data_7QCB # _model_server_result.job_id FCH-ynQN_b5l-NpVHRQUXQ _model_server_result.datetime_utc '2024-10-18 18:17:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qcb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 7QCB # _exptl.entry_id 7QCB _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 275 n n N HN1 SAH sing 276 n n N HN2 SAH sing 277 n n CA CB SAH sing 278 n n CA C SAH sing 279 n n CA HA SAH sing 280 n n CB CG SAH sing 281 n n CB HB1 SAH sing 282 n n CB HB2 SAH sing 283 n n CG SD SAH sing 284 n n CG HG1 SAH sing 285 n n CG HG2 SAH sing 286 n n SD C5' SAH sing 287 n n C O SAH doub 288 n n C OXT SAH sing 289 n n OXT HXT SAH sing 290 n n C5' C4' SAH sing 291 n n C5' "H5'1" SAH sing 292 n n C5' "H5'2" SAH sing 293 n n C4' O4' SAH sing 294 n n C4' C3' SAH sing 295 n n C4' H4' SAH sing 296 n n O4' C1' SAH sing 297 n n C3' O3' SAH sing 298 n n C3' C2' SAH sing 299 n n C3' H3' SAH sing 300 n n O3' HO3' SAH sing 301 n n C2' O2' SAH sing 302 n n C2' C1' SAH sing 303 n n C2' H2' SAH sing 304 n n O2' HO2' SAH sing 305 n n C1' N9 SAH sing 306 n n C1' H1' SAH sing 307 n n N9 C8 SAH sing 308 n y N9 C4 SAH sing 309 n y C8 N7 SAH doub 310 n y C8 H8 SAH sing 311 n n N7 C5 SAH sing 312 n y C5 C6 SAH sing 313 n y C5 C4 SAH doub 314 n y C6 N6 SAH sing 315 n n C6 N1 SAH doub 316 n y N6 HN61 SAH sing 317 n n N6 HN62 SAH sing 318 n n N1 C2 SAH sing 319 n y C2 N3 SAH doub 320 n y C2 H2 SAH sing 321 n n N3 C4 SAH sing 322 n y # _atom_sites.entry_id 7QCB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id SAH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 300 _pdbx_nonpoly_scheme.auth_seq_num 300 _pdbx_nonpoly_scheme.pdb_mon_id SAH _pdbx_nonpoly_scheme.auth_mon_id SAH _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 1.789 4.887 -1.776 1 0 ? N SAH 300 A 1 HETATM 2 C CA SAH . . . B 2 0.885 5.808 -2.515 1 0 ? CA SAH 300 A 1 HETATM 3 C CB SAH . . . B 2 1.613 7.134 -2.809 1 0 ? CB SAH 300 A 1 HETATM 4 C CG SAH . . . B 2 3.133 7.047 -2.833 1 0 ? CG SAH 300 A 1 HETATM 5 S SD SAH . . . B 2 3.871 8.052 -4.142 1 0 ? SD SAH 300 A 1 HETATM 6 C C SAH . . . B 2 0.394 5.169 -3.81 1 0 ? C SAH 300 A 1 HETATM 7 O O SAH . . . B 2 0.295 3.924 -3.851 1 0 ? O SAH 300 A 1 HETATM 8 O OXT SAH . . . B 2 0.105 5.915 -4.769 1 0 ? OXT SAH 300 A 1 HETATM 9 C C5' SAH . . . B 2 3.685 6.977 -5.588 1 0 ? C5' SAH 300 A 1 HETATM 10 C C4' SAH . . . B 2 3.742 5.499 -5.275 1 0 ? C4' SAH 300 A 1 HETATM 11 O O4' SAH . . . B 2 3.869 4.784 -6.534 1 0 ? O4' SAH 300 A 1 HETATM 12 C C3' SAH . . . B 2 4.921 5.047 -4.411 1 0 ? C3' SAH 300 A 1 HETATM 13 O O3' SAH . . . B 2 4.525 4.073 -3.442 1 0 ? O3' SAH 300 A 1 HETATM 14 C C2' SAH . . . B 2 5.911 4.478 -5.42 1 0 ? C2' SAH 300 A 1 HETATM 15 O O2' SAH . . . B 2 6.655 3.413 -4.858 1 0 ? O2' SAH 300 A 1 HETATM 16 C C1' SAH . . . B 2 4.966 3.904 -6.468 1 0 ? C1' SAH 300 A 1 HETATM 17 N N9 SAH . . . B 2 5.548 3.786 -7.803 1 0 ? N9 SAH 300 A 1 HETATM 18 C C8 SAH . . . B 2 4.95 4.039 -9.012 1 0 ? C8 SAH 300 A 1 HETATM 19 N N7 SAH . . . B 2 5.719 3.794 -10.045 1 0 ? N7 SAH 300 A 1 HETATM 20 C C5 SAH . . . B 2 6.909 3.36 -9.476 1 0 ? C5 SAH 300 A 1 HETATM 21 C C6 SAH . . . B 2 8.125 2.938 -10.036 1 0 ? C6 SAH 300 A 1 HETATM 22 N N6 SAH . . . B 2 8.362 2.88 -11.347 1 0 ? N6 SAH 300 A 1 HETATM 23 N N1 SAH . . . B 2 9.109 2.568 -9.189 1 0 ? N1 SAH 300 A 1 HETATM 24 C C2 SAH . . . B 2 8.884 2.63 -7.875 1 0 ? C2 SAH 300 A 1 HETATM 25 N N3 SAH . . . B 2 7.785 3.008 -7.228 1 0 ? N3 SAH 300 A 1 HETATM 26 C C4 SAH . . . B 2 6.823 3.364 -8.096 1 0 ? C4 SAH 300 A 1 HETATM 27 H H2 SAH . . . B 2 9.721 2.334 -7.248 1 1.02 ? H2 SAH 300 A 1 HETATM 28 H HN1 SAH . . . B 2 2.639 4.738 -2.353 1 1.02 ? HN1 SAH 300 A 1 HETATM 29 H HN2 SAH . . . B 2 1.278 3.993 -1.632 1 1.02 ? HN2 SAH 300 A 1 HETATM 30 H HA SAH . . . B 2 0.03 6.014 -1.886 1 1.02 ? HA SAH 300 A 1 HETATM 31 H HB1 SAH . . . B 2 1.337 7.849 -2.05 1 1.02 ? HB1 SAH 300 A 1 HETATM 32 H HB2 SAH . . . B 2 1.285 7.505 -3.767 1 1.02 ? HB2 SAH 300 A 1 HETATM 33 H HG1 SAH . . . B 2 3.422 6.024 -2.971 1 1.02 ? HG1 SAH 300 A 1 HETATM 34 H HG2 SAH . . . B 2 3.51 7.396 -1.883 1 1.02 ? HG2 SAH 300 A 1 HETATM 35 H "H5'1" SAH . . . B 2 4.48 7.218 -6.295 1 1.02 ? "H5'1" SAH 300 A 1 HETATM 36 H "H5'2" SAH . . . B 2 2.724 7.199 -6.053 1 1.02 ? "H5'2" SAH 300 A 1 HETATM 37 H H4' SAH . . . B 2 2.836 5.247 -4.725 1 1.02 ? H4' SAH 300 A 1 HETATM 38 H H3' SAH . . . B 2 5.344 5.874 -3.842 1 1.02 ? H3' SAH 300 A 1 HETATM 39 H HO3' SAH . . . B 2 5.192 3.383 -3.44 1 0 ? HO3' SAH 300 A 1 HETATM 40 H H2' SAH . . . B 2 6.544 5.267 -5.831 1 1.02 ? H2' SAH 300 A 1 HETATM 41 H HO2' SAH . . . B 2 6.151 2.612 -5 1 0 ? HO2' SAH 300 A 1 HETATM 42 H H1' SAH . . . B 2 4.576 2.927 -6.179 1 1.02 ? H1' SAH 300 A 1 HETATM 43 H H8 SAH . . . B 2 3.939 4.407 -9.105 1 1.02 ? H8 SAH 300 A 1 HETATM 44 H HN61 SAH . . . B 2 7.645 3.147 -12.003 1 0 ? HN61 SAH 300 A 1 HETATM 45 H HN62 SAH . . . B 2 9.273 2.595 -11.678 1 0 ? HN62 SAH 300 A 1 HETATM 46 H HN3 SAH . . . B 2 2.021 5.334 -0.871 1 1.02 ? HN3 SAH 300 A 1 # _model_server_stats.io_time_ms 182 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 356 _model_server_stats.query_time_ms 6531 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 46 #