data_7QBQ # _model_server_result.job_id 8r8wv2fnnx44AiZFBPrT3g _model_server_result.datetime_utc '2024-11-28 00:19:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qbq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 7QBQ # _exptl.entry_id 7QBQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QBQ _cell.length_a 154.606 _cell.length_b 154.606 _cell.length_c 127.209 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QBQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC NAG C1 O1 . O6 HO6 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 601 NAG 2 n B FUC 2 B 2 FUC A 602 FUC 2 n C NAG 1 C 1 NAG A 603 NAG 2 n C FUC 2 C 2 FUC A 612 FUC 3 n D NAG 1 D 1 NAG A 605 NAG 3 n D NAG 2 D 2 NAG A 604 NAG 3 n D FUC 3 D 3 FUC A 606 FUC 3 n E NAG 1 E 1 NAG A 607 NAG 3 n E NAG 2 E 2 NAG A 608 NAG 3 n E FUC 3 E 3 FUC A 609 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 65 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 252 A CYS 252 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf3 A SG CYS 400 A CYS 400 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? covale ? covale1 A ND2 ASN 57 A ASN 57 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 A ND2 ASN 106 A ASN 106 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale3 A ND2 ASN 241 A ASN 241 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 A ND2 ASN 256 A ASN 256 1_555 F C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale5 A ND2 ASN 341 A ASN 341 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 A ND2 ASN 485 A ASN 485 1_555 G C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale8 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale10 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale11 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale12 E O6 NAG . E NAG 1 1_555 E C1 FUC . E FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 297 n n C1 O1 NAG sing 298 n n C1 O5 NAG sing 299 n n C1 H1 NAG sing 300 n n C2 C3 NAG sing 301 n n C2 N2 NAG sing 302 n n C2 H2 NAG sing 303 n n C3 C4 NAG sing 304 n n C3 O3 NAG sing 305 n n C3 H3 NAG sing 306 n n C4 C5 NAG sing 307 n n C4 O4 NAG sing 308 n n C4 H4 NAG sing 309 n n C5 C6 NAG sing 310 n n C5 O5 NAG sing 311 n n C5 H5 NAG sing 312 n n C6 O6 NAG sing 313 n n C6 H61 NAG sing 314 n n C6 H62 NAG sing 315 n n C7 C8 NAG sing 316 n n C7 N2 NAG sing 317 n n C7 O7 NAG doub 318 n n C8 H81 NAG sing 319 n n C8 H82 NAG sing 320 n n C8 H83 NAG sing 321 n n N2 HN2 NAG sing 322 n n O1 HO1 NAG sing 323 n n O3 HO3 NAG sing 324 n n O4 HO4 NAG sing 325 n n O6 HO6 NAG sing 326 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7QBQ _atom_sites.fract_transf_matrix[1][1] 0.006468 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006468 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007861 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 NAG A 1 601 610 NAG NAG . G 4 NAG A 1 602 611 NAG NAG . H 5 AI0 A 1 603 613 AI0 LIG . I 5 AI0 A 1 604 614 AI0 LIG . J 6 SO4 A 1 605 1 SO4 SO4 . K 6 SO4 A 1 606 2 SO4 SO4 . L 6 SO4 A 1 607 3 SO4 SO4 . M 6 SO4 A 1 608 4 SO4 SO4 . N 6 SO4 A 1 609 5 SO4 SO4 . O 7 CL A 1 610 1 CL CL . P 7 CL A 1 611 2 CL CL . Q 7 CL A 1 612 3 CL CL . R 8 HOH A 1 701 39 HOH HOH . R 8 HOH A 2 702 43 HOH HOH . R 8 HOH A 3 703 74 HOH HOH . R 8 HOH A 4 704 2 HOH HOH . R 8 HOH A 5 705 82 HOH HOH . R 8 HOH A 6 706 23 HOH HOH . R 8 HOH A 7 707 92 HOH HOH . R 8 HOH A 8 708 54 HOH HOH . R 8 HOH A 9 709 42 HOH HOH . R 8 HOH A 10 710 91 HOH HOH . R 8 HOH A 11 711 51 HOH HOH . R 8 HOH A 12 712 19 HOH HOH . R 8 HOH A 13 713 38 HOH HOH . R 8 HOH A 14 714 22 HOH HOH . R 8 HOH A 15 715 62 HOH HOH . R 8 HOH A 16 716 30 HOH HOH . R 8 HOH A 17 717 15 HOH HOH . R 8 HOH A 18 718 78 HOH HOH . R 8 HOH A 19 719 24 HOH HOH . R 8 HOH A 20 720 26 HOH HOH . R 8 HOH A 21 721 34 HOH HOH . R 8 HOH A 22 722 17 HOH HOH . R 8 HOH A 23 723 70 HOH HOH . R 8 HOH A 24 724 87 HOH HOH . R 8 HOH A 25 725 25 HOH HOH . R 8 HOH A 26 726 13 HOH HOH . R 8 HOH A 27 727 21 HOH HOH . R 8 HOH A 28 728 71 HOH HOH . R 8 HOH A 29 729 47 HOH HOH . R 8 HOH A 30 730 14 HOH HOH . R 8 HOH A 31 731 12 HOH HOH . R 8 HOH A 32 732 49 HOH HOH . R 8 HOH A 33 733 50 HOH HOH . R 8 HOH A 34 734 89 HOH HOH . R 8 HOH A 35 735 58 HOH HOH . R 8 HOH A 36 736 29 HOH HOH . R 8 HOH A 37 737 27 HOH HOH . R 8 HOH A 38 738 63 HOH HOH . R 8 HOH A 39 739 31 HOH HOH . R 8 HOH A 40 740 37 HOH HOH . R 8 HOH A 41 741 3 HOH HOH . R 8 HOH A 42 742 32 HOH HOH . R 8 HOH A 43 743 60 HOH HOH . R 8 HOH A 44 744 48 HOH HOH . R 8 HOH A 45 745 28 HOH HOH . R 8 HOH A 46 746 68 HOH HOH . R 8 HOH A 47 747 85 HOH HOH . R 8 HOH A 48 748 36 HOH HOH . R 8 HOH A 49 749 41 HOH HOH . R 8 HOH A 50 750 59 HOH HOH . R 8 HOH A 51 751 65 HOH HOH . R 8 HOH A 52 752 35 HOH HOH . R 8 HOH A 53 753 81 HOH HOH . R 8 HOH A 54 754 18 HOH HOH . R 8 HOH A 55 755 55 HOH HOH . R 8 HOH A 56 756 8 HOH HOH . R 8 HOH A 57 757 46 HOH HOH . R 8 HOH A 58 758 64 HOH HOH . R 8 HOH A 59 759 80 HOH HOH . R 8 HOH A 60 760 56 HOH HOH . R 8 HOH A 61 761 90 HOH HOH . R 8 HOH A 62 762 9 HOH HOH . R 8 HOH A 63 763 44 HOH HOH . R 8 HOH A 64 764 45 HOH HOH . R 8 HOH A 65 765 5 HOH HOH . R 8 HOH A 66 766 1 HOH HOH . R 8 HOH A 67 767 4 HOH HOH . R 8 HOH A 68 768 6 HOH HOH . R 8 HOH A 69 769 16 HOH HOH . R 8 HOH A 70 770 7 HOH HOH . R 8 HOH A 71 771 72 HOH HOH . R 8 HOH A 72 772 33 HOH HOH . R 8 HOH A 73 773 53 HOH HOH . R 8 HOH A 74 774 61 HOH HOH . R 8 HOH A 75 775 57 HOH HOH . R 8 HOH A 76 776 84 HOH HOH . R 8 HOH A 77 777 52 HOH HOH . R 8 HOH A 78 778 86 HOH HOH . R 8 HOH A 79 779 20 HOH HOH . R 8 HOH A 80 780 67 HOH HOH . R 8 HOH A 81 781 79 HOH HOH . R 8 HOH A 82 782 83 HOH HOH . R 8 HOH A 83 783 88 HOH HOH . R 8 HOH A 84 784 66 HOH HOH . R 8 HOH A 85 785 69 HOH HOH . R 8 HOH A 86 786 77 HOH HOH . R 8 HOH A 87 787 76 HOH HOH . R 8 HOH A 88 788 73 HOH HOH . R 8 HOH A 89 789 10 HOH HOH . R 8 HOH A 90 790 75 HOH HOH . R 8 HOH A 91 791 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 4 -8.975 46.282 15.064 1 150.26 ? C1 NAG 601 A 1 HETATM 2 C C2 NAG . . . F 4 -7.966 45.388 14.314 1 144.94 ? C2 NAG 601 A 1 HETATM 3 C C3 NAG . . . F 4 -8.679 44.177 13.697 1 148.02 ? C3 NAG 601 A 1 HETATM 4 C C4 NAG . . . F 4 -9.535 43.458 14.732 1 151.44 ? C4 NAG 601 A 1 HETATM 5 C C5 NAG . . . F 4 -10.488 44.451 15.384 1 152.86 ? C5 NAG 601 A 1 HETATM 6 C C6 NAG . . . F 4 -11.335 43.847 16.478 1 155.24 ? C6 NAG 601 A 1 HETATM 7 C C7 NAG . . . F 4 -6.244 45.693 12.574 1 144.57 ? C7 NAG 601 A 1 HETATM 8 C C8 NAG . . . F 4 -5.677 46.632 11.551 1 139.59 ? C8 NAG 601 A 1 HETATM 9 N N2 NAG . . . F 4 -7.282 46.154 13.282 1 145.61 ? N2 NAG 601 A 1 HETATM 10 O O3 NAG . . . F 4 -7.725 43.273 13.15 1 141.94 ? O3 NAG 601 A 1 HETATM 11 O O4 NAG . . . F 4 -10.28 42.415 14.114 1 151.89 ? O4 NAG 601 A 1 HETATM 12 O O5 NAG . . . F 4 -9.723 45.495 15.992 1 156.13 ? O5 NAG 601 A 1 HETATM 13 O O6 NAG . . . F 4 -11.85 44.855 17.338 1 153.73 ? O6 NAG 601 A 1 HETATM 14 O O7 NAG . . . F 4 -5.784 44.57 12.75 1 138.98 ? O7 NAG 601 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #