data_7Q9B
#
_model_server_result.job_id            9ofkTiBUd7-6X4BXGndC2A 
_model_server_result.datetime_utc      '2024-12-28 05:44:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7q9b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":101}' 
#
_entry.id    7Q9B 
#
_exptl.entry_id    7Q9B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.333 
_cell.angle_gamma         90 
_cell.entry_id            7Q9B 
_cell.length_a            99.972 
_cell.length_b            53.645 
_cell.length_c            203.507 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Q9B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    decameric 
_pdbx_struct_assembly.oligomeric_count      10 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 101 AAA CYS 101 1_555 A SG CYS 164 AAA CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
disulf ? disulf2 A SG CYS 203 AAA CYS 203 1_555 A SG CYS 259 AAA CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
disulf ? disulf3 B SG CYS 26 BBB CYS 25 1_555 B SG CYS 81 BBB CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
disulf ? disulf4 D SG CYS 23 DDD CYS 23 1_555 D SG CYS 89 DDD CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf5 D SG CYS 129 DDD CYS 129 1_555 D SG CYS 179 DDD CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
disulf ? disulf6 D SG CYS 154 DDD CYS 154 1_555 E SG CYS 172 EEE CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
disulf ? disulf7 E SG CYS 23 EEE CYS 23 1_555 E SG CYS 91 EEE CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf8 E SG CYS 146 EEE CYS 146 1_555 E SG CYS 211 EEE CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf9 F SG CYS 101 FFF CYS 101 1_555 F SG CYS 164 FFF CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf10 F SG CYS 203 FFF CYS 203 1_555 F SG CYS 259 FFF CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf11 G SG CYS 26 GGG CYS 25 1_555 G SG CYS 81 GGG CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
disulf ? disulf12 I SG CYS 23 III CYS 23 1_555 I SG CYS 89 III CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
disulf ? disulf13 I SG CYS 129 III CYS 129 1_555 I SG CYS 179 III CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
disulf ? disulf14 I SG CYS 154 III CYS 154 1_555 J SG CYS 172 JJJ CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf15 J SG CYS 23 JJJ CYS 23 1_555 J SG CYS 91 JJJ CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? 
disulf ? disulf16 J SG CYS 146 JJJ CYS 146 1_555 J SG CYS 211 JJJ CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7Q9B 
_atom_sites.fract_transf_matrix[1][1]    0.010003 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000758 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018641 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004928 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 6 EDO AAA 1 301 1 EDO EDO . 
L 6 EDO GGG 1 101 2 EDO EDO . 
M 7 HOH AAA 1 401 38 HOH HOH . 
M 7 HOH AAA 2 402 50 HOH HOH . 
M 7 HOH AAA 3 403 53 HOH HOH . 
M 7 HOH AAA 4 404 41 HOH HOH . 
M 7 HOH AAA 5 405 5 HOH HOH . 
M 7 HOH AAA 6 406 3 HOH HOH . 
M 7 HOH AAA 7 407 32 HOH HOH . 
M 7 HOH AAA 8 408 55 HOH HOH . 
M 7 HOH AAA 9 409 52 HOH HOH . 
M 7 HOH AAA 10 410 46 HOH HOH . 
M 7 HOH AAA 11 411 28 HOH HOH . 
N 7 HOH BBB 1 101 12 HOH HOH . 
N 7 HOH BBB 2 102 14 HOH HOH . 
N 7 HOH BBB 3 103 29 HOH HOH . 
N 7 HOH BBB 4 104 25 HOH HOH . 
N 7 HOH BBB 5 105 11 HOH HOH . 
N 7 HOH BBB 6 106 31 HOH HOH . 
N 7 HOH BBB 7 107 6 HOH HOH . 
O 7 HOH CCC 1 101 21 HOH HOH . 
P 7 HOH DDD 1 201 34 HOH HOH . 
P 7 HOH DDD 2 202 49 HOH HOH . 
P 7 HOH DDD 3 203 7 HOH HOH . 
P 7 HOH DDD 4 204 15 HOH HOH . 
P 7 HOH DDD 5 205 17 HOH HOH . 
P 7 HOH DDD 6 206 23 HOH HOH . 
P 7 HOH DDD 7 207 30 HOH HOH . 
P 7 HOH DDD 8 208 19 HOH HOH . 
P 7 HOH DDD 9 209 10 HOH HOH . 
P 7 HOH DDD 10 210 26 HOH HOH . 
P 7 HOH DDD 11 211 35 HOH HOH . 
Q 7 HOH EEE 1 301 16 HOH HOH . 
Q 7 HOH EEE 2 302 42 HOH HOH . 
Q 7 HOH EEE 3 303 40 HOH HOH . 
Q 7 HOH EEE 4 304 36 HOH HOH . 
Q 7 HOH EEE 5 305 54 HOH HOH . 
R 7 HOH FFF 1 301 37 HOH HOH . 
R 7 HOH FFF 2 302 20 HOH HOH . 
R 7 HOH FFF 3 303 43 HOH HOH . 
R 7 HOH FFF 4 304 51 HOH HOH . 
R 7 HOH FFF 5 305 8 HOH HOH . 
R 7 HOH FFF 6 306 33 HOH HOH . 
R 7 HOH FFF 7 307 9 HOH HOH . 
S 7 HOH GGG 1 201 47 HOH HOH . 
S 7 HOH GGG 2 202 27 HOH HOH . 
S 7 HOH GGG 3 203 22 HOH HOH . 
S 7 HOH GGG 4 204 2 HOH HOH . 
S 7 HOH GGG 5 205 1 HOH HOH . 
S 7 HOH GGG 6 206 4 HOH HOH . 
T 7 HOH III 1 201 13 HOH HOH . 
T 7 HOH III 2 202 48 HOH HOH . 
U 7 HOH JJJ 1 301 24 HOH HOH . 
U 7 HOH JJJ 2 302 18 HOH HOH . 
U 7 HOH JJJ 3 303 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . L 6 38.297 34.351 77.717 1 38.27 0 C1 EDO 101 GGG 1 
HETATM 2 O O1 EDO . . . L 6 39.67 34.473 77.386 1 37.61 0 O1 EDO 101 GGG 1 
HETATM 3 C C2 EDO . . . L 6 37.626 35.663 77.933 1 38.05 0 C2 EDO 101 GGG 1 
HETATM 4 O O2 EDO . . . L 6 37.389 36.369 76.729 1 37.57 0 O2 EDO 101 GGG 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#