data_7QA4 # _model_server_result.job_id LUtDZ6noI5tZT5R7kGax1A _model_server_result.datetime_utc '2024-10-17 15:21:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qa4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 7QA4 # _exptl.entry_id 7QA4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QA4 _cell.length_a 154.094 _cell.length_b 154.094 _cell.length_c 154.094 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QA4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 6 ? 3 5 3 MAN BMA C1 O1 . O6 HO6 . sing 7 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 602 NAG 2 n B NAG 2 B 2 NAG A 603 NAG 2 n B BMA 3 B 3 BMA A 604 BMA 3 n C NAG 1 C 1 NAG A 605 NAG 3 n C NAG 2 C 2 NAG A 606 NAG 3 n C BMA 3 C 3 BMA A 607 BMA 3 n C MAN 4 C 4 MAN A 614 MAN 3 n C MAN 5 C 5 MAN A 615 MAN 4 n D NAG 1 D 1 NAG A 610 NAG 4 n D NAG 2 D 2 NAG A 611 NAG 4 n E NAG 1 E 1 NAG A 612 NAG 4 n E NAG 2 E 2 NAG A 613 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 A SG CYS 466 A CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 52 A CYS 52 1_555 A SG CYS 277 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 76 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 A SG CYS 97 A CYS 97 1_555 A SG CYS 139 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 A SG CYS 281 A CYS 281 1_555 A SG CYS 305 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 A SG CYS 473 A CYS 473 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 A ND2 ASN 22 A ASN 22 1_555 F C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 38 A ASN 38 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale3 A ND2 ASN 81 A ASN 81 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale4 A ND2 ASN 165 A ASN 165 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale5 A ND2 ASN 285 A ASN 285 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale6 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale7 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale9 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale10 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale11 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale12 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale13 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7QA4 _atom_sites.fract_transf_matrix[1][1] 0.00649 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00649 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00649 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 NAG A 1 601 616 NAG NAG . G 6 NO3 A 1 602 1 NO3 NO3 . H 7 HOH A 1 701 187 HOH HOH . H 7 HOH A 2 702 205 HOH HOH . H 7 HOH A 3 703 251 HOH HOH . H 7 HOH A 4 704 136 HOH HOH . H 7 HOH A 5 705 198 HOH HOH . H 7 HOH A 6 706 255 HOH HOH . H 7 HOH A 7 707 257 HOH HOH . H 7 HOH A 8 708 169 HOH HOH . H 7 HOH A 9 709 8 HOH HOH . H 7 HOH A 10 710 152 HOH HOH . H 7 HOH A 11 711 176 HOH HOH . H 7 HOH A 12 712 29 HOH HOH . H 7 HOH A 13 713 10 HOH HOH . H 7 HOH A 14 714 144 HOH HOH . H 7 HOH A 15 715 154 HOH HOH . H 7 HOH A 16 716 31 HOH HOH . H 7 HOH A 17 717 252 HOH HOH . H 7 HOH A 18 718 60 HOH HOH . H 7 HOH A 19 719 196 HOH HOH . H 7 HOH A 20 720 214 HOH HOH . H 7 HOH A 21 721 164 HOH HOH . H 7 HOH A 22 722 146 HOH HOH . H 7 HOH A 23 723 219 HOH HOH . H 7 HOH A 24 724 182 HOH HOH . H 7 HOH A 25 725 190 HOH HOH . H 7 HOH A 26 726 7 HOH HOH . H 7 HOH A 27 727 225 HOH HOH . H 7 HOH A 28 728 203 HOH HOH . H 7 HOH A 29 729 181 HOH HOH . H 7 HOH A 30 730 207 HOH HOH . H 7 HOH A 31 731 147 HOH HOH . H 7 HOH A 32 732 230 HOH HOH . H 7 HOH A 33 733 206 HOH HOH . H 7 HOH A 34 734 180 HOH HOH . H 7 HOH A 35 735 173 HOH HOH . H 7 HOH A 36 736 11 HOH HOH . H 7 HOH A 37 737 166 HOH HOH . H 7 HOH A 38 738 22 HOH HOH . H 7 HOH A 39 739 246 HOH HOH . H 7 HOH A 40 740 250 HOH HOH . H 7 HOH A 41 741 12 HOH HOH . H 7 HOH A 42 742 156 HOH HOH . H 7 HOH A 43 743 142 HOH HOH . H 7 HOH A 44 744 140 HOH HOH . H 7 HOH A 45 745 118 HOH HOH . H 7 HOH A 46 746 30 HOH HOH . H 7 HOH A 47 747 178 HOH HOH . H 7 HOH A 48 748 5 HOH HOH . H 7 HOH A 49 749 123 HOH HOH . H 7 HOH A 50 750 171 HOH HOH . H 7 HOH A 51 751 135 HOH HOH . H 7 HOH A 52 752 258 HOH HOH . H 7 HOH A 53 753 33 HOH HOH . H 7 HOH A 54 754 200 HOH HOH . H 7 HOH A 55 755 161 HOH HOH . H 7 HOH A 56 756 102 HOH HOH . H 7 HOH A 57 757 52 HOH HOH . H 7 HOH A 58 758 165 HOH HOH . H 7 HOH A 59 759 3 HOH HOH . H 7 HOH A 60 760 229 HOH HOH . H 7 HOH A 61 761 228 HOH HOH . H 7 HOH A 62 762 45 HOH HOH . H 7 HOH A 63 763 174 HOH HOH . H 7 HOH A 64 764 185 HOH HOH . H 7 HOH A 65 765 15 HOH HOH . H 7 HOH A 66 766 2 HOH HOH . H 7 HOH A 67 767 9 HOH HOH . H 7 HOH A 68 768 27 HOH HOH . H 7 HOH A 69 769 170 HOH HOH . H 7 HOH A 70 770 227 HOH HOH . H 7 HOH A 71 771 155 HOH HOH . H 7 HOH A 72 772 78 HOH HOH . H 7 HOH A 73 773 25 HOH HOH . H 7 HOH A 74 774 195 HOH HOH . H 7 HOH A 75 775 168 HOH HOH . H 7 HOH A 76 776 212 HOH HOH . H 7 HOH A 77 777 43 HOH HOH . H 7 HOH A 78 778 138 HOH HOH . H 7 HOH A 79 779 145 HOH HOH . H 7 HOH A 80 780 108 HOH HOH . H 7 HOH A 81 781 209 HOH HOH . H 7 HOH A 82 782 16 HOH HOH . H 7 HOH A 83 783 54 HOH HOH . H 7 HOH A 84 784 215 HOH HOH . H 7 HOH A 85 785 13 HOH HOH . H 7 HOH A 86 786 150 HOH HOH . H 7 HOH A 87 787 259 HOH HOH . H 7 HOH A 88 788 49 HOH HOH . H 7 HOH A 89 789 183 HOH HOH . H 7 HOH A 90 790 72 HOH HOH . H 7 HOH A 91 791 28 HOH HOH . H 7 HOH A 92 792 238 HOH HOH . H 7 HOH A 93 793 17 HOH HOH . H 7 HOH A 94 794 151 HOH HOH . H 7 HOH A 95 795 92 HOH HOH . H 7 HOH A 96 796 141 HOH HOH . H 7 HOH A 97 797 39 HOH HOH . H 7 HOH A 98 798 41 HOH HOH . H 7 HOH A 99 799 189 HOH HOH . H 7 HOH A 100 800 211 HOH HOH . H 7 HOH A 101 801 159 HOH HOH . H 7 HOH A 102 802 46 HOH HOH . H 7 HOH A 103 803 192 HOH HOH . H 7 HOH A 104 804 103 HOH HOH . H 7 HOH A 105 805 260 HOH HOH . H 7 HOH A 106 806 26 HOH HOH . H 7 HOH A 107 807 149 HOH HOH . H 7 HOH A 108 808 236 HOH HOH . H 7 HOH A 109 809 160 HOH HOH . H 7 HOH A 110 810 177 HOH HOH . H 7 HOH A 111 811 1 HOH HOH . H 7 HOH A 112 812 184 HOH HOH . H 7 HOH A 113 813 194 HOH HOH . H 7 HOH A 114 814 89 HOH HOH . H 7 HOH A 115 815 253 HOH HOH . H 7 HOH A 116 816 131 HOH HOH . H 7 HOH A 117 817 241 HOH HOH . H 7 HOH A 118 818 167 HOH HOH . H 7 HOH A 119 819 224 HOH HOH . H 7 HOH A 120 820 256 HOH HOH . H 7 HOH A 121 821 128 HOH HOH . H 7 HOH A 122 822 14 HOH HOH . H 7 HOH A 123 823 157 HOH HOH . H 7 HOH A 124 824 82 HOH HOH . H 7 HOH A 125 825 191 HOH HOH . H 7 HOH A 126 826 40 HOH HOH . H 7 HOH A 127 827 61 HOH HOH . H 7 HOH A 128 828 101 HOH HOH . H 7 HOH A 129 829 213 HOH HOH . H 7 HOH A 130 830 249 HOH HOH . H 7 HOH A 131 831 48 HOH HOH . H 7 HOH A 132 832 254 HOH HOH . H 7 HOH A 133 833 139 HOH HOH . H 7 HOH A 134 834 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 5 2.127 -31.426 5.064 1 121.43 ? C1 NAG 601 A 1 HETATM 2 C C2 NAG . . . F 5 1.14 -32.478 5.56 1 125.06 ? C2 NAG 601 A 1 HETATM 3 C C3 NAG . . . F 5 0.725 -33.417 4.427 1 127.08 ? C3 NAG 601 A 1 HETATM 4 C C4 NAG . . . F 5 0.288 -32.639 3.185 1 132.19 ? C4 NAG 601 A 1 HETATM 5 C C5 NAG . . . F 5 1.33 -31.588 2.804 1 127.23 ? C5 NAG 601 A 1 HETATM 6 C C6 NAG . . . F 5 0.857 -30.729 1.637 1 121.69 ? C6 NAG 601 A 1 HETATM 7 C C7 NAG . . . F 5 1.608 -32.939 7.972 0 128.5 ? C7 NAG 601 A 1 HETATM 8 C C8 NAG . . . F 5 2.341 -33.836 8.927 0 128.07 ? C8 NAG 601 A 1 HETATM 9 N N2 NAG . . . F 5 1.74 -33.22 6.655 1 111.82 ? N2 NAG 601 A 1 HETATM 10 O O3 NAG . . . F 5 -0.353 -34.249 4.865 1 108.96 ? O3 NAG 601 A 1 HETATM 11 O O4 NAG . . . F 5 0.081 -33.538 2.088 1 135.26 ? O4 NAG 601 A 1 HETATM 12 O O5 NAG . . . F 5 1.583 -30.745 3.928 1 130.19 ? O5 NAG 601 A 1 HETATM 13 O O6 NAG . . . F 5 0.836 -31.505 0.449 0 131.28 ? O6 NAG 601 A 1 HETATM 14 O O7 NAG . . . F 5 0.943 -31.999 8.381 0 127.83 ? O7 NAG 601 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 14 #