data_7Q9W # _model_server_result.job_id hgBT2T3-OU_gBn25XeV-xw _model_server_result.datetime_utc '2024-11-29 07:25:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q9w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 7Q9W # _exptl.entry_id 7Q9W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 123.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(aminomethyl)pyridin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Q9W _cell.length_a 50.593 _cell.length_b 68.715 _cell.length_c 117.119 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q9W _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -50.593 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H9 N3' _chem_comp.formula_weight 123.156 _chem_comp.id 9NN _chem_comp.mon_nstd_flag . _chem_comp.name 4-(aminomethyl)pyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C02 9NN sing 1 n n C02 C03 9NN sing 2 n n C03 C08 9NN doub 3 n y C03 C04 9NN sing 4 n y C08 C07 9NN sing 5 n y C04 C05 9NN doub 6 n y C07 N09 9NN sing 7 n n C07 N06 9NN doub 8 n y C05 N06 9NN sing 9 n y C02 H1 9NN sing 10 n n C02 H2 9NN sing 11 n n C04 H3 9NN sing 12 n n C05 H4 9NN sing 13 n n C08 H5 9NN sing 14 n n N01 H6 9NN sing 15 n n N01 H7 9NN sing 16 n n N09 H9 9NN sing 17 n n N09 H10 9NN sing 18 n n # _atom_sites.entry_id 7Q9W _atom_sites.fract_transf_matrix[1][1] 0.019766 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014553 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008538 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9NN A 1 801 1 9NN LIG . C 3 GZ6 A 1 802 1 GZ6 GZ6 . D 4 HOH A 1 901 117 HOH HOH . D 4 HOH A 2 902 67 HOH HOH . D 4 HOH A 3 903 20 HOH HOH . D 4 HOH A 4 904 118 HOH HOH . D 4 HOH A 5 905 64 HOH HOH . D 4 HOH A 6 906 24 HOH HOH . D 4 HOH A 7 907 77 HOH HOH . D 4 HOH A 8 908 29 HOH HOH . D 4 HOH A 9 909 114 HOH HOH . D 4 HOH A 10 910 9 HOH HOH . D 4 HOH A 11 911 75 HOH HOH . D 4 HOH A 12 912 135 HOH HOH . D 4 HOH A 13 913 58 HOH HOH . D 4 HOH A 14 914 28 HOH HOH . D 4 HOH A 15 915 69 HOH HOH . D 4 HOH A 16 916 43 HOH HOH . D 4 HOH A 17 917 70 HOH HOH . D 4 HOH A 18 918 56 HOH HOH . D 4 HOH A 19 919 50 HOH HOH . D 4 HOH A 20 920 14 HOH HOH . D 4 HOH A 21 921 11 HOH HOH . D 4 HOH A 22 922 168 HOH HOH . D 4 HOH A 23 923 116 HOH HOH . D 4 HOH A 24 924 27 HOH HOH . D 4 HOH A 25 925 4 HOH HOH . D 4 HOH A 26 926 55 HOH HOH . D 4 HOH A 27 927 2 HOH HOH . D 4 HOH A 28 928 33 HOH HOH . D 4 HOH A 29 929 17 HOH HOH . D 4 HOH A 30 930 46 HOH HOH . D 4 HOH A 31 931 16 HOH HOH . D 4 HOH A 32 932 124 HOH HOH . D 4 HOH A 33 933 68 HOH HOH . D 4 HOH A 34 934 86 HOH HOH . D 4 HOH A 35 935 40 HOH HOH . D 4 HOH A 36 936 30 HOH HOH . D 4 HOH A 37 937 91 HOH HOH . D 4 HOH A 38 938 122 HOH HOH . D 4 HOH A 39 939 94 HOH HOH . D 4 HOH A 40 940 1 HOH HOH . D 4 HOH A 41 941 110 HOH HOH . D 4 HOH A 42 942 108 HOH HOH . D 4 HOH A 43 943 85 HOH HOH . D 4 HOH A 44 944 79 HOH HOH . D 4 HOH A 45 945 8 HOH HOH . D 4 HOH A 46 946 63 HOH HOH . D 4 HOH A 47 947 25 HOH HOH . D 4 HOH A 48 948 6 HOH HOH . D 4 HOH A 49 949 3 HOH HOH . D 4 HOH A 50 950 133 HOH HOH . D 4 HOH A 51 951 84 HOH HOH . D 4 HOH A 52 952 49 HOH HOH . D 4 HOH A 53 953 19 HOH HOH . D 4 HOH A 54 954 34 HOH HOH . D 4 HOH A 55 955 5 HOH HOH . D 4 HOH A 56 956 53 HOH HOH . D 4 HOH A 57 957 71 HOH HOH . D 4 HOH A 58 958 72 HOH HOH . D 4 HOH A 59 959 115 HOH HOH . D 4 HOH A 60 960 137 HOH HOH . D 4 HOH A 61 961 13 HOH HOH . D 4 HOH A 62 962 12 HOH HOH . D 4 HOH A 63 963 65 HOH HOH . D 4 HOH A 64 964 22 HOH HOH . D 4 HOH A 65 965 105 HOH HOH . D 4 HOH A 66 966 101 HOH HOH . D 4 HOH A 67 967 102 HOH HOH . D 4 HOH A 68 968 26 HOH HOH . D 4 HOH A 69 969 47 HOH HOH . D 4 HOH A 70 970 51 HOH HOH . D 4 HOH A 71 971 104 HOH HOH . D 4 HOH A 72 972 37 HOH HOH . D 4 HOH A 73 973 31 HOH HOH . D 4 HOH A 74 974 88 HOH HOH . D 4 HOH A 75 975 153 HOH HOH . D 4 HOH A 76 976 125 HOH HOH . D 4 HOH A 77 977 59 HOH HOH . D 4 HOH A 78 978 159 HOH HOH . D 4 HOH A 79 979 90 HOH HOH . D 4 HOH A 80 980 38 HOH HOH . D 4 HOH A 81 981 57 HOH HOH . D 4 HOH A 82 982 23 HOH HOH . D 4 HOH A 83 983 7 HOH HOH . D 4 HOH A 84 984 15 HOH HOH . D 4 HOH A 85 985 10 HOH HOH . D 4 HOH A 86 986 35 HOH HOH . D 4 HOH A 87 987 39 HOH HOH . D 4 HOH A 88 988 81 HOH HOH . D 4 HOH A 89 989 21 HOH HOH . D 4 HOH A 90 990 134 HOH HOH . D 4 HOH A 91 991 32 HOH HOH . D 4 HOH A 92 992 45 HOH HOH . D 4 HOH A 93 993 41 HOH HOH . D 4 HOH A 94 994 18 HOH HOH . D 4 HOH A 95 995 54 HOH HOH . D 4 HOH A 96 996 163 HOH HOH . D 4 HOH A 97 997 89 HOH HOH . D 4 HOH A 98 998 103 HOH HOH . D 4 HOH A 99 999 80 HOH HOH . D 4 HOH A 100 1000 167 HOH HOH . D 4 HOH A 101 1001 143 HOH HOH . D 4 HOH A 102 1002 44 HOH HOH . D 4 HOH A 103 1003 36 HOH HOH . D 4 HOH A 104 1004 60 HOH HOH . D 4 HOH A 105 1005 48 HOH HOH . D 4 HOH A 106 1006 141 HOH HOH . D 4 HOH A 107 1007 160 HOH HOH . D 4 HOH A 108 1008 138 HOH HOH . D 4 HOH A 109 1009 161 HOH HOH . D 4 HOH A 110 1010 158 HOH HOH . D 4 HOH A 111 1011 73 HOH HOH . D 4 HOH A 112 1012 111 HOH HOH . D 4 HOH A 113 1013 165 HOH HOH . D 4 HOH A 114 1014 140 HOH HOH . D 4 HOH A 115 1015 98 HOH HOH . D 4 HOH A 116 1016 100 HOH HOH . D 4 HOH A 117 1017 82 HOH HOH . D 4 HOH A 118 1018 99 HOH HOH . D 4 HOH A 119 1019 61 HOH HOH . D 4 HOH A 120 1020 97 HOH HOH . D 4 HOH A 121 1021 95 HOH HOH . D 4 HOH A 122 1022 74 HOH HOH . D 4 HOH A 123 1023 87 HOH HOH . D 4 HOH A 124 1024 106 HOH HOH . D 4 HOH A 125 1025 42 HOH HOH . D 4 HOH A 126 1026 92 HOH HOH . D 4 HOH A 127 1027 119 HOH HOH . D 4 HOH A 128 1028 112 HOH HOH . D 4 HOH A 129 1029 131 HOH HOH . D 4 HOH A 130 1030 52 HOH HOH . D 4 HOH A 131 1031 107 HOH HOH . D 4 HOH A 132 1032 142 HOH HOH . D 4 HOH A 133 1033 113 HOH HOH . D 4 HOH A 134 1034 120 HOH HOH . D 4 HOH A 135 1035 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 9NN . . . B 2 -34.188 -14.335 -23.373 1 31.89 ? C02 9NN 801 A 1 HETATM 2 C C03 9NN . . . B 2 -34.558 -14.818 -21.977 1 40.81 ? C03 9NN 801 A 1 HETATM 3 C C04 9NN . . . B 2 -33.574 -15.195 -21.051 1 33.46 ? C04 9NN 801 A 1 HETATM 4 C C05 9NN . . . B 2 -34.013 -15.614 -19.778 1 44.19 ? C05 9NN 801 A 1 HETATM 5 C C07 9NN . . . B 2 -36.302 -15.306 -20.264 1 42.53 ? C07 9NN 801 A 1 HETATM 6 C C08 9NN . . . B 2 -35.923 -14.877 -21.559 1 37.5 ? C08 9NN 801 A 1 HETATM 7 N N01 9NN . . . B 2 -34.509 -12.879 -23.56 1 37.17 ? N01 9NN 801 A 1 HETATM 8 N N06 9NN . . . B 2 -35.302 -15.682 -19.356 1 43.96 ? N06 9NN 801 A 1 HETATM 9 N N09 9NN . . . B 2 -37.629 -15.379 -19.832 1 42.98 ? N09 9NN 801 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 407 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #