data_7QAR # _model_server_result.job_id Ym5vM9TKfaHaIEJD5Ew_-A _model_server_result.datetime_utc '2024-10-27 16:29:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qar # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7QAR # _exptl.entry_id 7QAR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 214.136 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5S)-5-(dioxidanyl)-9-methyl-7H-purine-2,6,8-trione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QAR _cell.length_a 79.79 _cell.length_b 96.03 _cell.length_c 105.21 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QAR _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 79.79 96.03 0 3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 79.79 0 105.21 4 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 96.03 105.21 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H6 N4 O5' _chem_comp.formula_weight 214.136 _chem_comp.id XDS _chem_comp.mon_nstd_flag . _chem_comp.name (5S)-5-(dioxidanyl)-9-methyl-7H-purine-2,6,8-trione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C4 XDS doub 376 n n C4 N2 XDS sing 377 n n C4 N3 XDS sing 378 n n N2 C3 XDS sing 379 n n C3 O3 XDS doub 380 n n C3 C2 XDS sing 381 n n N3 C5 XDS doub 382 n n C5 N XDS sing 383 n n C5 C2 XDS sing 384 n n N C XDS sing 385 n n N C1 XDS sing 386 n n C2 O1 XDS sing 387 n n C2 N1 XDS sing 388 n n O1 O2 XDS sing 389 n n N1 C1 XDS sing 390 n n C1 O XDS doub 391 n n N2 H2 XDS sing 392 n n C HC1 XDS sing 393 n n C HC2 XDS sing 394 n n C HC3 XDS sing 395 n n N1 H1 XDS sing 396 n n O2 H3 XDS sing 397 n n # _atom_sites.entry_id 7QAR _atom_sites.fract_transf_matrix[1][1] 0.012533 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009505 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XDS AAA 1 401 1 XDS XDS . C 3 HOH AAA 1 501 25 HOH HOH . C 3 HOH AAA 2 502 56 HOH HOH . C 3 HOH AAA 3 503 52 HOH HOH . C 3 HOH AAA 4 504 48 HOH HOH . C 3 HOH AAA 5 505 79 HOH HOH . C 3 HOH AAA 6 506 90 HOH HOH . C 3 HOH AAA 7 507 43 HOH HOH . C 3 HOH AAA 8 508 68 HOH HOH . C 3 HOH AAA 9 509 41 HOH HOH . C 3 HOH AAA 10 510 32 HOH HOH . C 3 HOH AAA 11 511 20 HOH HOH . C 3 HOH AAA 12 512 5 HOH HOH . C 3 HOH AAA 13 513 28 HOH HOH . C 3 HOH AAA 14 514 37 HOH HOH . C 3 HOH AAA 15 515 21 HOH HOH . C 3 HOH AAA 16 516 47 HOH HOH . C 3 HOH AAA 17 517 33 HOH HOH . C 3 HOH AAA 18 518 30 HOH HOH . C 3 HOH AAA 19 519 36 HOH HOH . C 3 HOH AAA 20 520 6 HOH HOH . C 3 HOH AAA 21 521 31 HOH HOH . C 3 HOH AAA 22 522 44 HOH HOH . C 3 HOH AAA 23 523 15 HOH HOH . C 3 HOH AAA 24 524 103 HOH HOH . C 3 HOH AAA 25 525 23 HOH HOH . C 3 HOH AAA 26 526 53 HOH HOH . C 3 HOH AAA 27 527 66 HOH HOH . C 3 HOH AAA 28 528 22 HOH HOH . C 3 HOH AAA 29 529 26 HOH HOH . C 3 HOH AAA 30 530 87 HOH HOH . C 3 HOH AAA 31 531 86 HOH HOH . C 3 HOH AAA 32 532 55 HOH HOH . C 3 HOH AAA 33 533 16 HOH HOH . C 3 HOH AAA 34 534 61 HOH HOH . C 3 HOH AAA 35 535 46 HOH HOH . C 3 HOH AAA 36 536 27 HOH HOH . C 3 HOH AAA 37 537 92 HOH HOH . C 3 HOH AAA 38 538 17 HOH HOH . C 3 HOH AAA 39 539 42 HOH HOH . C 3 HOH AAA 40 540 1 HOH HOH . C 3 HOH AAA 41 541 34 HOH HOH . C 3 HOH AAA 42 542 39 HOH HOH . C 3 HOH AAA 43 543 51 HOH HOH . C 3 HOH AAA 44 544 24 HOH HOH . C 3 HOH AAA 45 545 97 HOH HOH . C 3 HOH AAA 46 546 14 HOH HOH . C 3 HOH AAA 47 547 84 HOH HOH . C 3 HOH AAA 48 548 9 HOH HOH . C 3 HOH AAA 49 549 94 HOH HOH . C 3 HOH AAA 50 550 8 HOH HOH . C 3 HOH AAA 51 551 72 HOH HOH . C 3 HOH AAA 52 552 19 HOH HOH . C 3 HOH AAA 53 553 3 HOH HOH . C 3 HOH AAA 54 554 2 HOH HOH . C 3 HOH AAA 55 555 62 HOH HOH . C 3 HOH AAA 56 556 58 HOH HOH . C 3 HOH AAA 57 557 115 HOH HOH . C 3 HOH AAA 58 558 12 HOH HOH . C 3 HOH AAA 59 559 40 HOH HOH . C 3 HOH AAA 60 560 71 HOH HOH . C 3 HOH AAA 61 561 102 HOH HOH . C 3 HOH AAA 62 562 73 HOH HOH . C 3 HOH AAA 63 563 54 HOH HOH . C 3 HOH AAA 64 564 45 HOH HOH . C 3 HOH AAA 65 565 75 HOH HOH . C 3 HOH AAA 66 566 128 HOH HOH . C 3 HOH AAA 67 567 91 HOH HOH . C 3 HOH AAA 68 568 78 HOH HOH . C 3 HOH AAA 69 569 38 HOH HOH . C 3 HOH AAA 70 570 64 HOH HOH . C 3 HOH AAA 71 571 11 HOH HOH . C 3 HOH AAA 72 572 60 HOH HOH . C 3 HOH AAA 73 573 29 HOH HOH . C 3 HOH AAA 74 574 88 HOH HOH . C 3 HOH AAA 75 575 10 HOH HOH . C 3 HOH AAA 76 576 50 HOH HOH . C 3 HOH AAA 77 577 120 HOH HOH . C 3 HOH AAA 78 578 96 HOH HOH . C 3 HOH AAA 79 579 76 HOH HOH . C 3 HOH AAA 80 580 4 HOH HOH . C 3 HOH AAA 81 581 82 HOH HOH . C 3 HOH AAA 82 582 122 HOH HOH . C 3 HOH AAA 83 583 129 HOH HOH . C 3 HOH AAA 84 584 89 HOH HOH . C 3 HOH AAA 85 585 59 HOH HOH . C 3 HOH AAA 86 586 67 HOH HOH . C 3 HOH AAA 87 587 81 HOH HOH . C 3 HOH AAA 88 588 63 HOH HOH . C 3 HOH AAA 89 589 13 HOH HOH . C 3 HOH AAA 90 590 35 HOH HOH . C 3 HOH AAA 91 591 18 HOH HOH . C 3 HOH AAA 92 592 99 HOH HOH . C 3 HOH AAA 93 593 70 HOH HOH . C 3 HOH AAA 94 594 107 HOH HOH . C 3 HOH AAA 95 595 7 HOH HOH . C 3 HOH AAA 96 596 105 HOH HOH . C 3 HOH AAA 97 597 119 HOH HOH . C 3 HOH AAA 98 598 69 HOH HOH . C 3 HOH AAA 99 599 113 HOH HOH . C 3 HOH AAA 100 600 74 HOH HOH . C 3 HOH AAA 101 601 77 HOH HOH . C 3 HOH AAA 102 602 85 HOH HOH . C 3 HOH AAA 103 603 93 HOH HOH . C 3 HOH AAA 104 604 130 HOH HOH . C 3 HOH AAA 105 605 65 HOH HOH . C 3 HOH AAA 106 606 125 HOH HOH . C 3 HOH AAA 107 607 116 HOH HOH . C 3 HOH AAA 108 608 110 HOH HOH . C 3 HOH AAA 109 609 123 HOH HOH . C 3 HOH AAA 110 610 121 HOH HOH . C 3 HOH AAA 111 611 131 HOH HOH . C 3 HOH AAA 112 612 117 HOH HOH . C 3 HOH AAA 113 613 101 HOH HOH . C 3 HOH AAA 114 614 106 HOH HOH . C 3 HOH AAA 115 615 114 HOH HOH . C 3 HOH AAA 116 616 111 HOH HOH . C 3 HOH AAA 117 617 118 HOH HOH . C 3 HOH AAA 118 618 132 HOH HOH . C 3 HOH AAA 119 619 126 HOH HOH . C 3 HOH AAA 120 620 133 HOH HOH . C 3 HOH AAA 121 621 124 HOH HOH . C 3 HOH AAA 122 622 127 HOH HOH . C 3 HOH AAA 123 623 104 HOH HOH . C 3 HOH AAA 124 624 112 HOH HOH . C 3 HOH AAA 125 625 109 HOH HOH . C 3 HOH AAA 126 626 98 HOH HOH . C 3 HOH AAA 127 627 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 XDS . . . B 2 28.036 27.857 38.004 1 34.45 0 O4 XDS 401 AAA 1 HETATM 2 C C4 XDS . . . B 2 29.146 27.386 37.916 1 33.65 0 C4 XDS 401 AAA 1 HETATM 3 N N2 XDS . . . B 2 29.781 27.431 36.713 1 33.02 0 N2 XDS 401 AAA 1 HETATM 4 C C3 XDS . . . B 2 31.13 27.466 36.599 1 33.74 0 C3 XDS 401 AAA 1 HETATM 5 O O3 XDS . . . B 2 31.704 27.514 35.524 1 34.21 0 O3 XDS 401 AAA 1 HETATM 6 N N3 XDS . . . B 2 29.704 26.854 39.015 1 32.55 0 N3 XDS 401 AAA 1 HETATM 7 C C5 XDS . . . B 2 31.006 26.729 38.917 1 32.94 0 C5 XDS 401 AAA 1 HETATM 8 N N XDS . . . B 2 31.811 25.887 39.664 1 32.58 0 N XDS 401 AAA 1 HETATM 9 C C XDS . . . B 2 31.367 25.065 40.786 1 32.4 0 C XDS 401 AAA 1 HETATM 10 C C2 XDS . . . B 2 31.908 27.424 37.897 1 34.11 0 C2 XDS 401 AAA 1 HETATM 11 O O1 XDS . . . B 2 32.391 28.729 38.284 1 35.92 0 O1 XDS 401 AAA 1 HETATM 12 O O2 XDS . . . B 2 32.667 28.753 39.726 1 33.97 0 O2 XDS 401 AAA 1 HETATM 13 N N1 XDS . . . B 2 32.981 26.449 37.839 1 33.1 0 N1 XDS 401 AAA 1 HETATM 14 C C1 XDS . . . B 2 33.035 25.729 38.973 1 33.21 0 C1 XDS 401 AAA 1 HETATM 15 O O XDS . . . B 2 33.953 25.024 39.359 1 32.42 0 O XDS 401 AAA 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #