data_7QBS # _model_server_result.job_id WEIc3AMMhI70kfgAvditHg _model_server_result.datetime_utc '2024-11-01 09:41:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qbs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 7QBS # _exptl.entry_id 7QBS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7QBS _cell.length_a 119.29 _cell.length_b 119.29 _cell.length_c 68.56 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QBS _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 40 A CYS 15 1_555 C FE4 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc2 A SG CYS 44 A CYS 19 1_555 C FE2 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc3 A SG CYS 47 A CYS 22 1_555 C FE1 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc4 A SG CYS 60 A CYS 35 1_555 D FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc5 A SG CYS 63 A CYS 38 1_555 D FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc6 A SG CYS 70 A CYS 45 1_555 D FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc7 A SG CYS 73 A CYS 48 1_555 D FE FE . A FE 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc8 A O GLY 143 A GLY 118 1_555 G NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc9 A O PHE 146 A PHE 121 1_555 G NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc10 A OD1 ASP 181 A ASP 156 1_555 G NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? metalc ? metalc11 A O GLU 183 A GLU 158 1_555 G NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.112 ? metalc ? metalc12 A OG SER 187 A SER 162 1_555 G NA NA . A NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc13 C FE3 SF4 . A SF4 501 1_555 E OXT SAM . A SAM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc14 C FE3 SF4 . A SF4 501 1_555 E N SAM . A SAM 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc15 G NA NA . A NA 505 1_555 H O HOH . A HOH 669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 534 n n FE1 S3 SF4 sing 535 n n FE1 S4 SF4 sing 536 n n FE2 S1 SF4 sing 537 n n FE2 S3 SF4 sing 538 n n FE2 S4 SF4 sing 539 n n FE3 S1 SF4 sing 540 n n FE3 S2 SF4 sing 541 n n FE3 S4 SF4 sing 542 n n FE4 S1 SF4 sing 543 n n FE4 S2 SF4 sing 544 n n FE4 S3 SF4 sing 545 n n # _atom_sites.entry_id 7QBS _atom_sites.fract_transf_matrix[1][1] 0.008383 _atom_sites.fract_transf_matrix[1][2] 0.00484 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00968 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014586 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SF4 A 1 501 501 SF4 SF4 . D 4 FE A 1 502 502 FE FE . E 5 SAM A 1 503 503 SAM SAM . F 6 COB A 1 504 504 COB COB . G 7 NA A 1 505 505 NA NA . H 8 HOH A 1 601 614 HOH HOH . H 8 HOH A 2 602 706 HOH HOH . H 8 HOH A 3 603 609 HOH HOH . H 8 HOH A 4 604 739 HOH HOH . H 8 HOH A 5 605 601 HOH HOH . H 8 HOH A 6 606 754 HOH HOH . H 8 HOH A 7 607 794 HOH HOH . H 8 HOH A 8 608 650 HOH HOH . H 8 HOH A 9 609 779 HOH HOH . H 8 HOH A 10 610 712 HOH HOH . H 8 HOH A 11 611 621 HOH HOH . H 8 HOH A 12 612 777 HOH HOH . H 8 HOH A 13 613 767 HOH HOH . H 8 HOH A 14 614 665 HOH HOH . H 8 HOH A 15 615 610 HOH HOH . H 8 HOH A 16 616 604 HOH HOH . H 8 HOH A 17 617 632 HOH HOH . H 8 HOH A 18 618 695 HOH HOH . H 8 HOH A 19 619 765 HOH HOH . H 8 HOH A 20 620 717 HOH HOH . H 8 HOH A 21 621 730 HOH HOH . H 8 HOH A 22 622 733 HOH HOH . H 8 HOH A 23 623 728 HOH HOH . H 8 HOH A 24 624 750 HOH HOH . H 8 HOH A 25 625 771 HOH HOH . H 8 HOH A 26 626 700 HOH HOH . H 8 HOH A 27 627 735 HOH HOH . H 8 HOH A 28 628 774 HOH HOH . H 8 HOH A 29 629 677 HOH HOH . H 8 HOH A 30 630 636 HOH HOH . H 8 HOH A 31 631 749 HOH HOH . H 8 HOH A 32 632 726 HOH HOH . H 8 HOH A 33 633 696 HOH HOH . H 8 HOH A 34 634 732 HOH HOH . H 8 HOH A 35 635 681 HOH HOH . H 8 HOH A 36 636 738 HOH HOH . H 8 HOH A 37 637 691 HOH HOH . H 8 HOH A 38 638 718 HOH HOH . H 8 HOH A 39 639 625 HOH HOH . H 8 HOH A 40 640 663 HOH HOH . H 8 HOH A 41 641 628 HOH HOH . H 8 HOH A 42 642 616 HOH HOH . H 8 HOH A 43 643 667 HOH HOH . H 8 HOH A 44 644 639 HOH HOH . H 8 HOH A 45 645 740 HOH HOH . H 8 HOH A 46 646 741 HOH HOH . H 8 HOH A 47 647 810 HOH HOH . H 8 HOH A 48 648 725 HOH HOH . H 8 HOH A 49 649 617 HOH HOH . H 8 HOH A 50 650 642 HOH HOH . H 8 HOH A 51 651 731 HOH HOH . H 8 HOH A 52 652 708 HOH HOH . H 8 HOH A 53 653 605 HOH HOH . H 8 HOH A 54 654 775 HOH HOH . H 8 HOH A 55 655 675 HOH HOH . H 8 HOH A 56 656 698 HOH HOH . H 8 HOH A 57 657 603 HOH HOH . H 8 HOH A 58 658 798 HOH HOH . H 8 HOH A 59 659 645 HOH HOH . H 8 HOH A 60 660 727 HOH HOH . H 8 HOH A 61 661 723 HOH HOH . H 8 HOH A 62 662 629 HOH HOH . H 8 HOH A 63 663 647 HOH HOH . H 8 HOH A 64 664 660 HOH HOH . H 8 HOH A 65 665 719 HOH HOH . H 8 HOH A 66 666 672 HOH HOH . H 8 HOH A 67 667 792 HOH HOH . H 8 HOH A 68 668 679 HOH HOH . H 8 HOH A 69 669 606 HOH HOH . H 8 HOH A 70 670 661 HOH HOH . H 8 HOH A 71 671 791 HOH HOH . H 8 HOH A 72 672 623 HOH HOH . H 8 HOH A 73 673 737 HOH HOH . H 8 HOH A 74 674 764 HOH HOH . H 8 HOH A 75 675 620 HOH HOH . H 8 HOH A 76 676 781 HOH HOH . H 8 HOH A 77 677 602 HOH HOH . H 8 HOH A 78 678 702 HOH HOH . H 8 HOH A 79 679 736 HOH HOH . H 8 HOH A 80 680 778 HOH HOH . H 8 HOH A 81 681 751 HOH HOH . H 8 HOH A 82 682 714 HOH HOH . H 8 HOH A 83 683 658 HOH HOH . H 8 HOH A 84 684 710 HOH HOH . H 8 HOH A 85 685 709 HOH HOH . H 8 HOH A 86 686 762 HOH HOH . H 8 HOH A 87 687 703 HOH HOH . H 8 HOH A 88 688 613 HOH HOH . H 8 HOH A 89 689 753 HOH HOH . H 8 HOH A 90 690 683 HOH HOH . H 8 HOH A 91 691 705 HOH HOH . H 8 HOH A 92 692 720 HOH HOH . H 8 HOH A 93 693 635 HOH HOH . H 8 HOH A 94 694 619 HOH HOH . H 8 HOH A 95 695 785 HOH HOH . H 8 HOH A 96 696 699 HOH HOH . H 8 HOH A 97 697 801 HOH HOH . H 8 HOH A 98 698 773 HOH HOH . H 8 HOH A 99 699 615 HOH HOH . H 8 HOH A 100 700 721 HOH HOH . H 8 HOH A 101 701 643 HOH HOH . H 8 HOH A 102 702 608 HOH HOH . H 8 HOH A 103 703 701 HOH HOH . H 8 HOH A 104 704 668 HOH HOH . H 8 HOH A 105 705 799 HOH HOH . H 8 HOH A 106 706 630 HOH HOH . H 8 HOH A 107 707 612 HOH HOH . H 8 HOH A 108 708 722 HOH HOH . H 8 HOH A 109 709 780 HOH HOH . H 8 HOH A 110 710 682 HOH HOH . H 8 HOH A 111 711 713 HOH HOH . H 8 HOH A 112 712 626 HOH HOH . H 8 HOH A 113 713 795 HOH HOH . H 8 HOH A 114 714 748 HOH HOH . H 8 HOH A 115 715 669 HOH HOH . H 8 HOH A 116 716 796 HOH HOH . H 8 HOH A 117 717 800 HOH HOH . H 8 HOH A 118 718 711 HOH HOH . H 8 HOH A 119 719 640 HOH HOH . H 8 HOH A 120 720 624 HOH HOH . H 8 HOH A 121 721 618 HOH HOH . H 8 HOH A 122 722 729 HOH HOH . H 8 HOH A 123 723 790 HOH HOH . H 8 HOH A 124 724 766 HOH HOH . H 8 HOH A 125 725 716 HOH HOH . H 8 HOH A 126 726 646 HOH HOH . H 8 HOH A 127 727 697 HOH HOH . H 8 HOH A 128 728 724 HOH HOH . H 8 HOH A 129 729 644 HOH HOH . H 8 HOH A 130 730 707 HOH HOH . H 8 HOH A 131 731 776 HOH HOH . H 8 HOH A 132 732 657 HOH HOH . H 8 HOH A 133 733 678 HOH HOH . H 8 HOH A 134 734 693 HOH HOH . H 8 HOH A 135 735 772 HOH HOH . H 8 HOH A 136 736 652 HOH HOH . H 8 HOH A 137 737 752 HOH HOH . H 8 HOH A 138 738 756 HOH HOH . H 8 HOH A 139 739 649 HOH HOH . H 8 HOH A 140 740 670 HOH HOH . H 8 HOH A 141 741 715 HOH HOH . H 8 HOH A 142 742 809 HOH HOH . H 8 HOH A 143 743 769 HOH HOH . H 8 HOH A 144 744 673 HOH HOH . H 8 HOH A 145 745 680 HOH HOH . H 8 HOH A 146 746 704 HOH HOH . H 8 HOH A 147 747 664 HOH HOH . H 8 HOH A 148 748 755 HOH HOH . H 8 HOH A 149 749 686 HOH HOH . H 8 HOH A 150 750 744 HOH HOH . H 8 HOH A 151 751 631 HOH HOH . H 8 HOH A 152 752 770 HOH HOH . H 8 HOH A 153 753 763 HOH HOH . H 8 HOH A 154 754 759 HOH HOH . H 8 HOH A 155 755 666 HOH HOH . H 8 HOH A 156 756 634 HOH HOH . H 8 HOH A 157 757 690 HOH HOH . H 8 HOH A 158 758 633 HOH HOH . H 8 HOH A 159 759 803 HOH HOH . H 8 HOH A 160 760 627 HOH HOH . H 8 HOH A 161 761 656 HOH HOH . H 8 HOH A 162 762 648 HOH HOH . H 8 HOH A 163 763 747 HOH HOH . H 8 HOH A 164 764 789 HOH HOH . H 8 HOH A 165 765 689 HOH HOH . H 8 HOH A 166 766 637 HOH HOH . H 8 HOH A 167 767 783 HOH HOH . H 8 HOH A 168 768 684 HOH HOH . H 8 HOH A 169 769 734 HOH HOH . H 8 HOH A 170 770 687 HOH HOH . H 8 HOH A 171 771 805 HOH HOH . H 8 HOH A 172 772 807 HOH HOH . H 8 HOH A 173 773 662 HOH HOH . H 8 HOH A 174 774 676 HOH HOH . H 8 HOH A 175 775 804 HOH HOH . H 8 HOH A 176 776 685 HOH HOH . H 8 HOH A 177 777 746 HOH HOH . H 8 HOH A 178 778 611 HOH HOH . H 8 HOH A 179 779 757 HOH HOH . H 8 HOH A 180 780 761 HOH HOH . H 8 HOH A 181 781 692 HOH HOH . H 8 HOH A 182 782 797 HOH HOH . H 8 HOH A 183 783 655 HOH HOH . H 8 HOH A 184 784 638 HOH HOH . H 8 HOH A 185 785 651 HOH HOH . H 8 HOH A 186 786 659 HOH HOH . H 8 HOH A 187 787 694 HOH HOH . H 8 HOH A 188 788 654 HOH HOH . H 8 HOH A 189 789 622 HOH HOH . H 8 HOH A 190 790 788 HOH HOH . H 8 HOH A 191 791 641 HOH HOH . H 8 HOH A 192 792 782 HOH HOH . H 8 HOH A 193 793 671 HOH HOH . H 8 HOH A 194 794 745 HOH HOH . H 8 HOH A 195 795 786 HOH HOH . H 8 HOH A 196 796 674 HOH HOH . H 8 HOH A 197 797 688 HOH HOH . H 8 HOH A 198 798 760 HOH HOH . H 8 HOH A 199 799 793 HOH HOH . H 8 HOH A 200 800 784 HOH HOH . H 8 HOH A 201 801 743 HOH HOH . H 8 HOH A 202 802 802 HOH HOH . H 8 HOH A 203 803 787 HOH HOH . H 8 HOH A 204 804 742 HOH HOH . H 8 HOH A 205 805 806 HOH HOH . H 8 HOH A 206 806 808 HOH HOH . H 8 HOH A 207 807 758 HOH HOH . H 8 HOH A 208 808 768 HOH HOH . I 8 HOH B 1 101 653 HOH HOH . I 8 HOH B 2 102 607 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . C 3 -8.932 33.317 20.059 1 57.19 ? FE1 SF4 501 A 1 HETATM 2 FE FE2 SF4 . . . C 3 -8.122 31.588 22.02 1 57.84 ? FE2 SF4 501 A 1 HETATM 3 FE FE3 SF4 . . . C 3 -10.796 32.197 21.792 1 59.74 ? FE3 SF4 501 A 1 HETATM 4 FE FE4 SF4 . . . C 3 -9.051 34.093 22.751 1 57.35 ? FE4 SF4 501 A 1 HETATM 5 S S1 SF4 . . . C 3 -9.624 32.094 23.736 1 58.13 ? S1 SF4 501 A 1 HETATM 6 S S2 SF4 . . . C 3 -10.668 34.438 21.149 1 57.78 ? S2 SF4 501 A 1 HETATM 7 S S3 SF4 . . . C 3 -7.138 33.572 21.517 1 57.29 ? S3 SF4 501 A 1 HETATM 8 S S4 SF4 . . . C 3 -9.482 31.106 20.214 1 57.87 ? S4 SF4 501 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #