data_7QBQ
#
_model_server_result.job_id            jHXvGgjFsXZe_pmOVnTCbw 
_model_server_result.datetime_utc      '2024-11-06 01:33:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7qbq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":609}' 
#
_entry.id    7QBQ 
#
_exptl.entry_id    7QBQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7QBQ 
_cell.length_a            154.606 
_cell.length_b            154.606 
_cell.length_c            127.209 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7QBQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    'I 4 2' 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 J N N 
? 6 K N N 
? 6 L N N 
? 6 M N N 
? 6 N N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide 
3 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 FUC NAG C1 O1 . O6 HO6 . sing 
2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
3 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG A 601 NAG 
2 n B FUC 2 B 2 FUC A 602 FUC 
2 n C NAG 1 C 1 NAG A 603 NAG 
2 n C FUC 2 C 2 FUC A 612 FUC 
3 n D NAG 1 D 1 NAG A 605 NAG 
3 n D NAG 2 D 2 NAG A 604 NAG 
3 n D FUC 3 D 3 FUC A 606 FUC 
3 n E NAG 1 E 1 NAG A 607 NAG 
3 n E NAG 2 E 2 NAG A 608 NAG 
3 n E FUC 3 E 3 FUC A 609 FUC 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 65 A CYS 65 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 A SG CYS 252 A CYS 252 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf3 A SG CYS 400 A CYS 400 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
covale ? covale1 A ND2 ASN 57 A ASN 57 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale2 A ND2 ASN 106 A ASN 106 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale3 A ND2 ASN 241 A ASN 241 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale4 A ND2 ASN 256 A ASN 256 1_555 F C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale5 A ND2 ASN 341 A ASN 341 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale6 A ND2 ASN 485 A ASN 485 1_555 G C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale7 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale8 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? 
covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale10 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale11 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale12 E O6 NAG . E NAG 1 1_555 E C1 FUC . E FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 380 n n 
S O2 SO4 doub 381 n n 
S O3 SO4 sing 382 n n 
S O4 SO4 sing 383 n n 
#
_atom_sites.entry_id                     7QBQ 
_atom_sites.fract_transf_matrix[1][1]    0.006468 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006468 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007861 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 NAG A 1 601 610 NAG NAG . 
G 4 NAG A 1 602 611 NAG NAG . 
H 5 AI0 A 1 603 613 AI0 LIG . 
I 5 AI0 A 1 604 614 AI0 LIG . 
J 6 SO4 A 1 605 1 SO4 SO4 . 
K 6 SO4 A 1 606 2 SO4 SO4 . 
L 6 SO4 A 1 607 3 SO4 SO4 . 
M 6 SO4 A 1 608 4 SO4 SO4 . 
N 6 SO4 A 1 609 5 SO4 SO4 . 
O 7 CL A 1 610 1 CL CL . 
P 7 CL A 1 611 2 CL CL . 
Q 7 CL A 1 612 3 CL CL . 
R 8 HOH A 1 701 39 HOH HOH . 
R 8 HOH A 2 702 43 HOH HOH . 
R 8 HOH A 3 703 74 HOH HOH . 
R 8 HOH A 4 704 2 HOH HOH . 
R 8 HOH A 5 705 82 HOH HOH . 
R 8 HOH A 6 706 23 HOH HOH . 
R 8 HOH A 7 707 92 HOH HOH . 
R 8 HOH A 8 708 54 HOH HOH . 
R 8 HOH A 9 709 42 HOH HOH . 
R 8 HOH A 10 710 91 HOH HOH . 
R 8 HOH A 11 711 51 HOH HOH . 
R 8 HOH A 12 712 19 HOH HOH . 
R 8 HOH A 13 713 38 HOH HOH . 
R 8 HOH A 14 714 22 HOH HOH . 
R 8 HOH A 15 715 62 HOH HOH . 
R 8 HOH A 16 716 30 HOH HOH . 
R 8 HOH A 17 717 15 HOH HOH . 
R 8 HOH A 18 718 78 HOH HOH . 
R 8 HOH A 19 719 24 HOH HOH . 
R 8 HOH A 20 720 26 HOH HOH . 
R 8 HOH A 21 721 34 HOH HOH . 
R 8 HOH A 22 722 17 HOH HOH . 
R 8 HOH A 23 723 70 HOH HOH . 
R 8 HOH A 24 724 87 HOH HOH . 
R 8 HOH A 25 725 25 HOH HOH . 
R 8 HOH A 26 726 13 HOH HOH . 
R 8 HOH A 27 727 21 HOH HOH . 
R 8 HOH A 28 728 71 HOH HOH . 
R 8 HOH A 29 729 47 HOH HOH . 
R 8 HOH A 30 730 14 HOH HOH . 
R 8 HOH A 31 731 12 HOH HOH . 
R 8 HOH A 32 732 49 HOH HOH . 
R 8 HOH A 33 733 50 HOH HOH . 
R 8 HOH A 34 734 89 HOH HOH . 
R 8 HOH A 35 735 58 HOH HOH . 
R 8 HOH A 36 736 29 HOH HOH . 
R 8 HOH A 37 737 27 HOH HOH . 
R 8 HOH A 38 738 63 HOH HOH . 
R 8 HOH A 39 739 31 HOH HOH . 
R 8 HOH A 40 740 37 HOH HOH . 
R 8 HOH A 41 741 3 HOH HOH . 
R 8 HOH A 42 742 32 HOH HOH . 
R 8 HOH A 43 743 60 HOH HOH . 
R 8 HOH A 44 744 48 HOH HOH . 
R 8 HOH A 45 745 28 HOH HOH . 
R 8 HOH A 46 746 68 HOH HOH . 
R 8 HOH A 47 747 85 HOH HOH . 
R 8 HOH A 48 748 36 HOH HOH . 
R 8 HOH A 49 749 41 HOH HOH . 
R 8 HOH A 50 750 59 HOH HOH . 
R 8 HOH A 51 751 65 HOH HOH . 
R 8 HOH A 52 752 35 HOH HOH . 
R 8 HOH A 53 753 81 HOH HOH . 
R 8 HOH A 54 754 18 HOH HOH . 
R 8 HOH A 55 755 55 HOH HOH . 
R 8 HOH A 56 756 8 HOH HOH . 
R 8 HOH A 57 757 46 HOH HOH . 
R 8 HOH A 58 758 64 HOH HOH . 
R 8 HOH A 59 759 80 HOH HOH . 
R 8 HOH A 60 760 56 HOH HOH . 
R 8 HOH A 61 761 90 HOH HOH . 
R 8 HOH A 62 762 9 HOH HOH . 
R 8 HOH A 63 763 44 HOH HOH . 
R 8 HOH A 64 764 45 HOH HOH . 
R 8 HOH A 65 765 5 HOH HOH . 
R 8 HOH A 66 766 1 HOH HOH . 
R 8 HOH A 67 767 4 HOH HOH . 
R 8 HOH A 68 768 6 HOH HOH . 
R 8 HOH A 69 769 16 HOH HOH . 
R 8 HOH A 70 770 7 HOH HOH . 
R 8 HOH A 71 771 72 HOH HOH . 
R 8 HOH A 72 772 33 HOH HOH . 
R 8 HOH A 73 773 53 HOH HOH . 
R 8 HOH A 74 774 61 HOH HOH . 
R 8 HOH A 75 775 57 HOH HOH . 
R 8 HOH A 76 776 84 HOH HOH . 
R 8 HOH A 77 777 52 HOH HOH . 
R 8 HOH A 78 778 86 HOH HOH . 
R 8 HOH A 79 779 20 HOH HOH . 
R 8 HOH A 80 780 67 HOH HOH . 
R 8 HOH A 81 781 79 HOH HOH . 
R 8 HOH A 82 782 83 HOH HOH . 
R 8 HOH A 83 783 88 HOH HOH . 
R 8 HOH A 84 784 66 HOH HOH . 
R 8 HOH A 85 785 69 HOH HOH . 
R 8 HOH A 86 786 77 HOH HOH . 
R 8 HOH A 87 787 76 HOH HOH . 
R 8 HOH A 88 788 73 HOH HOH . 
R 8 HOH A 89 789 10 HOH HOH . 
R 8 HOH A 90 790 75 HOH HOH . 
R 8 HOH A 91 791 11 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . N 6 5.736 23.818 62.085 1 127.89 ? S SO4 609 A 1 
HETATM 2 O O1 SO4 . . . N 6 6 22.633 61.273 1 109.19 ? O1 SO4 609 A 1 
HETATM 3 O O2 SO4 . . . N 6 4.573 24.535 61.54 1 114.77 ? O2 SO4 609 A 1 
HETATM 4 O O3 SO4 . . . N 6 6.93 24.684 62.082 1 102.23 ? O3 SO4 609 A 1 
HETATM 5 O O4 SO4 . . . N 6 5.448 23.374 63.45 1 121.58 ? O4 SO4 609 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           5 
#