data_7QBI # _model_server_result.job_id -J16gZ5JHdk4479qI226Hg _model_server_result.datetime_utc '2024-11-05 04:04:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qbi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":504}' # _entry.id 7QBI # _exptl.entry_id 7QBI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QBI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QBI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 25 A ASN 25 1_555 E C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 32 A ASN 32 1_555 F C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 D ND2 ASN 25 B ASN 25 1_555 P C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 D ND2 ASN 32 B ASN 32 1_555 O C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7QBI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 501 303 NAG NAG . F 3 NAG A 1 502 304 NAG NAG . G 4 Y01 A 1 503 1 Y01 Y01 . H 4 Y01 A 1 504 2 Y01 Y01 . I 4 Y01 A 1 505 6 Y01 Y01 . J 4 Y01 A 1 506 3 Y01 Y01 . K 4 Y01 I 1 101 2 Y01 Y01 . L 4 Y01 I 1 102 3 Y01 Y01 . M 4 Y01 K 1 101 3 Y01 Y01 . N 4 Y01 K 1 102 3 Y01 Y01 . O 3 NAG B 1 501 304 NAG NAG . P 3 NAG B 1 502 305 NAG NAG . Q 4 Y01 B 1 503 1 Y01 Y01 . R 4 Y01 B 1 504 1 Y01 Y01 . S 4 Y01 B 1 505 4 Y01 Y01 . T 4 Y01 B 1 506 3 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . H 4 133.064 125.116 132.799 1 43.09 ? CAA Y01 504 A 1 HETATM 2 C CBA Y01 . . . H 4 131.687 125.462 132.251 1 43.09 ? CBA Y01 504 A 1 HETATM 3 C CAB Y01 . . . H 4 131.057 126.575 133.072 1 43.09 ? CAB Y01 504 A 1 HETATM 4 C CAN Y01 . . . H 4 130.781 124.229 132.2 1 43.09 ? CAN Y01 504 A 1 HETATM 5 C CAJ Y01 . . . H 4 131.107 123.219 131.122 1 43.09 ? CAJ Y01 504 A 1 HETATM 6 C CAO Y01 . . . H 4 130.566 123.602 129.756 1 43.09 ? CAO Y01 504 A 1 HETATM 7 C CBB Y01 . . . H 4 131.196 122.867 128.556 1 43.09 ? CBB Y01 504 A 1 HETATM 8 C CAC Y01 . . . H 4 131.457 121.4 128.894 1 43.09 ? CAC Y01 504 A 1 HETATM 9 C CBE Y01 . . . H 4 130.315 123.051 127.297 1 43.09 ? CBE Y01 504 A 1 HETATM 10 C CAP Y01 . . . H 4 130.059 124.556 126.991 1 43.09 ? CAP Y01 504 A 1 HETATM 11 C CAQ Y01 . . . H 4 130.109 124.73 125.468 1 43.09 ? CAQ Y01 504 A 1 HETATM 12 C CBG Y01 . . . H 4 129.942 123.313 124.946 1 43.09 ? CBG Y01 504 A 1 HETATM 13 C CBI Y01 . . . H 4 130.775 122.453 125.922 1 43.09 ? CBI Y01 504 A 1 HETATM 14 C CAE Y01 . . . H 4 132.293 122.657 125.749 1 43.09 ? CAE Y01 504 A 1 HETATM 15 C CAU Y01 . . . H 4 130.384 120.998 125.634 1 43.09 ? CAU Y01 504 A 1 HETATM 16 C CAS Y01 . . . H 4 130.641 120.619 124.171 1 43.09 ? CAS Y01 504 A 1 HETATM 17 C CBF Y01 . . . H 4 129.944 121.55 123.157 1 43.09 ? CBF Y01 504 A 1 HETATM 18 C CBD Y01 . . . H 4 130.19 123.041 123.465 1 43.09 ? CBD Y01 504 A 1 HETATM 19 C CAK Y01 . . . H 4 129.276 123.902 122.6 1 43.09 ? CAK Y01 504 A 1 HETATM 20 C CAI Y01 . . . H 4 129.158 123.398 121.196 1 43.09 ? CAI Y01 504 A 1 HETATM 21 C CAZ Y01 . . . H 4 129.645 122.247 120.751 1 43.09 ? CAZ Y01 504 A 1 HETATM 22 C CAV Y01 . . . H 4 129.6 121.908 119.273 1 43.09 ? CAV Y01 504 A 1 HETATM 23 C CBH Y01 . . . H 4 130.259 121.194 121.669 1 43.09 ? CBH Y01 504 A 1 HETATM 24 C CAD Y01 . . . H 4 131.776 121.147 121.396 1 43.09 ? CAD Y01 504 A 1 HETATM 25 C CAT Y01 . . . H 4 129.629 119.826 121.327 1 43.09 ? CAT Y01 504 A 1 HETATM 26 C CAR Y01 . . . H 4 129.643 119.491 119.835 1 43.09 ? CAR Y01 504 A 1 HETATM 27 C CBC Y01 . . . H 4 128.953 120.559 119.026 1 43.09 ? CBC Y01 504 A 1 HETATM 28 O OAW Y01 . . . H 4 129.087 120.222 117.611 1 43.09 ? OAW Y01 504 A 1 HETATM 29 C CAY Y01 . . . H 4 128.449 120.973 116.718 1 43.09 ? CAY Y01 504 A 1 HETATM 30 O OAG Y01 . . . H 4 127.613 121.778 117.004 1 43.09 ? OAG Y01 504 A 1 HETATM 31 C CAM Y01 . . . H 4 128.92 120.706 115.316 1 43.09 ? CAM Y01 504 A 1 HETATM 32 C CAL Y01 . . . H 4 127.819 120.413 114.316 1 43.09 ? CAL Y01 504 A 1 HETATM 33 C CAX Y01 . . . H 4 128.292 120.289 112.878 1 43.09 ? CAX Y01 504 A 1 HETATM 34 O OAH Y01 . . . H 4 127.833 121.087 112.036 1 43.09 ? OAH Y01 504 A 1 HETATM 35 O OAF Y01 . . . H 4 129.118 119.397 112.603 1 43.09 ? OAF Y01 504 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 35 #