data_7QBA # _model_server_result.job_id sBIhBPPhZyTNIg5GK7065g _model_server_result.datetime_utc '2024-12-21 16:46:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qba # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":402}' # _entry.id 7QBA # _exptl.entry_id 7QBA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QBA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QBA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OG1 THR 48 B THR 43 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc2 B OE1 GLU 86 B GLU 81 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc3 B OE2 GLU 86 B GLU 81 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc4 B OE1 GLN 159 B GLN 154 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc5 H MG MG . B MG 401 1_555 I O3G ATP . B ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc6 H MG MG . B MG 401 1_555 I O2B ATP . B ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc7 C OG1 THR 48 C THR 43 1_555 J MG MG . C MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc8 C OE1 GLU 86 C GLU 81 1_555 J MG MG . C MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc9 C OE1 GLN 159 C GLN 154 1_555 J MG MG . C MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc10 J MG MG . C MG 401 1_555 K O2B ATP . C ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc11 J MG MG . C MG 401 1_555 K O3G ATP . C ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc12 F O TYR 256 H TYR 256 1_555 L CA CA . H CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc13 F OE1 GLU 259 H GLU 259 1_555 L CA CA . H CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc14 F OE2 GLU 259 H GLU 259 1_555 L CA CA . H CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc15 F O MET 267 H MET 267 1_555 L CA CA . H CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc16 F OD1 ASP 273 H ASP 273 1_555 L CA CA . H CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? metalc ? metalc17 F OD1 ASN 324 H ASN 324 1_555 L CA CA . H CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc18 G O TYR 256 I TYR 256 1_555 M CA CA . I CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc19 G OE1 GLU 259 I GLU 259 1_555 M CA CA . I CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc20 G OE2 GLU 259 I GLU 259 1_555 M CA CA . I CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc21 G O MET 267 I MET 267 1_555 M CA CA . I CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc22 G OD1 ASP 273 I ASP 273 1_555 M CA CA . I CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc23 G OD2 ASP 273 I ASP 273 1_555 M CA CA . I CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc24 G OD1 ASN 324 I ASN 324 1_555 M CA CA . I CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7QBA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 5 MG B 1 401 311 MG MG . I 6 ATP B 1 402 312 ATP ATP . J 5 MG C 1 401 311 MG MG . K 6 ATP C 1 402 312 ATP ATP . L 7 CA H 1 701 651 CA CA . M 7 CA I 1 701 651 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . I 6 54.153 74.177 89.663 1 76.66 ? PG ATP 402 B 1 HETATM 2 O O1G ATP . . . I 6 52.86 74.512 89.002 1 76.66 ? O1G ATP 402 B 1 HETATM 3 O O2G ATP . . . I 6 55.32 74.286 88.749 1 76.66 ? O2G ATP 402 B 1 HETATM 4 O O3G ATP . . . I 6 54.132 72.875 90.39 1 76.66 ? O3G ATP 402 B 1 HETATM 5 P PB ATP . . . I 6 54.956 74.796 92.172 1 76.66 ? PB ATP 402 B 1 HETATM 6 O O1B ATP . . . I 6 53.866 74.112 92.912 1 76.66 ? O1B ATP 402 B 1 HETATM 7 O O2B ATP . . . I 6 56.221 74.074 91.87 1 76.66 ? O2B ATP 402 B 1 HETATM 8 O O3B ATP . . . I 6 54.352 75.273 90.785 1 76.66 ? O3B ATP 402 B 1 HETATM 9 P PA ATP . . . I 6 54.307 76.784 94.003 1 76.66 ? PA ATP 402 B 1 HETATM 10 O O1A ATP . . . I 6 52.984 76.792 93.325 1 76.66 ? O1A ATP 402 B 1 HETATM 11 O O2A ATP . . . I 6 54.471 76.046 95.282 1 76.66 ? O2A ATP 402 B 1 HETATM 12 O O3A ATP . . . I 6 55.3 76.147 92.943 1 76.66 ? O3A ATP 402 B 1 HETATM 13 O O5' ATP . . . I 6 54.811 78.288 94.177 1 76.66 ? O5' ATP 402 B 1 HETATM 14 C C5' ATP . . . I 6 53.759 79.199 94.559 1 76.66 ? C5' ATP 402 B 1 HETATM 15 C C4' ATP . . . I 6 54.17 80.628 94.311 1 76.66 ? C4' ATP 402 B 1 HETATM 16 O O4' ATP . . . I 6 55.16 81.012 95.296 1 76.66 ? O4' ATP 402 B 1 HETATM 17 C C3' ATP . . . I 6 54.808 80.933 92.952 1 76.66 ? C3' ATP 402 B 1 HETATM 18 O O3' ATP . . . I 6 54.529 82.274 92.58 1 76.66 ? O3' ATP 402 B 1 HETATM 19 C C2' ATP . . . I 6 56.295 80.855 93.278 1 76.66 ? C2' ATP 402 B 1 HETATM 20 O O2' ATP . . . I 6 57.058 81.578 92.343 1 76.66 ? O2' ATP 402 B 1 HETATM 21 C C1' ATP . . . I 6 56.301 81.514 94.648 1 76.66 ? C1' ATP 402 B 1 HETATM 22 N N9 ATP . . . I 6 57.437 81.161 95.467 1 76.66 ? N9 ATP 402 B 1 HETATM 23 C C8 ATP . . . I 6 57.955 79.912 95.695 1 76.66 ? C8 ATP 402 B 1 HETATM 24 N N7 ATP . . . I 6 58.992 79.933 96.499 1 76.66 ? N7 ATP 402 B 1 HETATM 25 C C5 ATP . . . I 6 59.16 81.274 96.812 1 76.66 ? C5 ATP 402 B 1 HETATM 26 C C6 ATP . . . I 6 60.086 81.95 97.62 1 76.66 ? C6 ATP 402 B 1 HETATM 27 N N6 ATP . . . I 6 61.057 81.341 98.291 1 76.66 ? N6 ATP 402 B 1 HETATM 28 N N1 ATP . . . I 6 59.963 83.294 97.717 1 76.66 ? N1 ATP 402 B 1 HETATM 29 C C2 ATP . . . I 6 58.979 83.897 97.039 1 76.66 ? C2 ATP 402 B 1 HETATM 30 N N3 ATP . . . I 6 58.053 83.365 96.249 1 76.66 ? N3 ATP 402 B 1 HETATM 31 C C4 ATP . . . I 6 58.204 82.036 96.18 1 76.66 ? C4 ATP 402 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 62 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #