data_7QAK
#
_model_server_result.job_id            6lADwc4UeK_EIuX8aG04Qw 
_model_server_result.datetime_utc      '2024-11-24 01:00:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7qak 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    7QAK 
#
_exptl.entry_id    7QAK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7QAK 
_cell.length_a            78.453 
_cell.length_b            112.71 
_cell.length_c            226.704 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7QAK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 O N N 
? 2 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 69 A CYS 69 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 A SG CYS 257 A CYS 257 1_555 A SG CYS 272 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 409 A CYS 409 1_555 A SG CYS 529 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 B SG CYS 69 B CYS 69 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 B SG CYS 257 B CYS 257 1_555 B SG CYS 272 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf6 B SG CYS 409 B CYS 409 1_555 B SG CYS 529 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
covale ? covale1 A ND2 ASN 350 A ASN 350 1_555 C C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale2 A ND2 ASN 464 A ASN 464 1_555 D C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? 
covale ? covale3 B ND2 ASN 350 B ASN 350 1_555 O C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? 
covale ? covale4 B ND2 ASN 464 B ASN 464 1_555 P C1 NAG . B NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 305 n n 
C1 O1 NAG sing 306 n n 
C1 O5 NAG sing 307 n n 
C1 H1 NAG sing 308 n n 
C2 C3 NAG sing 309 n n 
C2 N2 NAG sing 310 n n 
C2 H2 NAG sing 311 n n 
C3 C4 NAG sing 312 n n 
C3 O3 NAG sing 313 n n 
C3 H3 NAG sing 314 n n 
C4 C5 NAG sing 315 n n 
C4 O4 NAG sing 316 n n 
C4 H4 NAG sing 317 n n 
C5 C6 NAG sing 318 n n 
C5 O5 NAG sing 319 n n 
C5 H5 NAG sing 320 n n 
C6 O6 NAG sing 321 n n 
C6 H61 NAG sing 322 n n 
C6 H62 NAG sing 323 n n 
C7 C8 NAG sing 324 n n 
C7 N2 NAG sing 325 n n 
C7 O7 NAG doub 326 n n 
C8 H81 NAG sing 327 n n 
C8 H82 NAG sing 328 n n 
C8 H83 NAG sing 329 n n 
N2 HN2 NAG sing 330 n n 
O1 HO1 NAG sing 331 n n 
O3 HO3 NAG sing 332 n n 
O4 HO4 NAG sing 333 n n 
O6 HO6 NAG sing 334 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7QAK 
_atom_sites.fract_transf_matrix[1][1]    0.012746 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008872 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004411 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 601 544 NAG NAG . 
D 2 NAG A 1 602 544 NAG NAG . 
E 3 5IK A 1 603 1 5IK FE1 . 
F 4 EDO A 1 604 1 EDO EDO . 
G 5 PG0 A 1 605 1 PG0 P2G . 
H 5 PG0 A 1 606 2 PG0 P2G . 
I 5 PG0 A 1 607 3 PG0 P2G . 
J 5 PG0 A 1 608 4 PG0 P2G . 
K 5 PG0 A 1 609 5 PG0 P2G . 
L 5 PG0 A 1 610 9 PG0 P2G . 
M 5 PG0 A 1 611 1 PG0 P2G . 
N 5 PG0 A 1 612 2 PG0 P2G . 
O 2 NAG B 1 601 544 NAG NAG . 
P 2 NAG B 1 602 544 NAG NAG . 
Q 3 5IK B 1 603 2 5IK FE1 . 
R 5 PG0 B 1 604 6 PG0 P2G . 
S 5 PG0 B 1 605 7 PG0 P2G . 
T 5 PG0 B 1 606 8 PG0 P2G . 
U 5 PG0 B 1 607 3 PG0 P2G . 
V 6 TOE B 1 608 9 TOE P3G . 
W 7 P15 B 1 609 1 P15 P6G . 
X 8 HOH A 1 701 242 HOH HOH . 
X 8 HOH A 2 702 236 HOH HOH . 
X 8 HOH A 3 703 118 HOH HOH . 
X 8 HOH A 4 704 37 HOH HOH . 
X 8 HOH A 5 705 155 HOH HOH . 
X 8 HOH A 6 706 13 HOH HOH . 
X 8 HOH A 7 707 65 HOH HOH . 
X 8 HOH A 8 708 221 HOH HOH . 
X 8 HOH A 9 709 235 HOH HOH . 
X 8 HOH A 10 710 154 HOH HOH . 
X 8 HOH A 11 711 230 HOH HOH . 
X 8 HOH A 12 712 158 HOH HOH . 
X 8 HOH A 13 713 6 HOH HOH . 
X 8 HOH A 14 714 23 HOH HOH . 
X 8 HOH A 15 715 147 HOH HOH . 
X 8 HOH A 16 716 95 HOH HOH . 
X 8 HOH A 17 717 85 HOH HOH . 
X 8 HOH A 18 718 152 HOH HOH . 
X 8 HOH A 19 719 35 HOH HOH . 
X 8 HOH A 20 720 159 HOH HOH . 
X 8 HOH A 21 721 83 HOH HOH . 
X 8 HOH A 22 722 86 HOH HOH . 
X 8 HOH A 23 723 218 HOH HOH . 
X 8 HOH A 24 724 71 HOH HOH . 
X 8 HOH A 25 725 39 HOH HOH . 
X 8 HOH A 26 726 17 HOH HOH . 
X 8 HOH A 27 727 40 HOH HOH . 
X 8 HOH A 28 728 74 HOH HOH . 
X 8 HOH A 29 729 4 HOH HOH . 
X 8 HOH A 30 730 171 HOH HOH . 
X 8 HOH A 31 731 26 HOH HOH . 
X 8 HOH A 32 732 32 HOH HOH . 
X 8 HOH A 33 733 79 HOH HOH . 
X 8 HOH A 34 734 238 HOH HOH . 
X 8 HOH A 35 735 89 HOH HOH . 
X 8 HOH A 36 736 19 HOH HOH . 
X 8 HOH A 37 737 232 HOH HOH . 
X 8 HOH A 38 738 28 HOH HOH . 
X 8 HOH A 39 739 22 HOH HOH . 
X 8 HOH A 40 740 132 HOH HOH . 
X 8 HOH A 41 741 52 HOH HOH . 
X 8 HOH A 42 742 64 HOH HOH . 
X 8 HOH A 43 743 60 HOH HOH . 
X 8 HOH A 44 744 93 HOH HOH . 
X 8 HOH A 45 745 46 HOH HOH . 
X 8 HOH A 46 746 106 HOH HOH . 
X 8 HOH A 47 747 217 HOH HOH . 
X 8 HOH A 48 748 42 HOH HOH . 
X 8 HOH A 49 749 8 HOH HOH . 
X 8 HOH A 50 750 216 HOH HOH . 
X 8 HOH A 51 751 123 HOH HOH . 
X 8 HOH A 52 752 9 HOH HOH . 
X 8 HOH A 53 753 231 HOH HOH . 
X 8 HOH A 54 754 239 HOH HOH . 
X 8 HOH A 55 755 76 HOH HOH . 
X 8 HOH A 56 756 163 HOH HOH . 
X 8 HOH A 57 757 126 HOH HOH . 
X 8 HOH A 58 758 241 HOH HOH . 
X 8 HOH A 59 759 140 HOH HOH . 
X 8 HOH A 60 760 229 HOH HOH . 
X 8 HOH A 61 761 62 HOH HOH . 
X 8 HOH A 62 762 104 HOH HOH . 
X 8 HOH A 63 763 88 HOH HOH . 
X 8 HOH A 64 764 142 HOH HOH . 
X 8 HOH A 65 765 102 HOH HOH . 
X 8 HOH A 66 766 157 HOH HOH . 
X 8 HOH A 67 767 77 HOH HOH . 
X 8 HOH A 68 768 21 HOH HOH . 
X 8 HOH A 69 769 87 HOH HOH . 
X 8 HOH A 70 770 148 HOH HOH . 
X 8 HOH A 71 771 233 HOH HOH . 
X 8 HOH A 72 772 176 HOH HOH . 
X 8 HOH A 73 773 15 HOH HOH . 
X 8 HOH A 74 774 234 HOH HOH . 
X 8 HOH A 75 775 175 HOH HOH . 
X 8 HOH A 76 776 237 HOH HOH . 
X 8 HOH A 77 777 207 HOH HOH . 
Y 8 HOH B 1 701 203 HOH HOH . 
Y 8 HOH B 2 702 181 HOH HOH . 
Y 8 HOH B 3 703 25 HOH HOH . 
Y 8 HOH B 4 704 211 HOH HOH . 
Y 8 HOH B 5 705 33 HOH HOH . 
Y 8 HOH B 6 706 201 HOH HOH . 
Y 8 HOH B 7 707 182 HOH HOH . 
Y 8 HOH B 8 708 94 HOH HOH . 
Y 8 HOH B 9 709 213 HOH HOH . 
Y 8 HOH B 10 710 20 HOH HOH . 
Y 8 HOH B 11 711 198 HOH HOH . 
Y 8 HOH B 12 712 58 HOH HOH . 
Y 8 HOH B 13 713 5 HOH HOH . 
Y 8 HOH B 14 714 36 HOH HOH . 
Y 8 HOH B 15 715 133 HOH HOH . 
Y 8 HOH B 16 716 38 HOH HOH . 
Y 8 HOH B 17 717 134 HOH HOH . 
Y 8 HOH B 18 718 12 HOH HOH . 
Y 8 HOH B 19 719 31 HOH HOH . 
Y 8 HOH B 20 720 179 HOH HOH . 
Y 8 HOH B 21 721 59 HOH HOH . 
Y 8 HOH B 22 722 222 HOH HOH . 
Y 8 HOH B 23 723 135 HOH HOH . 
Y 8 HOH B 24 724 114 HOH HOH . 
Y 8 HOH B 25 725 14 HOH HOH . 
Y 8 HOH B 26 726 129 HOH HOH . 
Y 8 HOH B 27 727 183 HOH HOH . 
Y 8 HOH B 28 728 10 HOH HOH . 
Y 8 HOH B 29 729 66 HOH HOH . 
Y 8 HOH B 30 730 11 HOH HOH . 
Y 8 HOH B 31 731 27 HOH HOH . 
Y 8 HOH B 32 732 24 HOH HOH . 
Y 8 HOH B 33 733 56 HOH HOH . 
Y 8 HOH B 34 734 144 HOH HOH . 
Y 8 HOH B 35 735 215 HOH HOH . 
Y 8 HOH B 36 736 107 HOH HOH . 
Y 8 HOH B 37 737 187 HOH HOH . 
Y 8 HOH B 38 738 101 HOH HOH . 
Y 8 HOH B 39 739 193 HOH HOH . 
Y 8 HOH B 40 740 192 HOH HOH . 
Y 8 HOH B 41 741 184 HOH HOH . 
Y 8 HOH B 42 742 208 HOH HOH . 
Y 8 HOH B 43 743 91 HOH HOH . 
Y 8 HOH B 44 744 78 HOH HOH . 
Y 8 HOH B 45 745 240 HOH HOH . 
Y 8 HOH B 46 746 111 HOH HOH . 
Y 8 HOH B 47 747 72 HOH HOH . 
Y 8 HOH B 48 748 191 HOH HOH . 
Y 8 HOH B 49 749 185 HOH HOH . 
Y 8 HOH B 50 750 113 HOH HOH . 
Y 8 HOH B 51 751 223 HOH HOH . 
Y 8 HOH B 52 752 188 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 2 24.012 35.248 -0.431 1 78.39 ? C1 NAG 601 A 1 
HETATM 2 C C2 NAG . . . C 2 24.244 35.534 -1.927 1 89.84 ? C2 NAG 601 A 1 
HETATM 3 C C3 NAG . . . C 2 25.651 35.102 -2.339 1 94.45 ? C3 NAG 601 A 1 
HETATM 4 C C4 NAG . . . C 2 26.693 35.736 -1.43 1 95.31 ? C4 NAG 601 A 1 
HETATM 5 C C5 NAG . . . C 2 26.379 35.414 0.025 1 92.36 ? C5 NAG 601 A 1 
HETATM 6 C C6 NAG . . . C 2 27.285 36.144 0.985 1 94.26 ? C6 NAG 601 A 1 
HETATM 7 C C7 NAG . . . C 2 22.19 35.519 -3.286 1 96.66 ? C7 NAG 601 A 1 
HETATM 8 C C8 NAG . . . C 2 21.285 34.693 -4.149 1 100.18 ? C8 NAG 601 A 1 
HETATM 9 N N2 NAG . . . C 2 23.248 34.884 -2.768 1 93.7 ? N2 NAG 601 A 1 
HETATM 10 O O3 NAG . . . C 2 25.911 35.479 -3.686 1 97.36 ? O3 NAG 601 A 1 
HETATM 11 O O4 NAG . . . C 2 27.987 35.243 -1.756 1 98.85 ? O4 NAG 601 A 1 
HETATM 12 O O5 NAG . . . C 2 25.047 35.843 0.336 1 86.08 ? O5 NAG 601 A 1 
HETATM 13 O O6 NAG . . . C 2 26.864 37.493 1.133 1 95.52 ? O6 NAG 601 A 1 
HETATM 14 O O7 NAG . . . C 2 21.968 36.705 -3.061 1 97.2 ? O7 NAG 601 A 1 
#
_model_server_stats.io_time_ms              34 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#