data_7QA4
#
_model_server_result.job_id            an0DEb6GLrJH420CmCCoGA 
_model_server_result.datetime_utc      '2024-12-04 17:39:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7qa4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":602}' 
#
_entry.id    7QA4 
#
_exptl.entry_id    7QA4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.005 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NITRATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7QA4 
_cell.length_a            154.094 
_cell.length_b            154.094 
_cell.length_c            154.094 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7QA4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        199 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 21 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 
3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide 
3 oligosaccharide 
4 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
4 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
5 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
6 ? 3 5 3 MAN BMA C1 O1 . O6 HO6 . sing 
7 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG A 602 NAG 
2 n B NAG 2 B 2 NAG A 603 NAG 
2 n B BMA 3 B 3 BMA A 604 BMA 
3 n C NAG 1 C 1 NAG A 605 NAG 
3 n C NAG 2 C 2 NAG A 606 NAG 
3 n C BMA 3 C 3 BMA A 607 BMA 
3 n C MAN 4 C 4 MAN A 614 MAN 
3 n C MAN 5 C 5 MAN A 615 MAN 
4 n D NAG 1 D 1 NAG A 610 NAG 
4 n D NAG 2 D 2 NAG A 611 NAG 
4 n E NAG 1 E 1 NAG A 612 NAG 
4 n E NAG 2 E 2 NAG A 613 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 A SG CYS 466 A CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 52 A CYS 52 1_555 A SG CYS 277 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 76 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf4 A SG CYS 97 A CYS 97 1_555 A SG CYS 139 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf5 A SG CYS 281 A CYS 281 1_555 A SG CYS 305 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf6 A SG CYS 473 A CYS 473 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
covale ? covale1 A ND2 ASN 22 A ASN 22 1_555 F C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale2 A ND2 ASN 38 A ASN 38 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale3 A ND2 ASN 81 A ASN 81 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale4 A ND2 ASN 165 A ASN 165 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale5 A ND2 ASN 285 A ASN 285 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale6 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale7 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
covale ? covale9 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale10 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale11 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale12 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale13 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
#
_chem_comp.formula           'N O3 -1' 
_chem_comp.formula_weight    62.005 
_chem_comp.id                NO3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NITRATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N O1 NO3 doub 315 n n 
N O2 NO3 sing 316 n n 
N O3 NO3 sing 317 n n 
#
_atom_sites.entry_id                     7QA4 
_atom_sites.fract_transf_matrix[1][1]    0.00649 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00649 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00649 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 5 NAG A 1 601 616 NAG NAG . 
G 6 NO3 A 1 602 1 NO3 NO3 . 
H 7 HOH A 1 701 187 HOH HOH . 
H 7 HOH A 2 702 205 HOH HOH . 
H 7 HOH A 3 703 251 HOH HOH . 
H 7 HOH A 4 704 136 HOH HOH . 
H 7 HOH A 5 705 198 HOH HOH . 
H 7 HOH A 6 706 255 HOH HOH . 
H 7 HOH A 7 707 257 HOH HOH . 
H 7 HOH A 8 708 169 HOH HOH . 
H 7 HOH A 9 709 8 HOH HOH . 
H 7 HOH A 10 710 152 HOH HOH . 
H 7 HOH A 11 711 176 HOH HOH . 
H 7 HOH A 12 712 29 HOH HOH . 
H 7 HOH A 13 713 10 HOH HOH . 
H 7 HOH A 14 714 144 HOH HOH . 
H 7 HOH A 15 715 154 HOH HOH . 
H 7 HOH A 16 716 31 HOH HOH . 
H 7 HOH A 17 717 252 HOH HOH . 
H 7 HOH A 18 718 60 HOH HOH . 
H 7 HOH A 19 719 196 HOH HOH . 
H 7 HOH A 20 720 214 HOH HOH . 
H 7 HOH A 21 721 164 HOH HOH . 
H 7 HOH A 22 722 146 HOH HOH . 
H 7 HOH A 23 723 219 HOH HOH . 
H 7 HOH A 24 724 182 HOH HOH . 
H 7 HOH A 25 725 190 HOH HOH . 
H 7 HOH A 26 726 7 HOH HOH . 
H 7 HOH A 27 727 225 HOH HOH . 
H 7 HOH A 28 728 203 HOH HOH . 
H 7 HOH A 29 729 181 HOH HOH . 
H 7 HOH A 30 730 207 HOH HOH . 
H 7 HOH A 31 731 147 HOH HOH . 
H 7 HOH A 32 732 230 HOH HOH . 
H 7 HOH A 33 733 206 HOH HOH . 
H 7 HOH A 34 734 180 HOH HOH . 
H 7 HOH A 35 735 173 HOH HOH . 
H 7 HOH A 36 736 11 HOH HOH . 
H 7 HOH A 37 737 166 HOH HOH . 
H 7 HOH A 38 738 22 HOH HOH . 
H 7 HOH A 39 739 246 HOH HOH . 
H 7 HOH A 40 740 250 HOH HOH . 
H 7 HOH A 41 741 12 HOH HOH . 
H 7 HOH A 42 742 156 HOH HOH . 
H 7 HOH A 43 743 142 HOH HOH . 
H 7 HOH A 44 744 140 HOH HOH . 
H 7 HOH A 45 745 118 HOH HOH . 
H 7 HOH A 46 746 30 HOH HOH . 
H 7 HOH A 47 747 178 HOH HOH . 
H 7 HOH A 48 748 5 HOH HOH . 
H 7 HOH A 49 749 123 HOH HOH . 
H 7 HOH A 50 750 171 HOH HOH . 
H 7 HOH A 51 751 135 HOH HOH . 
H 7 HOH A 52 752 258 HOH HOH . 
H 7 HOH A 53 753 33 HOH HOH . 
H 7 HOH A 54 754 200 HOH HOH . 
H 7 HOH A 55 755 161 HOH HOH . 
H 7 HOH A 56 756 102 HOH HOH . 
H 7 HOH A 57 757 52 HOH HOH . 
H 7 HOH A 58 758 165 HOH HOH . 
H 7 HOH A 59 759 3 HOH HOH . 
H 7 HOH A 60 760 229 HOH HOH . 
H 7 HOH A 61 761 228 HOH HOH . 
H 7 HOH A 62 762 45 HOH HOH . 
H 7 HOH A 63 763 174 HOH HOH . 
H 7 HOH A 64 764 185 HOH HOH . 
H 7 HOH A 65 765 15 HOH HOH . 
H 7 HOH A 66 766 2 HOH HOH . 
H 7 HOH A 67 767 9 HOH HOH . 
H 7 HOH A 68 768 27 HOH HOH . 
H 7 HOH A 69 769 170 HOH HOH . 
H 7 HOH A 70 770 227 HOH HOH . 
H 7 HOH A 71 771 155 HOH HOH . 
H 7 HOH A 72 772 78 HOH HOH . 
H 7 HOH A 73 773 25 HOH HOH . 
H 7 HOH A 74 774 195 HOH HOH . 
H 7 HOH A 75 775 168 HOH HOH . 
H 7 HOH A 76 776 212 HOH HOH . 
H 7 HOH A 77 777 43 HOH HOH . 
H 7 HOH A 78 778 138 HOH HOH . 
H 7 HOH A 79 779 145 HOH HOH . 
H 7 HOH A 80 780 108 HOH HOH . 
H 7 HOH A 81 781 209 HOH HOH . 
H 7 HOH A 82 782 16 HOH HOH . 
H 7 HOH A 83 783 54 HOH HOH . 
H 7 HOH A 84 784 215 HOH HOH . 
H 7 HOH A 85 785 13 HOH HOH . 
H 7 HOH A 86 786 150 HOH HOH . 
H 7 HOH A 87 787 259 HOH HOH . 
H 7 HOH A 88 788 49 HOH HOH . 
H 7 HOH A 89 789 183 HOH HOH . 
H 7 HOH A 90 790 72 HOH HOH . 
H 7 HOH A 91 791 28 HOH HOH . 
H 7 HOH A 92 792 238 HOH HOH . 
H 7 HOH A 93 793 17 HOH HOH . 
H 7 HOH A 94 794 151 HOH HOH . 
H 7 HOH A 95 795 92 HOH HOH . 
H 7 HOH A 96 796 141 HOH HOH . 
H 7 HOH A 97 797 39 HOH HOH . 
H 7 HOH A 98 798 41 HOH HOH . 
H 7 HOH A 99 799 189 HOH HOH . 
H 7 HOH A 100 800 211 HOH HOH . 
H 7 HOH A 101 801 159 HOH HOH . 
H 7 HOH A 102 802 46 HOH HOH . 
H 7 HOH A 103 803 192 HOH HOH . 
H 7 HOH A 104 804 103 HOH HOH . 
H 7 HOH A 105 805 260 HOH HOH . 
H 7 HOH A 106 806 26 HOH HOH . 
H 7 HOH A 107 807 149 HOH HOH . 
H 7 HOH A 108 808 236 HOH HOH . 
H 7 HOH A 109 809 160 HOH HOH . 
H 7 HOH A 110 810 177 HOH HOH . 
H 7 HOH A 111 811 1 HOH HOH . 
H 7 HOH A 112 812 184 HOH HOH . 
H 7 HOH A 113 813 194 HOH HOH . 
H 7 HOH A 114 814 89 HOH HOH . 
H 7 HOH A 115 815 253 HOH HOH . 
H 7 HOH A 116 816 131 HOH HOH . 
H 7 HOH A 117 817 241 HOH HOH . 
H 7 HOH A 118 818 167 HOH HOH . 
H 7 HOH A 119 819 224 HOH HOH . 
H 7 HOH A 120 820 256 HOH HOH . 
H 7 HOH A 121 821 128 HOH HOH . 
H 7 HOH A 122 822 14 HOH HOH . 
H 7 HOH A 123 823 157 HOH HOH . 
H 7 HOH A 124 824 82 HOH HOH . 
H 7 HOH A 125 825 191 HOH HOH . 
H 7 HOH A 126 826 40 HOH HOH . 
H 7 HOH A 127 827 61 HOH HOH . 
H 7 HOH A 128 828 101 HOH HOH . 
H 7 HOH A 129 829 213 HOH HOH . 
H 7 HOH A 130 830 249 HOH HOH . 
H 7 HOH A 131 831 48 HOH HOH . 
H 7 HOH A 132 832 254 HOH HOH . 
H 7 HOH A 133 833 139 HOH HOH . 
H 7 HOH A 134 834 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N NO3 . . . G 6 -8.068 -8.065 -8.067 0.3 51.97 ? N NO3 602 A 1 
HETATM 2 O O1 NO3 . . . G 6 -9.151 -7.633 -7.695 0.3 69.53 ? O1 NO3 602 A 1 
HETATM 3 O O2 NO3 . . . G 6 -7.503 -8.935 -7.419 0.3 68.07 ? O2 NO3 602 A 1 
HETATM 4 O O3 NO3 . . . G 6 -7.555 -7.633 -9.09 0.3 69.14 ? O3 NO3 602 A 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           90 
_model_server_stats.create_model_time_ms    78 
_model_server_stats.query_time_ms           1242 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           4 
#