data_7QBA # _model_server_result.job_id 0fvpA82pcAdt7yw7ILS-Hw _model_server_result.datetime_utc '2024-12-21 17:23:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qba # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":701}' # _entry.id 7QBA # _exptl.entry_id 7QBA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QBA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QBA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 L N N ? 7 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OG1 THR 48 B THR 43 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc2 B OE1 GLU 86 B GLU 81 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc3 B OE2 GLU 86 B GLU 81 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc4 B OE1 GLN 159 B GLN 154 1_555 H MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc5 H MG MG . B MG 401 1_555 I O3G ATP . B ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc6 H MG MG . B MG 401 1_555 I O2B ATP . B ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc7 C OG1 THR 48 C THR 43 1_555 J MG MG . C MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc8 C OE1 GLU 86 C GLU 81 1_555 J MG MG . C MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc9 C OE1 GLN 159 C GLN 154 1_555 J MG MG . C MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc10 J MG MG . C MG 401 1_555 K O2B ATP . C ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc11 J MG MG . C MG 401 1_555 K O3G ATP . C ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc12 F O TYR 256 H TYR 256 1_555 L CA CA . H CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc13 F OE1 GLU 259 H GLU 259 1_555 L CA CA . H CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc14 F OE2 GLU 259 H GLU 259 1_555 L CA CA . H CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc15 F O MET 267 H MET 267 1_555 L CA CA . H CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc16 F OD1 ASP 273 H ASP 273 1_555 L CA CA . H CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? metalc ? metalc17 F OD1 ASN 324 H ASN 324 1_555 L CA CA . H CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc18 G O TYR 256 I TYR 256 1_555 M CA CA . I CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc19 G OE1 GLU 259 I GLU 259 1_555 M CA CA . I CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc20 G OE2 GLU 259 I GLU 259 1_555 M CA CA . I CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc21 G O MET 267 I MET 267 1_555 M CA CA . I CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc22 G OD1 ASP 273 I ASP 273 1_555 M CA CA . I CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc23 G OD2 ASP 273 I ASP 273 1_555 M CA CA . I CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc24 G OD1 ASN 324 I ASN 324 1_555 M CA CA . I CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7QBA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 5 MG B 1 401 311 MG MG . I 6 ATP B 1 402 312 ATP ATP . J 5 MG C 1 401 311 MG MG . K 6 ATP C 1 402 312 ATP ATP . L 7 CA H 1 701 651 CA CA . M 7 CA I 1 701 651 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 7 _atom_site.Cartn_x 134.413 _atom_site.Cartn_y 158.252 _atom_site.Cartn_z 80.433 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 87.81 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 701 _atom_site.auth_asym_id I _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 585 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #