data_7Q9Z
#
_model_server_result.job_id            YnCJHcjyahh-FKFM8_NI-w 
_model_server_result.datetime_utc      '2025-07-18 04:21:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7q9z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":505}' 
#
_entry.id    7Q9Z 
#
_exptl.entry_id    7Q9Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         71.3 
_cell.angle_beta          75.94 
_cell.angle_gamma         85.73 
_cell.entry_id            7Q9Z 
_cell.length_a            58.15 
_cell.length_b            60.72 
_cell.length_c            61.8 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Q9Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 468 AAA GLU 434 1_555 G NA NA . AAA NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc2 B O ALA 138 BBB ALA 104 1_555 L NA NA . BBB NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? 
metalc ? metalc3 B O THR 141 BBB THR 107 1_555 L NA NA . BBB NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.954 ? 
metalc ? metalc4 B OG1 THR 141 BBB THR 107 1_555 L NA NA . BBB NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? 
metalc ? metalc5 B O PRO 142 BBB PRO 108 1_555 L NA NA . BBB NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? 
metalc ? metalc6 L NA NA . BBB NA 505 1_555 N O HOH . BBB HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7Q9Z 
_atom_sites.fract_transf_matrix[1][1]    0.017197 
_atom_sites.fract_transf_matrix[1][2]    -0.001284 
_atom_sites.fract_transf_matrix[1][3]    -0.004111 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016515 
_atom_sites.fract_transf_matrix[2][3]    -0.005438 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017562 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AN7 AAA 1 501 500 AN7 AN7 . 
D 3 EDO AAA 1 502 501 EDO EDO . 
E 3 EDO AAA 1 503 502 EDO EDO . 
F 4 CL AAA 1 504 1 CL CL . 
G 5 NA AAA 1 505 1 NA NA . 
H 2 AN7 BBB 1 501 500 AN7 AN7 . 
I 3 EDO BBB 1 502 501 EDO EDO . 
J 3 EDO BBB 1 503 502 EDO EDO . 
K 3 EDO BBB 1 504 503 EDO EDO . 
L 5 NA BBB 1 505 2 NA NA . 
M 6 HOH AAA 1 601 83 HOH HOH . 
M 6 HOH AAA 2 602 10 HOH HOH . 
M 6 HOH AAA 3 603 32 HOH HOH . 
M 6 HOH AAA 4 604 39 HOH HOH . 
M 6 HOH AAA 5 605 37 HOH HOH . 
M 6 HOH AAA 6 606 26 HOH HOH . 
M 6 HOH AAA 7 607 24 HOH HOH . 
M 6 HOH AAA 8 608 9 HOH HOH . 
M 6 HOH AAA 9 609 25 HOH HOH . 
M 6 HOH AAA 10 610 64 HOH HOH . 
M 6 HOH AAA 11 611 35 HOH HOH . 
M 6 HOH AAA 12 612 29 HOH HOH . 
M 6 HOH AAA 13 613 6 HOH HOH . 
M 6 HOH AAA 14 614 3 HOH HOH . 
M 6 HOH AAA 15 615 38 HOH HOH . 
M 6 HOH AAA 16 616 73 HOH HOH . 
M 6 HOH AAA 17 617 19 HOH HOH . 
M 6 HOH AAA 18 618 2 HOH HOH . 
M 6 HOH AAA 19 619 40 HOH HOH . 
M 6 HOH AAA 20 620 18 HOH HOH . 
M 6 HOH AAA 21 621 79 HOH HOH . 
M 6 HOH AAA 22 622 23 HOH HOH . 
M 6 HOH AAA 23 623 11 HOH HOH . 
M 6 HOH AAA 24 624 77 HOH HOH . 
M 6 HOH AAA 25 625 16 HOH HOH . 
M 6 HOH AAA 26 626 17 HOH HOH . 
M 6 HOH AAA 27 627 30 HOH HOH . 
M 6 HOH AAA 28 628 14 HOH HOH . 
M 6 HOH AAA 29 629 34 HOH HOH . 
M 6 HOH AAA 30 630 78 HOH HOH . 
M 6 HOH AAA 31 631 21 HOH HOH . 
M 6 HOH AAA 32 632 12 HOH HOH . 
M 6 HOH AAA 33 633 31 HOH HOH . 
M 6 HOH AAA 34 634 33 HOH HOH . 
M 6 HOH AAA 35 635 65 HOH HOH . 
M 6 HOH AAA 36 636 74 HOH HOH . 
M 6 HOH AAA 37 637 69 HOH HOH . 
M 6 HOH AAA 38 638 63 HOH HOH . 
M 6 HOH AAA 39 639 66 HOH HOH . 
M 6 HOH AAA 40 640 22 HOH HOH . 
M 6 HOH AAA 41 641 36 HOH HOH . 
M 6 HOH AAA 42 642 7 HOH HOH . 
M 6 HOH AAA 43 643 4 HOH HOH . 
M 6 HOH AAA 44 644 67 HOH HOH . 
N 6 HOH BBB 1 601 46 HOH HOH . 
N 6 HOH BBB 2 602 48 HOH HOH . 
N 6 HOH BBB 3 603 58 HOH HOH . 
N 6 HOH BBB 4 604 15 HOH HOH . 
N 6 HOH BBB 5 605 43 HOH HOH . 
N 6 HOH BBB 6 606 60 HOH HOH . 
N 6 HOH BBB 7 607 53 HOH HOH . 
N 6 HOH BBB 8 608 56 HOH HOH . 
N 6 HOH BBB 9 609 55 HOH HOH . 
N 6 HOH BBB 10 610 1 HOH HOH . 
N 6 HOH BBB 11 611 57 HOH HOH . 
N 6 HOH BBB 12 612 44 HOH HOH . 
N 6 HOH BBB 13 613 71 HOH HOH . 
N 6 HOH BBB 14 614 62 HOH HOH . 
N 6 HOH BBB 15 615 59 HOH HOH . 
N 6 HOH BBB 16 616 50 HOH HOH . 
N 6 HOH BBB 17 617 41 HOH HOH . 
N 6 HOH BBB 18 618 54 HOH HOH . 
N 6 HOH BBB 19 619 61 HOH HOH . 
N 6 HOH BBB 20 620 5 HOH HOH . 
N 6 HOH BBB 21 621 42 HOH HOH . 
N 6 HOH BBB 22 622 51 HOH HOH . 
N 6 HOH BBB 23 623 82 HOH HOH . 
N 6 HOH BBB 24 624 70 HOH HOH . 
N 6 HOH BBB 25 625 80 HOH HOH . 
N 6 HOH BBB 26 626 75 HOH HOH . 
N 6 HOH BBB 27 627 81 HOH HOH . 
N 6 HOH BBB 28 628 49 HOH HOH . 
N 6 HOH BBB 29 629 52 HOH HOH . 
N 6 HOH BBB 30 630 45 HOH HOH . 
N 6 HOH BBB 31 631 76 HOH HOH . 
N 6 HOH BBB 32 632 72 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         L 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               -24.316 
_atom_site.Cartn_y               -0.773 
_atom_site.Cartn_z               -6.635 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        84.48 
_atom_site.pdbx_formal_charge    0 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           505 
_atom_site.auth_asym_id          BBB 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           445 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           1 
#