data_7QA8 # _model_server_result.job_id boy3hSRZIrnlzrmlhxNHJA _model_server_result.datetime_utc '2024-11-04 22:44:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qa8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":507}' # _entry.id 7QA8 # _exptl.entry_id 7QA8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 34 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QA8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QA8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N ? 4 V N N ? 4 W N N ? 4 Z N N ? 4 AA N N ? 4 BA N N ? 4 CA N N ? 4 DA N N ? 4 EA N N ? 4 FA N N ? 4 GA N N ? 4 HA N N ? 4 IA N N ? 4 JA N N ? 4 KA N N ? 4 LA N N ? 4 MA N N ? 4 NA N N ? 4 OA N N ? 4 PA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 25 A ASN 25 1_555 E C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 A ND2 ASN 32 A ASN 32 1_555 F C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 B C PRO 10 K PRO 11 1_555 B N NLE 11 K NLE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C NLE 11 K NLE 12 1_555 B N TYR 12 K TYR 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 C C PRO 10 I PRO 11 1_555 C N NLE 11 I NLE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 C C NLE 11 I NLE 12 1_555 C N TYR 12 I TYR 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 D ND2 ASN 25 B ASN 25 1_555 Y C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 D ND2 ASN 32 B ASN 32 1_555 X C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 427 n n CBA CAB Y01 sing 428 n n CBA CAN Y01 sing 429 n n CAN CAJ Y01 sing 430 n n CAJ CAO Y01 sing 431 n n CAO CBB Y01 sing 432 n n CBB CAC Y01 sing 433 n n CBB CBE Y01 sing 434 n n CBE CAP Y01 sing 435 n n CBE CBI Y01 sing 436 n n CAP CAQ Y01 sing 437 n n CAQ CBG Y01 sing 438 n n CBG CBI Y01 sing 439 n n CBG CBD Y01 sing 440 n n CBI CAE Y01 sing 441 n n CBI CAU Y01 sing 442 n n CAU CAS Y01 sing 443 n n CAS CBF Y01 sing 444 n n CBF CBD Y01 sing 445 n n CBF CBH Y01 sing 446 n n CBD CAK Y01 sing 447 n n CAK CAI Y01 sing 448 n n CAI CAZ Y01 doub 449 n n CAZ CAV Y01 sing 450 n n CAZ CBH Y01 sing 451 n n CAV CBC Y01 sing 452 n n CBH CAD Y01 sing 453 n n CBH CAT Y01 sing 454 n n CAT CAR Y01 sing 455 n n CAR CBC Y01 sing 456 n n CBC OAW Y01 sing 457 n n OAW CAY Y01 sing 458 n n CAY OAG Y01 doub 459 n n CAY CAM Y01 sing 460 n n CAM CAL Y01 sing 461 n n CAL CAX Y01 sing 462 n n CAX OAH Y01 sing 463 n n CAX OAF Y01 doub 464 n n CAA HAA1 Y01 sing 465 n n CAA HAA2 Y01 sing 466 n n CAA HAA3 Y01 sing 467 n n CBA HBA Y01 sing 468 n n CAB HAB1 Y01 sing 469 n n CAB HAB2 Y01 sing 470 n n CAB HAB3 Y01 sing 471 n n CAN HAN1 Y01 sing 472 n n CAN HAN2 Y01 sing 473 n n CAJ HAJ1 Y01 sing 474 n n CAJ HAJ2 Y01 sing 475 n n CAO HAO1 Y01 sing 476 n n CAO HAO2 Y01 sing 477 n n CBB HBB Y01 sing 478 n n CAC HAC1 Y01 sing 479 n n CAC HAC2 Y01 sing 480 n n CAC HAC3 Y01 sing 481 n n CBE HBE Y01 sing 482 n n CAP HAP1 Y01 sing 483 n n CAP HAP2 Y01 sing 484 n n CAQ HAQ1 Y01 sing 485 n n CAQ HAQ2 Y01 sing 486 n n CBG HBG Y01 sing 487 n n CBD HBD Y01 sing 488 n n CAE HAE1 Y01 sing 489 n n CAE HAE2 Y01 sing 490 n n CAE HAE3 Y01 sing 491 n n CAU HAU1 Y01 sing 492 n n CAU HAU2 Y01 sing 493 n n CAS HAS1 Y01 sing 494 n n CAS HAS2 Y01 sing 495 n n CBF HBF Y01 sing 496 n n CAK HAK1 Y01 sing 497 n n CAK HAK2 Y01 sing 498 n n CAI HAI Y01 sing 499 n n CAV HAV1 Y01 sing 500 n n CAV HAV2 Y01 sing 501 n n CBC HBC Y01 sing 502 n n CAD HAD1 Y01 sing 503 n n CAD HAD2 Y01 sing 504 n n CAD HAD3 Y01 sing 505 n n CAT HAT1 Y01 sing 506 n n CAT HAT2 Y01 sing 507 n n CAR HAR1 Y01 sing 508 n n CAR HAR2 Y01 sing 509 n n CAM HAM1 Y01 sing 510 n n CAM HAM2 Y01 sing 511 n n CAL HAL1 Y01 sing 512 n n CAL HAL2 Y01 sing 513 n n OAH HAH Y01 sing 514 n n # _atom_sites.entry_id 7QA8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 501 304 NAG NAG . F 3 NAG A 1 502 305 NAG NAG . G 4 Y01 A 1 503 2 Y01 Y01 . H 4 Y01 A 1 504 9 Y01 Y01 . I 4 Y01 A 1 505 10 Y01 Y01 . J 4 Y01 A 1 506 12 Y01 Y01 . K 4 Y01 A 1 507 3 Y01 Y01 . L 4 Y01 A 1 508 2 Y01 Y01 . M 4 Y01 A 1 509 2 Y01 Y01 . N 4 Y01 A 1 510 3 Y01 Y01 . O 4 Y01 A 1 511 3 Y01 Y01 . P 4 Y01 A 1 512 1 Y01 Y01 . Q 4 Y01 A 1 513 1 Y01 Y01 . R 4 Y01 A 1 514 2 Y01 Y01 . S 4 Y01 A 1 515 3 Y01 Y01 . T 4 Y01 A 1 516 9 Y01 Y01 . U 4 Y01 A 1 517 3 Y01 Y01 . V 4 Y01 A 1 518 7 Y01 Y01 . W 4 Y01 I 1 101 2 Y01 Y01 . X 3 NAG B 1 501 305 NAG NAG . Y 3 NAG B 1 502 306 NAG NAG . Z 4 Y01 B 1 503 1 Y01 Y01 . AA 4 Y01 B 1 504 6 Y01 Y01 . BA 4 Y01 B 1 505 8 Y01 Y01 . CA 4 Y01 B 1 506 11 Y01 Y01 . DA 4 Y01 B 1 507 13 Y01 Y01 . EA 4 Y01 B 1 508 14 Y01 Y01 . FA 4 Y01 B 1 509 15 Y01 Y01 . GA 4 Y01 B 1 510 1 Y01 Y01 . HA 4 Y01 B 1 511 4 Y01 Y01 . IA 4 Y01 B 1 512 5 Y01 Y01 . JA 4 Y01 B 1 513 14 Y01 Y01 . KA 4 Y01 B 1 514 17 Y01 Y01 . LA 4 Y01 B 1 515 18 Y01 Y01 . MA 4 Y01 B 1 516 19 Y01 Y01 . NA 4 Y01 B 1 517 1 Y01 Y01 . OA 4 Y01 B 1 518 1 Y01 Y01 . PA 4 Y01 B 1 519 8 Y01 Y01 . QA 5 HOH A 1 601 20 HOH HOH . QA 5 HOH A 2 602 83 HOH HOH . QA 5 HOH A 3 603 99 HOH HOH . QA 5 HOH A 4 604 108 HOH HOH . QA 5 HOH A 5 605 137 HOH HOH . QA 5 HOH A 6 606 90 HOH HOH . QA 5 HOH A 7 607 53 HOH HOH . QA 5 HOH A 8 608 87 HOH HOH . QA 5 HOH A 9 609 136 HOH HOH . QA 5 HOH A 10 610 17 HOH HOH . QA 5 HOH A 11 611 78 HOH HOH . QA 5 HOH A 12 612 1 HOH HOH . QA 5 HOH A 13 613 97 HOH HOH . QA 5 HOH A 14 614 96 HOH HOH . QA 5 HOH A 15 615 92 HOH HOH . QA 5 HOH A 16 616 37 HOH HOH . QA 5 HOH A 17 617 89 HOH HOH . QA 5 HOH A 18 618 77 HOH HOH . QA 5 HOH A 19 619 112 HOH HOH . QA 5 HOH A 20 620 61 HOH HOH . QA 5 HOH A 21 621 45 HOH HOH . QA 5 HOH A 22 622 73 HOH HOH . QA 5 HOH A 23 623 34 HOH HOH . QA 5 HOH A 24 624 8 HOH HOH . QA 5 HOH A 25 625 81 HOH HOH . QA 5 HOH A 26 626 105 HOH HOH . QA 5 HOH A 27 627 121 HOH HOH . QA 5 HOH A 28 628 135 HOH HOH . QA 5 HOH A 29 629 141 HOH HOH . QA 5 HOH A 30 630 133 HOH HOH . QA 5 HOH A 31 631 139 HOH HOH . QA 5 HOH A 32 632 107 HOH HOH . RA 5 HOH K 1 101 74 HOH HOH . RA 5 HOH K 2 102 10 HOH HOH . RA 5 HOH K 3 103 40 HOH HOH . RA 5 HOH K 4 104 114 HOH HOH . SA 5 HOH I 1 201 75 HOH HOH . SA 5 HOH I 2 202 11 HOH HOH . SA 5 HOH I 3 203 41 HOH HOH . SA 5 HOH I 4 204 115 HOH HOH . TA 5 HOH B 1 601 84 HOH HOH . TA 5 HOH B 2 602 88 HOH HOH . TA 5 HOH B 3 603 100 HOH HOH . TA 5 HOH B 4 604 106 HOH HOH . TA 5 HOH B 5 605 138 HOH HOH . TA 5 HOH B 6 606 91 HOH HOH . TA 5 HOH B 7 607 86 HOH HOH . TA 5 HOH B 8 608 35 HOH HOH . TA 5 HOH B 9 609 82 HOH HOH . TA 5 HOH B 10 610 18 HOH HOH . TA 5 HOH B 11 611 98 HOH HOH . TA 5 HOH B 12 612 103 HOH HOH . TA 5 HOH B 13 613 101 HOH HOH . TA 5 HOH B 14 614 3 HOH HOH . TA 5 HOH B 15 615 36 HOH HOH . TA 5 HOH B 16 616 113 HOH HOH . TA 5 HOH B 17 617 85 HOH HOH . TA 5 HOH B 18 618 111 HOH HOH . TA 5 HOH B 19 619 62 HOH HOH . TA 5 HOH B 20 620 76 HOH HOH . TA 5 HOH B 21 621 72 HOH HOH . TA 5 HOH B 22 622 33 HOH HOH . TA 5 HOH B 23 623 2 HOH HOH . TA 5 HOH B 24 624 79 HOH HOH . TA 5 HOH B 25 625 120 HOH HOH . TA 5 HOH B 26 626 134 HOH HOH . TA 5 HOH B 27 627 140 HOH HOH . TA 5 HOH B 28 628 142 HOH HOH . TA 5 HOH B 29 629 132 HOH HOH . TA 5 HOH B 30 630 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . DA 4 94.911 95.418 112.005 1 68.43 ? CAA Y01 507 B 1 HETATM 2 C CBA Y01 . . . DA 4 95.886 94.594 112.831 1 68.43 ? CBA Y01 507 B 1 HETATM 3 C CAB Y01 . . . DA 4 95.134 93.643 113.749 1 68.43 ? CAB Y01 507 B 1 HETATM 4 C CAN Y01 . . . DA 4 96.846 95.488 113.62 1 68.43 ? CAN Y01 507 B 1 HETATM 5 C CAJ Y01 . . . DA 4 96.24 96.217 114.791 1 68.43 ? CAJ Y01 507 B 1 HETATM 6 C CAO Y01 . . . DA 4 97.206 97.172 115.47 1 68.43 ? CAO Y01 507 B 1 HETATM 7 C CBB Y01 . . . DA 4 98.436 96.523 116.129 1 68.43 ? CBB Y01 507 B 1 HETATM 8 C CAC Y01 . . . DA 4 99.711 97.035 115.46 1 68.43 ? CAC Y01 507 B 1 HETATM 9 C CBE Y01 . . . DA 4 98.404 96.753 117.663 1 68.43 ? CBE Y01 507 B 1 HETATM 10 C CAP Y01 . . . DA 4 97.016 96.39 118.272 1 68.43 ? CAP Y01 507 B 1 HETATM 11 C CAQ Y01 . . . DA 4 97.268 95.731 119.633 1 68.43 ? CAQ Y01 507 B 1 HETATM 12 C CBG Y01 . . . DA 4 98.692 96.144 119.957 1 68.43 ? CBG Y01 507 B 1 HETATM 13 C CBI Y01 . . . DA 4 99.432 96.027 118.605 1 68.43 ? CBI Y01 507 B 1 HETATM 14 C CAE Y01 . . . DA 4 99.605 94.562 118.165 1 68.43 ? CAE Y01 507 B 1 HETATM 15 C CAU Y01 . . . DA 4 100.798 96.704 118.8 1 68.43 ? CAU Y01 507 B 1 HETATM 16 C CAS Y01 . . . DA 4 101.576 96.106 119.98 1 68.43 ? CAS Y01 507 B 1 HETATM 17 C CBF Y01 . . . DA 4 100.791 96.136 121.301 1 68.43 ? CBF Y01 507 B 1 HETATM 18 C CBD Y01 . . . DA 4 99.399 95.497 121.143 1 68.43 ? CBD Y01 507 B 1 HETATM 19 C CAK Y01 . . . DA 4 98.579 95.689 122.417 1 68.43 ? CAK Y01 507 B 1 HETATM 20 C CAI Y01 . . . DA 4 99.379 95.518 123.668 1 68.43 ? CAI Y01 507 B 1 HETATM 21 C CAZ Y01 . . . DA 4 100.699 95.437 123.728 1 68.43 ? CAZ Y01 507 B 1 HETATM 22 C CAV Y01 . . . DA 4 101.395 95.226 125.057 1 68.43 ? CAV Y01 507 B 1 HETATM 23 C CBH Y01 . . . DA 4 101.6 95.558 122.501 1 68.43 ? CBH Y01 507 B 1 HETATM 24 C CAD Y01 . . . DA 4 102.169 94.163 122.19 1 68.43 ? CAD Y01 507 B 1 HETATM 25 C CAT Y01 . . . DA 4 102.756 96.531 122.827 1 68.43 ? CAT Y01 507 B 1 HETATM 26 C CAR Y01 . . . DA 4 103.449 96.254 124.162 1 68.43 ? CAR Y01 507 B 1 HETATM 27 C CBC Y01 . . . DA 4 102.462 96.27 125.299 1 68.43 ? CBC Y01 507 B 1 HETATM 28 O OAW Y01 . . . DA 4 103.067 95.954 126.594 1 68.43 ? OAW Y01 507 B 1 HETATM 29 C CAY Y01 . . . DA 4 103.809 96.887 127.21 1 68.43 ? CAY Y01 507 B 1 HETATM 30 O OAG Y01 . . . DA 4 104.829 97.331 126.767 1 68.43 ? OAG Y01 507 B 1 HETATM 31 C CAM Y01 . . . DA 4 103.215 97.301 128.537 1 68.43 ? CAM Y01 507 B 1 HETATM 32 C CAL Y01 . . . DA 4 101.88 96.693 128.932 1 68.43 ? CAL Y01 507 B 1 HETATM 33 C CAX Y01 . . . DA 4 100.678 97.259 128.195 1 68.43 ? CAX Y01 507 B 1 HETATM 34 O OAH Y01 . . . DA 4 99.577 96.693 128.341 1 68.43 ? OAH Y01 507 B 1 HETATM 35 O OAF Y01 . . . DA 4 100.844 98.271 127.484 1 68.43 ? OAF Y01 507 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #