data_7QB4
#
_model_server_result.job_id            4CWE5nVLyCmHf7dykJPh0w 
_model_server_result.datetime_utc      '2024-11-24 01:00:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7qb4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":601}' 
#
_entry.id    7QB4 
#
_exptl.entry_id    7QB4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7QB4 
_cell.length_a            79.406 
_cell.length_b            111.048 
_cell.length_c            227.092 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7QB4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 69 A CYS 69 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf2 A SG CYS 257 A CYS 257 1_555 A SG CYS 272 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf3 A SG CYS 409 A CYS 409 1_555 A SG CYS 529 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf4 B SG CYS 69 B CYS 69 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf5 B SG CYS 257 B CYS 257 1_555 B SG CYS 272 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf6 B SG CYS 409 B CYS 409 1_555 B SG CYS 529 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
covale ? covale1 A ND2 ASN 350 A ASN 350 1_555 C C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale2 A ND2 ASN 464 A ASN 464 1_555 D C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale3 B ND2 ASN 350 B ASN 350 1_555 Q C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 358 n n 
C1 O1 NAG sing 359 n n 
C1 O5 NAG sing 360 n n 
C1 H1 NAG sing 361 n n 
C2 C3 NAG sing 362 n n 
C2 N2 NAG sing 363 n n 
C2 H2 NAG sing 364 n n 
C3 C4 NAG sing 365 n n 
C3 O3 NAG sing 366 n n 
C3 H3 NAG sing 367 n n 
C4 C5 NAG sing 368 n n 
C4 O4 NAG sing 369 n n 
C4 H4 NAG sing 370 n n 
C5 C6 NAG sing 371 n n 
C5 O5 NAG sing 372 n n 
C5 H5 NAG sing 373 n n 
C6 O6 NAG sing 374 n n 
C6 H61 NAG sing 375 n n 
C6 H62 NAG sing 376 n n 
C7 C8 NAG sing 377 n n 
C7 N2 NAG sing 378 n n 
C7 O7 NAG doub 379 n n 
C8 H81 NAG sing 380 n n 
C8 H82 NAG sing 381 n n 
C8 H83 NAG sing 382 n n 
N2 HN2 NAG sing 383 n n 
O1 HO1 NAG sing 384 n n 
O3 HO3 NAG sing 385 n n 
O4 HO4 NAG sing 386 n n 
O6 HO6 NAG sing 387 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7QB4 
_atom_sites.fract_transf_matrix[1][1]    0.012594 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009005 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004404 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 601 544 NAG NAG . 
D 2 NAG A 1 602 544 NAG NAG . 
E 3 AJ9 A 1 603 1 AJ9 LP2 . 
F 4 PG0 A 1 604 1 PG0 P2G . 
G 4 PG0 A 1 605 2 PG0 P2G . 
H 4 PG0 A 1 606 3 PG0 P2G . 
I 4 PG0 A 1 607 5 PG0 P2G . 
J 4 PG0 A 1 608 9 PG0 P2G . 
K 4 PG0 A 1 609 1 PG0 P2G . 
L 4 PG0 A 1 610 2 PG0 P2G . 
M 4 PG0 A 1 611 3 PG0 P2G . 
N 4 PG0 A 1 612 4 PG0 P2G . 
O 4 PG0 A 1 613 6 PG0 P2G . 
P 4 PG0 A 1 614 8 PG0 P2G . 
Q 2 NAG B 1 601 544 NAG NAG . 
R 3 AJ9 B 1 602 1 AJ9 LP2 . 
S 5 EDO B 1 603 1 EDO EDO . 
T 5 EDO B 1 604 2 EDO EDO . 
U 5 EDO B 1 605 3 EDO EDO . 
V 4 PG0 B 1 606 6 PG0 P2G . 
W 4 PG0 B 1 607 7 PG0 P2G . 
X 4 PG0 B 1 608 5 PG0 P2G . 
Y 4 PG0 B 1 609 7 PG0 P2G . 
Z 6 TOE B 1 610 9 TOE P3G . 
AA 7 9YU B 1 611 1 9YU P7G . 
BA 8 HOH A 1 701 357 HOH HOH . 
BA 8 HOH A 2 702 345 HOH HOH . 
BA 8 HOH A 3 703 23 HOH HOH . 
BA 8 HOH A 4 704 349 HOH HOH . 
BA 8 HOH A 5 705 335 HOH HOH . 
BA 8 HOH A 6 706 33 HOH HOH . 
BA 8 HOH A 7 707 420 HOH HOH . 
BA 8 HOH A 8 708 325 HOH HOH . 
BA 8 HOH A 9 709 11 HOH HOH . 
BA 8 HOH A 10 710 5 HOH HOH . 
BA 8 HOH A 11 711 99 HOH HOH . 
BA 8 HOH A 12 712 436 HOH HOH . 
BA 8 HOH A 13 713 326 HOH HOH . 
BA 8 HOH A 14 714 37 HOH HOH . 
BA 8 HOH A 15 715 93 HOH HOH . 
BA 8 HOH A 16 716 440 HOH HOH . 
BA 8 HOH A 17 717 355 HOH HOH . 
BA 8 HOH A 18 718 54 HOH HOH . 
BA 8 HOH A 19 719 365 HOH HOH . 
BA 8 HOH A 20 720 21 HOH HOH . 
BA 8 HOH A 21 721 423 HOH HOH . 
BA 8 HOH A 22 722 97 HOH HOH . 
BA 8 HOH A 23 723 338 HOH HOH . 
BA 8 HOH A 24 724 68 HOH HOH . 
BA 8 HOH A 25 725 112 HOH HOH . 
BA 8 HOH A 26 726 336 HOH HOH . 
BA 8 HOH A 27 727 351 HOH HOH . 
BA 8 HOH A 28 728 347 HOH HOH . 
BA 8 HOH A 29 729 409 HOH HOH . 
BA 8 HOH A 30 730 364 HOH HOH . 
BA 8 HOH A 31 731 31 HOH HOH . 
BA 8 HOH A 32 732 422 HOH HOH . 
BA 8 HOH A 33 733 14 HOH HOH . 
BA 8 HOH A 34 734 118 HOH HOH . 
BA 8 HOH A 35 735 344 HOH HOH . 
BA 8 HOH A 36 736 350 HOH HOH . 
BA 8 HOH A 37 737 29 HOH HOH . 
BA 8 HOH A 38 738 45 HOH HOH . 
BA 8 HOH A 39 739 126 HOH HOH . 
BA 8 HOH A 40 740 348 HOH HOH . 
BA 8 HOH A 41 741 332 HOH HOH . 
BA 8 HOH A 42 742 41 HOH HOH . 
BA 8 HOH A 43 743 333 HOH HOH . 
BA 8 HOH A 44 744 209 HOH HOH . 
BA 8 HOH A 45 745 343 HOH HOH . 
BA 8 HOH A 46 746 331 HOH HOH . 
BA 8 HOH A 47 747 107 HOH HOH . 
BA 8 HOH A 48 748 7 HOH HOH . 
BA 8 HOH A 49 749 185 HOH HOH . 
BA 8 HOH A 50 750 111 HOH HOH . 
BA 8 HOH A 51 751 330 HOH HOH . 
BA 8 HOH A 52 752 40 HOH HOH . 
BA 8 HOH A 53 753 358 HOH HOH . 
BA 8 HOH A 54 754 55 HOH HOH . 
BA 8 HOH A 55 755 421 HOH HOH . 
BA 8 HOH A 56 756 419 HOH HOH . 
BA 8 HOH A 57 757 337 HOH HOH . 
BA 8 HOH A 58 758 2 HOH HOH . 
BA 8 HOH A 59 759 334 HOH HOH . 
BA 8 HOH A 60 760 366 HOH HOH . 
BA 8 HOH A 61 761 322 HOH HOH . 
BA 8 HOH A 62 762 132 HOH HOH . 
BA 8 HOH A 63 763 425 HOH HOH . 
BA 8 HOH A 64 764 327 HOH HOH . 
BA 8 HOH A 65 765 356 HOH HOH . 
BA 8 HOH A 66 766 438 HOH HOH . 
BA 8 HOH A 67 767 410 HOH HOH . 
BA 8 HOH A 68 768 169 HOH HOH . 
BA 8 HOH A 69 769 82 HOH HOH . 
BA 8 HOH A 70 770 437 HOH HOH . 
BA 8 HOH A 71 771 424 HOH HOH . 
BA 8 HOH A 72 772 439 HOH HOH . 
CA 8 HOH B 1 701 401 HOH HOH . 
CA 8 HOH B 2 702 430 HOH HOH . 
CA 8 HOH B 3 703 373 HOH HOH . 
CA 8 HOH B 4 704 371 HOH HOH . 
CA 8 HOH B 5 705 441 HOH HOH . 
CA 8 HOH B 6 706 378 HOH HOH . 
CA 8 HOH B 7 707 8 HOH HOH . 
CA 8 HOH B 8 708 4 HOH HOH . 
CA 8 HOH B 9 709 25 HOH HOH . 
CA 8 HOH B 10 710 377 HOH HOH . 
CA 8 HOH B 11 711 206 HOH HOH . 
CA 8 HOH B 12 712 141 HOH HOH . 
CA 8 HOH B 13 713 385 HOH HOH . 
CA 8 HOH B 14 714 374 HOH HOH . 
CA 8 HOH B 15 715 152 HOH HOH . 
CA 8 HOH B 16 716 181 HOH HOH . 
CA 8 HOH B 17 717 320 HOH HOH . 
CA 8 HOH B 18 718 30 HOH HOH . 
CA 8 HOH B 19 719 88 HOH HOH . 
CA 8 HOH B 20 720 445 HOH HOH . 
CA 8 HOH B 21 721 6 HOH HOH . 
CA 8 HOH B 22 722 9 HOH HOH . 
CA 8 HOH B 23 723 10 HOH HOH . 
CA 8 HOH B 24 724 405 HOH HOH . 
CA 8 HOH B 25 725 60 HOH HOH . 
CA 8 HOH B 26 726 69 HOH HOH . 
CA 8 HOH B 27 727 383 HOH HOH . 
CA 8 HOH B 28 728 75 HOH HOH . 
CA 8 HOH B 29 729 376 HOH HOH . 
CA 8 HOH B 30 730 166 HOH HOH . 
CA 8 HOH B 31 731 408 HOH HOH . 
CA 8 HOH B 32 732 168 HOH HOH . 
CA 8 HOH B 33 733 429 HOH HOH . 
CA 8 HOH B 34 734 394 HOH HOH . 
CA 8 HOH B 35 735 15 HOH HOH . 
CA 8 HOH B 36 736 87 HOH HOH . 
CA 8 HOH B 37 737 109 HOH HOH . 
CA 8 HOH B 38 738 83 HOH HOH . 
CA 8 HOH B 39 739 324 HOH HOH . 
CA 8 HOH B 40 740 442 HOH HOH . 
CA 8 HOH B 41 741 35 HOH HOH . 
CA 8 HOH B 42 742 400 HOH HOH . 
CA 8 HOH B 43 743 319 HOH HOH . 
CA 8 HOH B 44 744 143 HOH HOH . 
CA 8 HOH B 45 745 42 HOH HOH . 
CA 8 HOH B 46 746 407 HOH HOH . 
CA 8 HOH B 47 747 36 HOH HOH . 
CA 8 HOH B 48 748 134 HOH HOH . 
CA 8 HOH B 49 749 386 HOH HOH . 
CA 8 HOH B 50 750 428 HOH HOH . 
CA 8 HOH B 51 751 375 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . Q 2 5.538 -17.876 -22.362 1 92.63 ? C1 NAG 601 B 1 
HETATM 2 C C2 NAG . . . Q 2 6.499 -18.325 -21.247 1 105.84 ? C2 NAG 601 B 1 
HETATM 3 C C3 NAG . . . Q 2 7.896 -18.605 -21.811 1 108.83 ? C3 NAG 601 B 1 
HETATM 4 C C4 NAG . . . Q 2 7.828 -19.581 -22.979 1 111.2 ? C4 NAG 601 B 1 
HETATM 5 C C5 NAG . . . Q 2 6.879 -19.047 -24.046 1 106.35 ? C5 NAG 601 B 1 
HETATM 6 C C6 NAG . . . Q 2 6.689 -20.004 -25.202 1 96.17 ? C6 NAG 601 B 1 
HETATM 7 C C7 NAG . . . Q 2 6.852 -17.603 -18.92 1 119.79 ? C7 NAG 601 B 1 
HETATM 8 C C8 NAG . . . Q 2 6.889 -16.433 -17.981 1 117.69 ? C8 NAG 601 B 1 
HETATM 9 N N2 NAG . . . Q 2 6.569 -17.32 -20.196 1 116.41 ? N2 NAG 601 B 1 
HETATM 10 O O3 NAG . . . Q 2 8.721 -19.149 -20.787 1 108.39 ? O3 NAG 601 B 1 
HETATM 11 O O4 NAG . . . Q 2 9.124 -19.778 -23.537 1 112.87 ? O4 NAG 601 B 1 
HETATM 12 O O5 NAG . . . Q 2 5.582 -18.831 -23.468 1 106.07 ? O5 NAG 601 B 1 
HETATM 13 O O6 NAG . . . Q 2 5.453 -20.699 -25.106 1 90.93 ? O6 NAG 601 B 1 
HETATM 14 O O7 NAG . . . Q 2 7.066 -18.749 -18.54 1 122.96 ? O7 NAG 601 B 1 
#
_model_server_stats.io_time_ms              32 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#