data_7QAK # _model_server_result.job_id Cy8CxMCtzo7LAlhaaqZY9g _model_server_result.datetime_utc '2024-11-14 06:03:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":603}' # _entry.id 7QAK # _exptl.entry_id 7QAK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 415.481 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(hydroxymethyl)-7-[[4-[[methyl-(phenylmethyl)amino]methyl]phenyl]methoxy]chromen-2-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QAK _cell.length_a 78.453 _cell.length_b 112.71 _cell.length_c 226.704 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 69 A CYS 69 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 257 A CYS 257 1_555 A SG CYS 272 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 409 A CYS 409 1_555 A SG CYS 529 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 69 B CYS 69 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 B SG CYS 257 B CYS 257 1_555 B SG CYS 272 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 B SG CYS 409 B CYS 409 1_555 B SG CYS 529 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 350 A ASN 350 1_555 C C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 464 A ASN 464 1_555 D C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale3 B ND2 ASN 350 B ASN 350 1_555 O C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? covale ? covale4 B ND2 ASN 464 B ASN 464 1_555 P C1 NAG . B NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C26 H25 N O4' _chem_comp.formula_weight 415.481 _chem_comp.id 5IK _chem_comp.mon_nstd_flag . _chem_comp.name 4-(hydroxymethyl)-7-[[4-[[methyl-(phenylmethyl)amino]methyl]phenyl]methoxy]chromen-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAB CBB 5IK doub 1 n n CBB CAO 5IK sing 2 n n CBB OAV 5IK sing 3 n n CAO CBA 5IK doub 4 n n OAC CAQ 5IK sing 5 n n OAV CBC 5IK sing 6 n n CBA CAQ 5IK sing 7 n n CBA CBD 5IK sing 8 n n CBC CBD 5IK doub 9 n y CBC CAP 5IK sing 10 n y CBD CAN 5IK sing 11 n y CAP CAZ 5IK doub 12 n y CAN CAM 5IK doub 13 n y CAZ CAM 5IK sing 14 n y CAZ OAU 5IK sing 15 n n CAR OAU 5IK sing 16 n n CAR CAW 5IK sing 17 n n CAW CAJ 5IK doub 18 n y CAW CAI 5IK sing 19 n y CAJ CAL 5IK sing 20 n y CAI CAK 5IK doub 21 n y CAL CAY 5IK doub 22 n y CAK CAY 5IK sing 23 n y CAA NBE 5IK sing 24 n n CAY CAT 5IK sing 25 n n CAT NBE 5IK sing 26 n n NBE CAS 5IK sing 27 n n CAS CAX 5IK sing 28 n n CAH CAX 5IK doub 29 n y CAH CAF 5IK sing 30 n y CAX CAG 5IK sing 31 n y CAF CAD 5IK doub 32 n y CAG CAE 5IK doub 33 n y CAD CAE 5IK sing 34 n y CAG H1 5IK sing 35 n n CAE H2 5IK sing 36 n n CAD H3 5IK sing 37 n n CAF H4 5IK sing 38 n n CAH H5 5IK sing 39 n n CAS H6 5IK sing 40 n n CAS H7 5IK sing 41 n n CAA H9 5IK sing 42 n n CAA H10 5IK sing 43 n n CAA H11 5IK sing 44 n n CAT H12 5IK sing 45 n n CAT H13 5IK sing 46 n n CAL H14 5IK sing 47 n n CAJ H15 5IK sing 48 n n CAK H16 5IK sing 49 n n CAI H17 5IK sing 50 n n CAR H18 5IK sing 51 n n CAR H19 5IK sing 52 n n CAP H20 5IK sing 53 n n CAM H21 5IK sing 54 n n CAN H22 5IK sing 55 n n CAO H23 5IK sing 56 n n CAQ H24 5IK sing 57 n n CAQ H25 5IK sing 58 n n OAC H26 5IK sing 59 n n # _atom_sites.entry_id 7QAK _atom_sites.fract_transf_matrix[1][1] 0.012746 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008872 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004411 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 601 544 NAG NAG . D 2 NAG A 1 602 544 NAG NAG . E 3 5IK A 1 603 1 5IK FE1 . F 4 EDO A 1 604 1 EDO EDO . G 5 PG0 A 1 605 1 PG0 P2G . H 5 PG0 A 1 606 2 PG0 P2G . I 5 PG0 A 1 607 3 PG0 P2G . J 5 PG0 A 1 608 4 PG0 P2G . K 5 PG0 A 1 609 5 PG0 P2G . L 5 PG0 A 1 610 9 PG0 P2G . M 5 PG0 A 1 611 1 PG0 P2G . N 5 PG0 A 1 612 2 PG0 P2G . O 2 NAG B 1 601 544 NAG NAG . P 2 NAG B 1 602 544 NAG NAG . Q 3 5IK B 1 603 2 5IK FE1 . R 5 PG0 B 1 604 6 PG0 P2G . S 5 PG0 B 1 605 7 PG0 P2G . T 5 PG0 B 1 606 8 PG0 P2G . U 5 PG0 B 1 607 3 PG0 P2G . V 6 TOE B 1 608 9 TOE P3G . W 7 P15 B 1 609 1 P15 P6G . X 8 HOH A 1 701 242 HOH HOH . X 8 HOH A 2 702 236 HOH HOH . X 8 HOH A 3 703 118 HOH HOH . X 8 HOH A 4 704 37 HOH HOH . X 8 HOH A 5 705 155 HOH HOH . X 8 HOH A 6 706 13 HOH HOH . X 8 HOH A 7 707 65 HOH HOH . X 8 HOH A 8 708 221 HOH HOH . X 8 HOH A 9 709 235 HOH HOH . X 8 HOH A 10 710 154 HOH HOH . X 8 HOH A 11 711 230 HOH HOH . X 8 HOH A 12 712 158 HOH HOH . X 8 HOH A 13 713 6 HOH HOH . X 8 HOH A 14 714 23 HOH HOH . X 8 HOH A 15 715 147 HOH HOH . X 8 HOH A 16 716 95 HOH HOH . X 8 HOH A 17 717 85 HOH HOH . X 8 HOH A 18 718 152 HOH HOH . X 8 HOH A 19 719 35 HOH HOH . X 8 HOH A 20 720 159 HOH HOH . X 8 HOH A 21 721 83 HOH HOH . X 8 HOH A 22 722 86 HOH HOH . X 8 HOH A 23 723 218 HOH HOH . X 8 HOH A 24 724 71 HOH HOH . X 8 HOH A 25 725 39 HOH HOH . X 8 HOH A 26 726 17 HOH HOH . X 8 HOH A 27 727 40 HOH HOH . X 8 HOH A 28 728 74 HOH HOH . X 8 HOH A 29 729 4 HOH HOH . X 8 HOH A 30 730 171 HOH HOH . X 8 HOH A 31 731 26 HOH HOH . X 8 HOH A 32 732 32 HOH HOH . X 8 HOH A 33 733 79 HOH HOH . X 8 HOH A 34 734 238 HOH HOH . X 8 HOH A 35 735 89 HOH HOH . X 8 HOH A 36 736 19 HOH HOH . X 8 HOH A 37 737 232 HOH HOH . X 8 HOH A 38 738 28 HOH HOH . X 8 HOH A 39 739 22 HOH HOH . X 8 HOH A 40 740 132 HOH HOH . X 8 HOH A 41 741 52 HOH HOH . X 8 HOH A 42 742 64 HOH HOH . X 8 HOH A 43 743 60 HOH HOH . X 8 HOH A 44 744 93 HOH HOH . X 8 HOH A 45 745 46 HOH HOH . X 8 HOH A 46 746 106 HOH HOH . X 8 HOH A 47 747 217 HOH HOH . X 8 HOH A 48 748 42 HOH HOH . X 8 HOH A 49 749 8 HOH HOH . X 8 HOH A 50 750 216 HOH HOH . X 8 HOH A 51 751 123 HOH HOH . X 8 HOH A 52 752 9 HOH HOH . X 8 HOH A 53 753 231 HOH HOH . X 8 HOH A 54 754 239 HOH HOH . X 8 HOH A 55 755 76 HOH HOH . X 8 HOH A 56 756 163 HOH HOH . X 8 HOH A 57 757 126 HOH HOH . X 8 HOH A 58 758 241 HOH HOH . X 8 HOH A 59 759 140 HOH HOH . X 8 HOH A 60 760 229 HOH HOH . X 8 HOH A 61 761 62 HOH HOH . X 8 HOH A 62 762 104 HOH HOH . X 8 HOH A 63 763 88 HOH HOH . X 8 HOH A 64 764 142 HOH HOH . X 8 HOH A 65 765 102 HOH HOH . X 8 HOH A 66 766 157 HOH HOH . X 8 HOH A 67 767 77 HOH HOH . X 8 HOH A 68 768 21 HOH HOH . X 8 HOH A 69 769 87 HOH HOH . X 8 HOH A 70 770 148 HOH HOH . X 8 HOH A 71 771 233 HOH HOH . X 8 HOH A 72 772 176 HOH HOH . X 8 HOH A 73 773 15 HOH HOH . X 8 HOH A 74 774 234 HOH HOH . X 8 HOH A 75 775 175 HOH HOH . X 8 HOH A 76 776 237 HOH HOH . X 8 HOH A 77 777 207 HOH HOH . Y 8 HOH B 1 701 203 HOH HOH . Y 8 HOH B 2 702 181 HOH HOH . Y 8 HOH B 3 703 25 HOH HOH . Y 8 HOH B 4 704 211 HOH HOH . Y 8 HOH B 5 705 33 HOH HOH . Y 8 HOH B 6 706 201 HOH HOH . Y 8 HOH B 7 707 182 HOH HOH . Y 8 HOH B 8 708 94 HOH HOH . Y 8 HOH B 9 709 213 HOH HOH . Y 8 HOH B 10 710 20 HOH HOH . Y 8 HOH B 11 711 198 HOH HOH . Y 8 HOH B 12 712 58 HOH HOH . Y 8 HOH B 13 713 5 HOH HOH . Y 8 HOH B 14 714 36 HOH HOH . Y 8 HOH B 15 715 133 HOH HOH . Y 8 HOH B 16 716 38 HOH HOH . Y 8 HOH B 17 717 134 HOH HOH . Y 8 HOH B 18 718 12 HOH HOH . Y 8 HOH B 19 719 31 HOH HOH . Y 8 HOH B 20 720 179 HOH HOH . Y 8 HOH B 21 721 59 HOH HOH . Y 8 HOH B 22 722 222 HOH HOH . Y 8 HOH B 23 723 135 HOH HOH . Y 8 HOH B 24 724 114 HOH HOH . Y 8 HOH B 25 725 14 HOH HOH . Y 8 HOH B 26 726 129 HOH HOH . Y 8 HOH B 27 727 183 HOH HOH . Y 8 HOH B 28 728 10 HOH HOH . Y 8 HOH B 29 729 66 HOH HOH . Y 8 HOH B 30 730 11 HOH HOH . Y 8 HOH B 31 731 27 HOH HOH . Y 8 HOH B 32 732 24 HOH HOH . Y 8 HOH B 33 733 56 HOH HOH . Y 8 HOH B 34 734 144 HOH HOH . Y 8 HOH B 35 735 215 HOH HOH . Y 8 HOH B 36 736 107 HOH HOH . Y 8 HOH B 37 737 187 HOH HOH . Y 8 HOH B 38 738 101 HOH HOH . Y 8 HOH B 39 739 193 HOH HOH . Y 8 HOH B 40 740 192 HOH HOH . Y 8 HOH B 41 741 184 HOH HOH . Y 8 HOH B 42 742 208 HOH HOH . Y 8 HOH B 43 743 91 HOH HOH . Y 8 HOH B 44 744 78 HOH HOH . Y 8 HOH B 45 745 240 HOH HOH . Y 8 HOH B 46 746 111 HOH HOH . Y 8 HOH B 47 747 72 HOH HOH . Y 8 HOH B 48 748 191 HOH HOH . Y 8 HOH B 49 749 185 HOH HOH . Y 8 HOH B 50 750 113 HOH HOH . Y 8 HOH B 51 751 223 HOH HOH . Y 8 HOH B 52 752 188 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAG 5IK . . . Q 3 4.957 -2.53 -38.673 1 72.91 ? CAG 5IK 603 B 1 HETATM 2 C CAE 5IK . . . Q 3 5.056 -1.203 -39.065 1 72.37 ? CAE 5IK 603 B 1 HETATM 3 C CAD 5IK . . . Q 3 4.806 -0.185 -38.166 1 75.01 ? CAD 5IK 603 B 1 HETATM 4 C CAF 5IK . . . Q 3 4.453 -0.507 -36.859 1 74.92 ? CAF 5IK 603 B 1 HETATM 5 C CAH 5IK . . . Q 3 4.353 -1.838 -36.467 1 74.17 ? CAH 5IK 603 B 1 HETATM 6 C CAX 5IK . . . Q 3 4.6 -2.879 -37.378 1 74.98 ? CAX 5IK 603 B 1 HETATM 7 C CAS 5IK . . . Q 3 4.504 -4.316 -36.964 1 75.81 ? CAS 5IK 603 B 1 HETATM 8 N NBE 5IK . . . Q 3 5.856 -4.938 -36.784 1 76.51 ? NBE 5IK 603 B 1 HETATM 9 C CAA 5IK . . . Q 3 5.668 -6.412 -36.73 1 74.09 ? CAA 5IK 603 B 1 HETATM 10 C CAT 5IK . . . Q 3 6.595 -4.514 -35.527 1 77.54 ? CAT 5IK 603 B 1 HETATM 11 C CAY 5IK . . . Q 3 7.851 -5.316 -35.261 1 77.91 ? CAY 5IK 603 B 1 HETATM 12 C CAL 5IK . . . Q 3 8.01 -6.168 -34.163 1 78.79 ? CAL 5IK 603 B 1 HETATM 13 C CAJ 5IK . . . Q 3 9.179 -6.907 -33.953 1 78.38 ? CAJ 5IK 603 B 1 HETATM 14 C CAK 5IK . . . Q 3 8.943 -5.27 -36.125 1 78 ? CAK 5IK 603 B 1 HETATM 15 C CAI 5IK . . . Q 3 10.104 -6.01 -35.907 1 78.04 ? CAI 5IK 603 B 1 HETATM 16 C CAW 5IK . . . Q 3 10.28 -6.866 -34.816 1 77.73 ? CAW 5IK 603 B 1 HETATM 17 C CAR 5IK . . . Q 3 11.565 -7.671 -34.594 1 74.78 ? CAR 5IK 603 B 1 HETATM 18 O OAU 5IK . . . Q 3 12.727 -7.216 -35.291 1 73.13 ? OAU 5IK 603 B 1 HETATM 19 C CAZ 5IK . . . Q 3 13.077 -7.678 -36.559 1 69.09 ? CAZ 5IK 603 B 1 HETATM 20 C CAP 5IK . . . Q 3 14.242 -7.263 -37.197 1 67.42 ? CAP 5IK 603 B 1 HETATM 21 C CAM 5IK . . . Q 3 12.276 -8.601 -37.279 1 67.22 ? CAM 5IK 603 B 1 HETATM 22 C CAN 5IK . . . Q 3 12.641 -9.066 -38.547 1 63.38 ? CAN 5IK 603 B 1 HETATM 23 C CBD 5IK . . . Q 3 13.815 -8.657 -39.211 1 66.3 ? CBD 5IK 603 B 1 HETATM 24 C CBC 5IK . . . Q 3 14.589 -7.742 -38.476 1 68.33 ? CBC 5IK 603 B 1 HETATM 25 O OAV 5IK . . . Q 3 15.751 -7.245 -38.964 1 70.93 ? OAV 5IK 603 B 1 HETATM 26 C CBB 5IK . . . Q 3 16.198 -7.636 -40.203 1 70.82 ? CBB 5IK 603 B 1 HETATM 27 O OAB 5IK . . . Q 3 17.218 -7.073 -40.539 1 70.47 ? OAB 5IK 603 B 1 HETATM 28 C CAO 5IK . . . Q 3 15.458 -8.634 -40.972 1 71.44 ? CAO 5IK 603 B 1 HETATM 29 C CBA 5IK . . . Q 3 14.271 -9.099 -40.539 1 70.85 ? CBA 5IK 603 B 1 HETATM 30 C CAQ 5IK . . . Q 3 13.739 -10.366 -41.181 1 71.88 ? CAQ 5IK 603 B 1 HETATM 31 O OAC 5IK . . . Q 3 14.587 -10.77 -42.229 1 74.2 ? OAC 5IK 603 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #