data_7QBI # _model_server_result.job_id AmxiGoEDpPK84zYiuUpLqw _model_server_result.datetime_utc '2024-11-24 19:44:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qbi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":506}' # _entry.id 7QBI # _exptl.entry_id 7QBI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QBI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QBI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 25 A ASN 25 1_555 E C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 32 A ASN 32 1_555 F C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 D ND2 ASN 25 B ASN 25 1_555 P C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 D ND2 ASN 32 B ASN 32 1_555 O C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 404 n n CBA CAB Y01 sing 405 n n CBA CAN Y01 sing 406 n n CAN CAJ Y01 sing 407 n n CAJ CAO Y01 sing 408 n n CAO CBB Y01 sing 409 n n CBB CAC Y01 sing 410 n n CBB CBE Y01 sing 411 n n CBE CAP Y01 sing 412 n n CBE CBI Y01 sing 413 n n CAP CAQ Y01 sing 414 n n CAQ CBG Y01 sing 415 n n CBG CBI Y01 sing 416 n n CBG CBD Y01 sing 417 n n CBI CAE Y01 sing 418 n n CBI CAU Y01 sing 419 n n CAU CAS Y01 sing 420 n n CAS CBF Y01 sing 421 n n CBF CBD Y01 sing 422 n n CBF CBH Y01 sing 423 n n CBD CAK Y01 sing 424 n n CAK CAI Y01 sing 425 n n CAI CAZ Y01 doub 426 n n CAZ CAV Y01 sing 427 n n CAZ CBH Y01 sing 428 n n CAV CBC Y01 sing 429 n n CBH CAD Y01 sing 430 n n CBH CAT Y01 sing 431 n n CAT CAR Y01 sing 432 n n CAR CBC Y01 sing 433 n n CBC OAW Y01 sing 434 n n OAW CAY Y01 sing 435 n n CAY OAG Y01 doub 436 n n CAY CAM Y01 sing 437 n n CAM CAL Y01 sing 438 n n CAL CAX Y01 sing 439 n n CAX OAH Y01 sing 440 n n CAX OAF Y01 doub 441 n n CAA HAA1 Y01 sing 442 n n CAA HAA2 Y01 sing 443 n n CAA HAA3 Y01 sing 444 n n CBA HBA Y01 sing 445 n n CAB HAB1 Y01 sing 446 n n CAB HAB2 Y01 sing 447 n n CAB HAB3 Y01 sing 448 n n CAN HAN1 Y01 sing 449 n n CAN HAN2 Y01 sing 450 n n CAJ HAJ1 Y01 sing 451 n n CAJ HAJ2 Y01 sing 452 n n CAO HAO1 Y01 sing 453 n n CAO HAO2 Y01 sing 454 n n CBB HBB Y01 sing 455 n n CAC HAC1 Y01 sing 456 n n CAC HAC2 Y01 sing 457 n n CAC HAC3 Y01 sing 458 n n CBE HBE Y01 sing 459 n n CAP HAP1 Y01 sing 460 n n CAP HAP2 Y01 sing 461 n n CAQ HAQ1 Y01 sing 462 n n CAQ HAQ2 Y01 sing 463 n n CBG HBG Y01 sing 464 n n CBD HBD Y01 sing 465 n n CAE HAE1 Y01 sing 466 n n CAE HAE2 Y01 sing 467 n n CAE HAE3 Y01 sing 468 n n CAU HAU1 Y01 sing 469 n n CAU HAU2 Y01 sing 470 n n CAS HAS1 Y01 sing 471 n n CAS HAS2 Y01 sing 472 n n CBF HBF Y01 sing 473 n n CAK HAK1 Y01 sing 474 n n CAK HAK2 Y01 sing 475 n n CAI HAI Y01 sing 476 n n CAV HAV1 Y01 sing 477 n n CAV HAV2 Y01 sing 478 n n CBC HBC Y01 sing 479 n n CAD HAD1 Y01 sing 480 n n CAD HAD2 Y01 sing 481 n n CAD HAD3 Y01 sing 482 n n CAT HAT1 Y01 sing 483 n n CAT HAT2 Y01 sing 484 n n CAR HAR1 Y01 sing 485 n n CAR HAR2 Y01 sing 486 n n CAM HAM1 Y01 sing 487 n n CAM HAM2 Y01 sing 488 n n CAL HAL1 Y01 sing 489 n n CAL HAL2 Y01 sing 490 n n OAH HAH Y01 sing 491 n n # _atom_sites.entry_id 7QBI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 501 303 NAG NAG . F 3 NAG A 1 502 304 NAG NAG . G 4 Y01 A 1 503 1 Y01 Y01 . H 4 Y01 A 1 504 2 Y01 Y01 . I 4 Y01 A 1 505 6 Y01 Y01 . J 4 Y01 A 1 506 3 Y01 Y01 . K 4 Y01 I 1 101 2 Y01 Y01 . L 4 Y01 I 1 102 3 Y01 Y01 . M 4 Y01 K 1 101 3 Y01 Y01 . N 4 Y01 K 1 102 3 Y01 Y01 . O 3 NAG B 1 501 304 NAG NAG . P 3 NAG B 1 502 305 NAG NAG . Q 4 Y01 B 1 503 1 Y01 Y01 . R 4 Y01 B 1 504 1 Y01 Y01 . S 4 Y01 B 1 505 4 Y01 Y01 . T 4 Y01 B 1 506 3 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . J 4 142.518 141.305 132.44 1 45.02 ? CAA Y01 506 A 1 HETATM 2 C CBA Y01 . . . J 4 143.134 140.39 131.391 1 45.02 ? CBA Y01 506 A 1 HETATM 3 C CAB Y01 . . . J 4 144.578 140.077 131.744 1 45.02 ? CAB Y01 506 A 1 HETATM 4 C CAN Y01 . . . J 4 143.018 140.991 129.982 1 45.02 ? CAN Y01 506 A 1 HETATM 5 C CAJ Y01 . . . J 4 143.776 142.284 129.753 1 45.02 ? CAJ Y01 506 A 1 HETATM 6 C CAO Y01 . . . J 4 143.476 142.933 128.412 1 45.02 ? CAO Y01 506 A 1 HETATM 7 C CBB Y01 . . . J 4 144.542 142.717 127.312 1 45.02 ? CBB Y01 506 A 1 HETATM 8 C CAC Y01 . . . J 4 144.873 141.23 127.193 1 45.02 ? CAC Y01 506 A 1 HETATM 9 C CBE Y01 . . . J 4 144.096 143.338 125.957 1 45.02 ? CBE Y01 506 A 1 HETATM 10 C CAP Y01 . . . J 4 143.36 144.697 126.122 1 45.02 ? CAP Y01 506 A 1 HETATM 11 C CAQ Y01 . . . J 4 143.52 145.464 124.797 1 45.02 ? CAQ Y01 506 A 1 HETATM 12 C CBG Y01 . . . J 4 144.289 144.503 123.891 1 45.02 ? CBG Y01 506 A 1 HETATM 13 C CBI Y01 . . . J 4 145.157 143.66 124.853 1 45.02 ? CBI Y01 506 A 1 HETATM 14 C CAE Y01 . . . J 4 146.332 144.462 125.456 1 45.02 ? CAE Y01 506 A 1 HETATM 15 C CAU Y01 . . . J 4 145.676 142.478 124.026 1 45.02 ? CAU Y01 506 A 1 HETATM 16 C CAS Y01 . . . J 4 146.463 142.944 122.794 1 45.02 ? CAS Y01 506 A 1 HETATM 17 C CBF Y01 . . . J 4 145.689 143.927 121.889 1 45.02 ? CBF Y01 506 A 1 HETATM 18 C CBD Y01 . . . J 4 145.033 145.071 122.688 1 45.02 ? CBD Y01 506 A 1 HETATM 19 C CAK Y01 . . . J 4 144.079 145.849 121.787 1 45.02 ? CAK Y01 506 A 1 HETATM 20 C CAI Y01 . . . J 4 144.622 146.065 120.411 1 45.02 ? CAI Y01 506 A 1 HETATM 21 C CAZ Y01 . . . J 4 145.733 145.521 119.932 1 45.02 ? CAZ Y01 506 A 1 HETATM 22 C CAV Y01 . . . J 4 146.267 145.924 118.571 1 45.02 ? CAV Y01 506 A 1 HETATM 23 C CBH Y01 . . . J 4 146.53 144.456 120.683 1 45.02 ? CBH Y01 506 A 1 HETATM 24 C CAD Y01 . . . J 4 147.863 145.088 121.136 1 45.02 ? CAD Y01 506 A 1 HETATM 25 C CAT Y01 . . . J 4 146.811 143.288 119.711 1 45.02 ? CAT Y01 506 A 1 HETATM 26 C CAR Y01 . . . J 4 147.388 143.727 118.363 1 45.02 ? CAR Y01 506 A 1 HETATM 27 C CBC Y01 . . . J 4 146.485 144.722 117.681 1 45.02 ? CBC Y01 506 A 1 HETATM 28 O OAW Y01 . . . J 4 147.1 145.199 116.445 1 45.02 ? OAW Y01 506 A 1 HETATM 29 C CAY Y01 . . . J 4 147.249 144.34 115.44 1 45.02 ? CAY Y01 506 A 1 HETATM 30 O OAG Y01 . . . J 4 148.29 143.819 115.16 1 45.02 ? OAG Y01 506 A 1 HETATM 31 C CAM Y01 . . . J 4 145.974 144.15 114.665 1 45.02 ? CAM Y01 506 A 1 HETATM 32 C CAL Y01 . . . J 4 145.389 145.419 114.075 1 45.02 ? CAL Y01 506 A 1 HETATM 33 C CAX Y01 . . . J 4 144.146 145.205 113.228 1 45.02 ? CAX Y01 506 A 1 HETATM 34 O OAH Y01 . . . J 4 143.146 144.695 113.769 1 45.02 ? OAH Y01 506 A 1 HETATM 35 O OAF Y01 . . . J 4 144.183 145.549 112.03 1 45.02 ? OAF Y01 506 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #