data_7QB2
#
_model_server_result.job_id            eq7qqtEGNzZtHHvcAqxNKw 
_model_server_result.datetime_utc      '2024-11-16 05:30:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7qb2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    7QB2 
#
_exptl.entry_id    7QB2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              294.305 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-[(E)-(6-azanyl-1-methyl-2-oxidanylidene-indol-3-ylidene)methyl]benzoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7QB2 
_cell.length_a            97.785 
_cell.length_b            97.785 
_cell.length_c            80.188 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7QB2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    'P 65' 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 260 A SER 260 1_555 A N SEP 261 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C SEP 261 A SEP 261 1_555 A N GLU 262 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C17 H14 N2 O3' 
_chem_comp.formula_weight    294.305 
_chem_comp.id                A7X 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-[(E)-(6-azanyl-1-methyl-2-oxidanylidene-indol-3-ylidene)methyl]benzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(E)-4-((6-amino-1-methyl-2-oxoindolin-3-ylidene)methyl)benzoic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C14 A7X doub 1 n n 
C12 C11 A7X doub 2 n y 
C12 C13 A7X sing 3 n y 
C14 O2 A7X sing 4 n n 
C14 C13 A7X sing 5 n n 
C11 C10 A7X sing 6 n y 
C13 C15 A7X doub 7 n y 
C10 C9 A7X sing 8 n n 
C10 C16 A7X doub 9 n y 
C15 C16 A7X sing 10 n y 
C9 C2 A7X doub 11 e n 
O C A7X doub 12 n n 
C2 C A7X sing 13 n n 
C2 C3 A7X sing 14 n n 
C N A7X sing 15 n n 
C3 C8 A7X doub 16 n y 
C3 C4 A7X sing 17 n y 
C8 C7 A7X sing 18 n y 
N C4 A7X sing 19 n n 
N C1 A7X sing 20 n n 
C4 C5 A7X doub 21 n y 
C7 C6 A7X doub 22 n y 
C5 C6 A7X sing 23 n y 
C6 N1 A7X sing 24 n n 
C12 H1 A7X sing 25 n n 
C15 H2 A7X sing 26 n n 
C16 H3 A7X sing 27 n n 
C1 H4 A7X sing 28 n n 
C1 H5 A7X sing 29 n n 
C1 H6 A7X sing 30 n n 
C11 H7 A7X sing 31 n n 
C5 H8 A7X sing 32 n n 
C7 H9 A7X sing 33 n n 
C8 H10 A7X sing 34 n n 
C9 H11 A7X sing 35 n n 
N1 H12 A7X sing 36 n n 
N1 H13 A7X sing 37 n n 
O2 H14 A7X sing 38 n n 
#
_atom_sites.entry_id                     7QB2 
_atom_sites.fract_transf_matrix[1][1]    0.010227 
_atom_sites.fract_transf_matrix[1][2]    0.005904 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011809 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012471 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 401 1 GOL GOL . 
D 4 A7X A 1 402 1 A7X 552 . 
E 5 HOH A 1 501 91 HOH HOH . 
E 5 HOH A 2 502 64 HOH HOH . 
E 5 HOH A 3 503 75 HOH HOH . 
E 5 HOH A 4 504 107 HOH HOH . 
E 5 HOH A 5 505 30 HOH HOH . 
E 5 HOH A 6 506 37 HOH HOH . 
E 5 HOH A 7 507 25 HOH HOH . 
E 5 HOH A 8 508 7 HOH HOH . 
E 5 HOH A 9 509 80 HOH HOH . 
E 5 HOH A 10 510 9 HOH HOH . 
E 5 HOH A 11 511 89 HOH HOH . 
E 5 HOH A 12 512 39 HOH HOH . 
E 5 HOH A 13 513 31 HOH HOH . 
E 5 HOH A 14 514 8 HOH HOH . 
E 5 HOH A 15 515 45 HOH HOH . 
E 5 HOH A 16 516 16 HOH HOH . 
E 5 HOH A 17 517 56 HOH HOH . 
E 5 HOH A 18 518 59 HOH HOH . 
E 5 HOH A 19 519 24 HOH HOH . 
E 5 HOH A 20 520 18 HOH HOH . 
E 5 HOH A 21 521 48 HOH HOH . 
E 5 HOH A 22 522 6 HOH HOH . 
E 5 HOH A 23 523 38 HOH HOH . 
E 5 HOH A 24 524 52 HOH HOH . 
E 5 HOH A 25 525 50 HOH HOH . 
E 5 HOH A 26 526 86 HOH HOH . 
E 5 HOH A 27 527 3 HOH HOH . 
E 5 HOH A 28 528 95 HOH HOH . 
E 5 HOH A 29 529 65 HOH HOH . 
E 5 HOH A 30 530 22 HOH HOH . 
E 5 HOH A 31 531 97 HOH HOH . 
E 5 HOH A 32 532 2 HOH HOH . 
E 5 HOH A 33 533 79 HOH HOH . 
E 5 HOH A 34 534 105 HOH HOH . 
E 5 HOH A 35 535 23 HOH HOH . 
E 5 HOH A 36 536 27 HOH HOH . 
E 5 HOH A 37 537 69 HOH HOH . 
E 5 HOH A 38 538 83 HOH HOH . 
E 5 HOH A 39 539 17 HOH HOH . 
E 5 HOH A 40 540 62 HOH HOH . 
E 5 HOH A 41 541 5 HOH HOH . 
E 5 HOH A 42 542 70 HOH HOH . 
E 5 HOH A 43 543 68 HOH HOH . 
E 5 HOH A 44 544 28 HOH HOH . 
E 5 HOH A 45 545 98 HOH HOH . 
E 5 HOH A 46 546 34 HOH HOH . 
E 5 HOH A 47 547 44 HOH HOH . 
E 5 HOH A 48 548 103 HOH HOH . 
E 5 HOH A 49 549 73 HOH HOH . 
E 5 HOH A 50 550 10 HOH HOH . 
E 5 HOH A 51 551 47 HOH HOH . 
E 5 HOH A 52 552 14 HOH HOH . 
E 5 HOH A 53 553 43 HOH HOH . 
E 5 HOH A 54 554 49 HOH HOH . 
E 5 HOH A 55 555 66 HOH HOH . 
E 5 HOH A 56 556 96 HOH HOH . 
E 5 HOH A 57 557 93 HOH HOH . 
E 5 HOH A 58 558 1 HOH HOH . 
E 5 HOH A 59 559 102 HOH HOH . 
E 5 HOH A 60 560 54 HOH HOH . 
E 5 HOH A 61 561 4 HOH HOH . 
E 5 HOH A 62 562 53 HOH HOH . 
E 5 HOH A 63 563 88 HOH HOH . 
E 5 HOH A 64 564 63 HOH HOH . 
E 5 HOH A 65 565 104 HOH HOH . 
E 5 HOH A 66 566 46 HOH HOH . 
E 5 HOH A 67 567 21 HOH HOH . 
E 5 HOH A 68 568 11 HOH HOH . 
E 5 HOH A 69 569 99 HOH HOH . 
E 5 HOH A 70 570 77 HOH HOH . 
E 5 HOH A 71 571 13 HOH HOH . 
E 5 HOH A 72 572 78 HOH HOH . 
E 5 HOH A 73 573 15 HOH HOH . 
E 5 HOH A 74 574 71 HOH HOH . 
E 5 HOH A 75 575 101 HOH HOH . 
E 5 HOH A 76 576 19 HOH HOH . 
E 5 HOH A 77 577 33 HOH HOH . 
E 5 HOH A 78 578 32 HOH HOH . 
E 5 HOH A 79 579 58 HOH HOH . 
E 5 HOH A 80 580 106 HOH HOH . 
E 5 HOH A 81 581 51 HOH HOH . 
E 5 HOH A 82 582 100 HOH HOH . 
E 5 HOH A 83 583 76 HOH HOH . 
F 5 HOH D 1 101 85 HOH HOH . 
F 5 HOH D 2 102 60 HOH HOH . 
F 5 HOH D 3 103 74 HOH HOH . 
F 5 HOH D 4 104 67 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 A7X . . . D 4 -42.401 -1.561 4.42 1 30.27 ? C10 A7X 402 A 1 
HETATM 2 C C12 A7X . . . D 4 -41.191 -2.579 2.589 1 28.97 ? C12 A7X 402 A 1 
HETATM 3 C C15 A7X . . . D 4 -39.996 -1.814 4.51 1 34.25 ? C15 A7X 402 A 1 
HETATM 4 C C16 A7X . . . D 4 -41.186 -1.396 5.08 1 30.15 ? C16 A7X 402 A 1 
HETATM 5 C C14 A7X . . . D 4 -38.717 -2.956 2.687 1 35.18 ? C14 A7X 402 A 1 
HETATM 6 C C13 A7X . . . D 4 -39.984 -2.42 3.258 1 33.37 ? C13 A7X 402 A 1 
HETATM 7 N N A7X . . . D 4 -45.631 -0.846 7.956 1 41.2 ? N A7X 402 A 1 
HETATM 8 C C A7X . . . D 4 -45.438 -0.653 6.622 1 43.22 ? C A7X 402 A 1 
HETATM 9 O O A7X . . . D 4 -46.228 -0.119 5.854 1 49.74 ? O A7X 402 A 1 
HETATM 10 C C1 A7X . . . D 4 -46.802 -0.364 8.687 1 37.78 ? C1 A7X 402 A 1 
HETATM 11 C C11 A7X . . . D 4 -42.377 -2.157 3.161 1 29.29 ? C11 A7X 402 A 1 
HETATM 12 C C2 A7X . . . D 4 -44.103 -1.258 6.292 1 38.06 ? C2 A7X 402 A 1 
HETATM 13 C C3 A7X . . . D 4 -43.604 -1.81 7.541 1 37.69 ? C3 A7X 402 A 1 
HETATM 14 C C4 A7X . . . D 4 -44.567 -1.542 8.531 1 38.31 ? C4 A7X 402 A 1 
HETATM 15 C C5 A7X . . . D 4 -44.407 -1.98 9.833 1 34.52 ? C5 A7X 402 A 1 
HETATM 16 C C6 A7X . . . D 4 -43.268 -2.704 10.192 1 36.59 ? C6 A7X 402 A 1 
HETATM 17 C C7 A7X . . . D 4 -42.293 -2.953 9.214 1 34.33 ? C7 A7X 402 A 1 
HETATM 18 C C8 A7X . . . D 4 -42.461 -2.517 7.91 1 34.52 ? C8 A7X 402 A 1 
HETATM 19 C C9 A7X . . . D 4 -43.668 -1.14 5.026 1 35.07 ? C9 A7X 402 A 1 
HETATM 20 N N1 A7X . . . D 4 -43.116 -3.195 11.499 1 37.81 ? N1 A7X 402 A 1 
HETATM 21 O O1 A7X . . . D 4 -38.846 -3.596 1.552 1 30.71 ? O1 A7X 402 A 1 
HETATM 22 O O2 A7X . . . D 4 -37.639 -2.796 3.257 1 38.58 ? O2 A7X 402 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           22 
#