data_7QA8
#
_model_server_result.job_id            HZYx45HFYeAM6FIvDD1pMA 
_model_server_result.datetime_utc      '2024-11-04 22:42:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7qa8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Y","auth_seq_id":502}' 
#
_entry.id    7QA8 
#
_exptl.entry_id    7QA8 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7QA8 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7QA8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 X N N 
? 3 Y N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 25 A ASN 25 1_555 E C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale2 A ND2 ASN 32 A ASN 32 1_555 F C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale3 B C PRO 10 K PRO 11 1_555 B N NLE 11 K NLE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 B C NLE 11 K NLE 12 1_555 B N TYR 12 K TYR 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale5 C C PRO 10 I PRO 11 1_555 C N NLE 11 I NLE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 C C NLE 11 I NLE 12 1_555 C N TYR 12 I TYR 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale7 D ND2 ASN 25 B ASN 25 1_555 Y C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale8 D ND2 ASN 32 B ASN 32 1_555 X C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7QA8 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NAG A 1 501 304 NAG NAG . 
F 3 NAG A 1 502 305 NAG NAG . 
G 4 Y01 A 1 503 2 Y01 Y01 . 
H 4 Y01 A 1 504 9 Y01 Y01 . 
I 4 Y01 A 1 505 10 Y01 Y01 . 
J 4 Y01 A 1 506 12 Y01 Y01 . 
K 4 Y01 A 1 507 3 Y01 Y01 . 
L 4 Y01 A 1 508 2 Y01 Y01 . 
M 4 Y01 A 1 509 2 Y01 Y01 . 
N 4 Y01 A 1 510 3 Y01 Y01 . 
O 4 Y01 A 1 511 3 Y01 Y01 . 
P 4 Y01 A 1 512 1 Y01 Y01 . 
Q 4 Y01 A 1 513 1 Y01 Y01 . 
R 4 Y01 A 1 514 2 Y01 Y01 . 
S 4 Y01 A 1 515 3 Y01 Y01 . 
T 4 Y01 A 1 516 9 Y01 Y01 . 
U 4 Y01 A 1 517 3 Y01 Y01 . 
V 4 Y01 A 1 518 7 Y01 Y01 . 
W 4 Y01 I 1 101 2 Y01 Y01 . 
X 3 NAG B 1 501 305 NAG NAG . 
Y 3 NAG B 1 502 306 NAG NAG . 
Z 4 Y01 B 1 503 1 Y01 Y01 . 
AA 4 Y01 B 1 504 6 Y01 Y01 . 
BA 4 Y01 B 1 505 8 Y01 Y01 . 
CA 4 Y01 B 1 506 11 Y01 Y01 . 
DA 4 Y01 B 1 507 13 Y01 Y01 . 
EA 4 Y01 B 1 508 14 Y01 Y01 . 
FA 4 Y01 B 1 509 15 Y01 Y01 . 
GA 4 Y01 B 1 510 1 Y01 Y01 . 
HA 4 Y01 B 1 511 4 Y01 Y01 . 
IA 4 Y01 B 1 512 5 Y01 Y01 . 
JA 4 Y01 B 1 513 14 Y01 Y01 . 
KA 4 Y01 B 1 514 17 Y01 Y01 . 
LA 4 Y01 B 1 515 18 Y01 Y01 . 
MA 4 Y01 B 1 516 19 Y01 Y01 . 
NA 4 Y01 B 1 517 1 Y01 Y01 . 
OA 4 Y01 B 1 518 1 Y01 Y01 . 
PA 4 Y01 B 1 519 8 Y01 Y01 . 
QA 5 HOH A 1 601 20 HOH HOH . 
QA 5 HOH A 2 602 83 HOH HOH . 
QA 5 HOH A 3 603 99 HOH HOH . 
QA 5 HOH A 4 604 108 HOH HOH . 
QA 5 HOH A 5 605 137 HOH HOH . 
QA 5 HOH A 6 606 90 HOH HOH . 
QA 5 HOH A 7 607 53 HOH HOH . 
QA 5 HOH A 8 608 87 HOH HOH . 
QA 5 HOH A 9 609 136 HOH HOH . 
QA 5 HOH A 10 610 17 HOH HOH . 
QA 5 HOH A 11 611 78 HOH HOH . 
QA 5 HOH A 12 612 1 HOH HOH . 
QA 5 HOH A 13 613 97 HOH HOH . 
QA 5 HOH A 14 614 96 HOH HOH . 
QA 5 HOH A 15 615 92 HOH HOH . 
QA 5 HOH A 16 616 37 HOH HOH . 
QA 5 HOH A 17 617 89 HOH HOH . 
QA 5 HOH A 18 618 77 HOH HOH . 
QA 5 HOH A 19 619 112 HOH HOH . 
QA 5 HOH A 20 620 61 HOH HOH . 
QA 5 HOH A 21 621 45 HOH HOH . 
QA 5 HOH A 22 622 73 HOH HOH . 
QA 5 HOH A 23 623 34 HOH HOH . 
QA 5 HOH A 24 624 8 HOH HOH . 
QA 5 HOH A 25 625 81 HOH HOH . 
QA 5 HOH A 26 626 105 HOH HOH . 
QA 5 HOH A 27 627 121 HOH HOH . 
QA 5 HOH A 28 628 135 HOH HOH . 
QA 5 HOH A 29 629 141 HOH HOH . 
QA 5 HOH A 30 630 133 HOH HOH . 
QA 5 HOH A 31 631 139 HOH HOH . 
QA 5 HOH A 32 632 107 HOH HOH . 
RA 5 HOH K 1 101 74 HOH HOH . 
RA 5 HOH K 2 102 10 HOH HOH . 
RA 5 HOH K 3 103 40 HOH HOH . 
RA 5 HOH K 4 104 114 HOH HOH . 
SA 5 HOH I 1 201 75 HOH HOH . 
SA 5 HOH I 2 202 11 HOH HOH . 
SA 5 HOH I 3 203 41 HOH HOH . 
SA 5 HOH I 4 204 115 HOH HOH . 
TA 5 HOH B 1 601 84 HOH HOH . 
TA 5 HOH B 2 602 88 HOH HOH . 
TA 5 HOH B 3 603 100 HOH HOH . 
TA 5 HOH B 4 604 106 HOH HOH . 
TA 5 HOH B 5 605 138 HOH HOH . 
TA 5 HOH B 6 606 91 HOH HOH . 
TA 5 HOH B 7 607 86 HOH HOH . 
TA 5 HOH B 8 608 35 HOH HOH . 
TA 5 HOH B 9 609 82 HOH HOH . 
TA 5 HOH B 10 610 18 HOH HOH . 
TA 5 HOH B 11 611 98 HOH HOH . 
TA 5 HOH B 12 612 103 HOH HOH . 
TA 5 HOH B 13 613 101 HOH HOH . 
TA 5 HOH B 14 614 3 HOH HOH . 
TA 5 HOH B 15 615 36 HOH HOH . 
TA 5 HOH B 16 616 113 HOH HOH . 
TA 5 HOH B 17 617 85 HOH HOH . 
TA 5 HOH B 18 618 111 HOH HOH . 
TA 5 HOH B 19 619 62 HOH HOH . 
TA 5 HOH B 20 620 76 HOH HOH . 
TA 5 HOH B 21 621 72 HOH HOH . 
TA 5 HOH B 22 622 33 HOH HOH . 
TA 5 HOH B 23 623 2 HOH HOH . 
TA 5 HOH B 24 624 79 HOH HOH . 
TA 5 HOH B 25 625 120 HOH HOH . 
TA 5 HOH B 26 626 134 HOH HOH . 
TA 5 HOH B 27 627 140 HOH HOH . 
TA 5 HOH B 28 628 142 HOH HOH . 
TA 5 HOH B 29 629 132 HOH HOH . 
TA 5 HOH B 30 630 122 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . Y 3 104.303 102.008 63.617 1 62.61 ? C1 NAG 502 B 1 
HETATM 2 C C2 NAG . . . Y 3 103.997 102.748 62.299 1 62.61 ? C2 NAG 502 B 1 
HETATM 3 C C3 NAG . . . Y 3 102.852 102.148 61.547 1 62.61 ? C3 NAG 502 B 1 
HETATM 4 C C4 NAG . . . Y 3 102.923 100.657 61.419 1 62.61 ? C4 NAG 502 B 1 
HETATM 5 C C5 NAG . . . Y 3 103.22 99.99 62.765 1 62.61 ? C5 NAG 502 B 1 
HETATM 6 C C6 NAG . . . Y 3 103.362 98.517 62.571 1 62.61 ? C6 NAG 502 B 1 
HETATM 7 C C7 NAG . . . Y 3 102.71 104.833 63.292 1 62.61 ? C7 NAG 502 B 1 
HETATM 8 C C8 NAG . . . Y 3 102.64 106.357 63.377 1 62.61 ? C8 NAG 502 B 1 
HETATM 9 N N2 NAG . . . Y 3 103.777 104.221 62.506 1 62.61 ? N2 NAG 502 B 1 
HETATM 10 O O3 NAG . . . Y 3 102.786 102.724 60.214 1 62.61 ? O3 NAG 502 B 1 
HETATM 11 O O4 NAG . . . Y 3 101.659 100.203 60.939 1 62.61 ? O4 NAG 502 B 1 
HETATM 12 O O5 NAG . . . Y 3 104.45 100.528 63.38 1 62.61 ? O5 NAG 502 B 1 
HETATM 13 O O6 NAG . . . Y 3 103.052 97.867 63.771 1 62.61 ? O6 NAG 502 B 1 
HETATM 14 O O7 NAG . . . Y 3 101.892 104.2 63.874 1 62.61 ? O7 NAG 502 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#