data_7QB9
#
_model_server_result.job_id            hK_91OGPtgL3byRl0qCetg 
_model_server_result.datetime_utc      '2024-10-15 11:29:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7qb9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":507}' 
#
_entry.id    7QB9 
#
_exptl.entry_id    7QB9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    22 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7QB9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7QB9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
? 3 BA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 25 A ASN 25 1_555 C C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
covale ? covale2 A ND2 ASN 32 A ASN 32 1_555 D C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale3 B ND2 ASN 25 B ASN 25 1_555 P C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
covale ? covale4 B ND2 ASN 32 B ASN 32 1_555 Q C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7QB9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 501 504 NAG NAG . 
D 2 NAG A 1 502 505 NAG NAG . 
E 3 Y01 A 1 503 9 Y01 Y01 . 
F 3 Y01 A 1 504 10 Y01 Y01 . 
G 3 Y01 A 1 505 16 Y01 Y01 . 
H 3 Y01 A 1 506 3 Y01 Y01 . 
I 3 Y01 A 1 507 2 Y01 Y01 . 
J 3 Y01 A 1 508 2 Y01 Y01 . 
K 3 Y01 A 1 509 1 Y01 Y01 . 
L 3 Y01 A 1 510 1 Y01 Y01 . 
M 3 Y01 A 1 511 2 Y01 Y01 . 
N 3 Y01 A 1 512 3 Y01 Y01 . 
O 3 Y01 A 1 513 7 Y01 Y01 . 
P 2 NAG B 1 501 504 NAG NAG . 
Q 2 NAG B 1 502 505 NAG NAG . 
R 3 Y01 B 1 503 1 Y01 Y01 . 
S 3 Y01 B 1 504 6 Y01 Y01 . 
T 3 Y01 B 1 505 8 Y01 Y01 . 
U 3 Y01 B 1 506 13 Y01 Y01 . 
V 3 Y01 B 1 507 14 Y01 Y01 . 
W 3 Y01 B 1 508 1 Y01 Y01 . 
X 3 Y01 B 1 509 5 Y01 Y01 . 
Y 3 Y01 B 1 510 14 Y01 Y01 . 
Z 3 Y01 B 1 511 17 Y01 Y01 . 
AA 3 Y01 B 1 512 1 Y01 Y01 . 
BA 3 Y01 B 1 513 1 Y01 Y01 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . V 3 106.735 94.88 111.578 1 76.96 ? CAA Y01 507 B 1 
HETATM 2 C CBA Y01 . . . V 3 107.116 95.623 110.309 1 76.96 ? CBA Y01 507 B 1 
HETATM 3 C CAB Y01 . . . V 3 108.218 94.882 109.574 1 76.96 ? CAB Y01 507 B 1 
HETATM 4 C CAN Y01 . . . V 3 107.523 97.066 110.609 1 76.96 ? CAN Y01 507 B 1 
HETATM 5 C CAJ Y01 . . . V 3 106.424 97.958 111.135 1 76.96 ? CAJ Y01 507 B 1 
HETATM 6 C CAO Y01 . . . V 3 106.915 99.334 111.551 1 76.96 ? CAO Y01 507 B 1 
HETATM 7 C CBB Y01 . . . V 3 107.916 99.346 112.719 1 76.96 ? CBB Y01 507 B 1 
HETATM 8 C CAC Y01 . . . V 3 109.277 99.853 112.252 1 76.96 ? CAC Y01 507 B 1 
HETATM 9 C CBE Y01 . . . V 3 107.356 100.137 113.924 1 76.96 ? CBE Y01 507 B 1 
HETATM 10 C CAP Y01 . . . V 3 105.808 100.004 114.054 1 76.96 ? CAP Y01 507 B 1 
HETATM 11 C CAQ Y01 . . . V 3 105.503 99.704 115.523 1 76.96 ? CAQ Y01 507 B 1 
HETATM 12 C CBG Y01 . . . V 3 106.715 100.268 116.238 1 76.96 ? CBG Y01 507 B 1 
HETATM 13 C CBI Y01 . . . V 3 107.897 99.816 115.36 1 76.96 ? CBI Y01 507 B 1 
HETATM 14 C CAE Y01 . . . V 3 108.163 98.305 115.482 1 76.96 ? CAE Y01 507 B 1 
HETATM 15 C CAU Y01 . . . V 3 109.111 100.619 115.837 1 76.96 ? CAU Y01 507 B 1 
HETATM 16 C CAS Y01 . . . V 3 109.384 100.403 117.333 1 76.96 ? CAS Y01 507 B 1 
HETATM 17 C CBF Y01 . . . V 3 108.167 100.679 118.239 1 76.96 ? CBF Y01 507 B 1 
HETATM 18 C CBD Y01 . . . V 3 106.894 99.979 117.721 1 76.96 ? CBD Y01 507 B 1 
HETATM 19 C CAK Y01 . . . V 3 105.684 100.449 118.518 1 76.96 ? CAK Y01 507 B 1 
HETATM 20 C CAI Y01 . . . V 3 105.955 100.497 119.985 1 76.96 ? CAI Y01 507 B 1 
HETATM 21 C CAZ Y01 . . . V 3 107.152 100.37 120.538 1 76.96 ? CAZ Y01 507 B 1 
HETATM 22 C CAV Y01 . . . V 3 107.306 100.298 122.042 1 76.96 ? CAV Y01 507 B 1 
HETATM 23 C CBH Y01 . . . V 3 108.451 100.349 119.735 1 76.96 ? CBH Y01 507 B 1 
HETATM 24 C CAD Y01 . . . V 3 109.093 98.958 119.896 1 76.96 ? CAD Y01 507 B 1 
HETATM 25 C CAT Y01 . . . V 3 109.389 101.425 120.324 1 76.96 ? CAT Y01 507 B 1 
HETATM 26 C CAR Y01 . . . V 3 109.548 101.339 121.846 1 76.96 ? CAR Y01 507 B 1 
HETATM 27 C CBC Y01 . . . V 3 108.214 101.395 122.55 1 76.96 ? CBC Y01 507 B 1 
HETATM 28 O OAW Y01 . . . V 3 108.414 101.194 123.98 1 76.96 ? OAW Y01 507 B 1 
HETATM 29 C CAY Y01 . . . V 3 108.755 102.245 124.718 1 76.96 ? CAY Y01 507 B 1 
HETATM 30 O OAG Y01 . . . V 3 108.437 103.369 124.459 1 76.96 ? OAG Y01 507 B 1 
HETATM 31 C CAM Y01 . . . V 3 109.628 101.86 125.878 1 76.96 ? CAM Y01 507 B 1 
HETATM 32 C CAL Y01 . . . V 3 110.087 103.001 126.765 1 76.96 ? CAL Y01 507 B 1 
HETATM 33 C CAX Y01 . . . V 3 110.971 102.588 127.929 1 76.96 ? CAX Y01 507 B 1 
HETATM 34 O OAH Y01 . . . V 3 112.049 102.016 127.675 1 76.96 ? OAH Y01 507 B 1 
HETATM 35 O OAF Y01 . . . V 3 110.579 102.841 129.086 1 76.96 ? OAF Y01 507 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           35 
#