M N N ? 3 P N N ? 3 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 214 A LYS 213 1_555 G O2' ADP . A ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? covale ? covale2 B NZ LYS 214 B LYS 213 1_555 J O2' ADP . B ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? covale ? covale3 C NZ LYS 214 C LYS 213 1_555 M O2' ADP . C ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? covale ? covale4 D NZ LYS 214 D LYS 213 1_555 P O2' ADP . D ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? covale ? covale5 E NZ LYS 214 E LYS 213 1_555 S O2' ADP . E ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? metalc ? metalc1 F MG MG . A MG 801 1_555 G O2B ADP . A ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc2 F MG MG . A MG 801 1_555 H O4 PO4 . A PO4 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc3 I MG MG . B MG 801 1_555 J O2B ADP . B ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc4 I MG MG . B MG 801 1_555 K O4 PO4 . B PO4 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc5 L MG MG . C MG 801 1_555 M O2B ADP . C ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc6 L MG MG . C MG 801 1_555 N O4 PO4 . C PO4 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc7 O MG MG . D MG 801 1_555 P O2B ADP . D ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc8 O MG MG . D MG 801 1_555 Q O4 PO4 . D PO4 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc9 R MG MG . E MG 801 1_555 S O2B ADP . E ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc10 R MG MG . E MG 801 1_555 T O4 PO4 . E PO4 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7Q8B _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 MG A 1 801 801 MG MG . G 3 ADP A 1 802 802 ADP ADP . H 4 PO4 A 1 803 803 PO4 PO4 . I 2 MG B 1 801 801 MG MG . J 3 ADP B 1 802 802 ADP ADP . K 4 PO4 B 1 803 803 PO4 PO4 . L 2 MG C 1 801 801 MG MG . M 3 ADP C 1 802 802 ADP ADP . N 4 PO4 C 1 803 803 PO4 PO4 . O 2 MG D 1 801 801 MG MG . P 3 ADP D 1 802 802 ADP ADP . Q 4 PO4 D 1 803 803 PO4 PO4 . R 2 MG E 1 801 801 MG MG . S 3 ADP E 1 802 802 ADP ADP . T 4 PO4 E 1 803 803 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . J 3 120.711 106.923 58.333 1 10.69 ? PB ADP 802 B 1 HETATM 2 O O1B ADP . . . J 3 120.128 105.923 57.369 1 10.69 ? O1B ADP 802 B 1 HETATM 3 O O2B ADP . . . J 3 120.914 106.399 59.732 1 10.69 ? O2B ADP 802 B 1 HETATM 4 O O3B ADP . . . J 3 120.081 108.288 58.257 1 10.69 ? O3B ADP 802 B 1 HETATM 5 P PA ADP . . . J 3 123.226 105.978 57.5 1 10.69 ? PA ADP 802 B 1 HETATM 6 O O1A ADP . . . J 3 122.627 105.107 56.429 1 10.69 ? O1A ADP 802 B 1 HETATM 7 O O2A ADP . . . J 3 123.681 105.394 58.811 1 10.69 ? O2A ADP 802 B 1 HETATM 8 O O3A ADP . . . J 3 122.2 107.18 57.794 1 10.69 ? O3A ADP 802 B 1 HETATM 9 O O5' ADP . . . J 3 124.439 106.801 56.849 1 10.69 ? O5' ADP 802 B 1 HETATM 10 C C5' ADP . . . J 3 124.51 106.997 55.44 1 10.69 ? C5' ADP 802 B 1 HETATM 11 C C4' ADP . . . J 3 125.493 108.127 55.172 1 10.69 ? C4' ADP 802 B 1 HETATM 12 O O4' ADP . . . J 3 126.775 107.73 55.646 1 10.69 ? O4' ADP 802 B 1 HETATM 13 C C3' ADP . . . J 3 125.625 108.45 53.696 1 10.69 ? C3' ADP 802 B 1 HETATM 14 O O3' ADP . . . J 3 125.138 109.769 53.447 1 10.69 ? O3' ADP 802 B 1 HETATM 15 C C2' ADP . . . J 3 127.105 108.389 53.383 1 10.69 ? C2' ADP 802 B 1 HETATM 16 O O2' ADP . . . J 3 127.582 109.681 52.991 1 10.69 ? O2' ADP 802 B 1 HETATM 17 C C1' ADP . . . J 3 127.785 107.953 54.668 1 10.69 ? C1' ADP 802 B 1 HETATM 18 N N9 ADP . . . J 3 128.503 106.677 54.451 1 10.69 ? N9 ADP 802 B 1 HETATM 19 C C8 ADP . . . J 3 127.925 105.493 54.188 1 10.69 ? C8 ADP 802 B 1 HETATM 20 N N7 ADP . . . J 3 128.855 104.517 54.045 1 10.69 ? N7 ADP 802 B 1 HETATM 21 C C5 ADP . . . J 3 130.061 105.085 54.219 1 10.69 ? C5 ADP 802 B 1 HETATM 22 C C6 ADP . . . J 3 131.467 104.626 54.201 1 10.69 ? C6 ADP 802 B 1 HETATM 23 N N6 ADP . . . J 3 131.775 103.33 53.961 1 10.69 ? N6 ADP 802 B 1 HETATM 24 N N1 ADP . . . J 3 132.429 105.542 54.431 1 10.69 ? N1 ADP 802 B 1 HETATM 25 C C2 ADP . . . J 3 132.133 106.832 54.669 1 10.69 ? C2 ADP 802 B 1 HETATM 26 N N3 ADP . . . J 3 130.883 107.319 54.701 1 10.69 ? N3 ADP 802 B 1 HETATM 27 C C4 ADP . . . J 3 129.824 106.509 54.485 1 10.69 ? C4 ADP 802 B 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 60 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #