data_7QCH # _model_server_result.job_id bTHocR60U94aShxEvvNVcQ _model_server_result.datetime_utc '2024-11-08 11:44:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qch # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7QCH # _exptl.entry_id 7QCH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 255.294 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(3,5-dimetoxy-4-hydroxybenzyliden)thiosemicarbazone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7QCH _cell.length_a 83.65 _cell.length_b 83.65 _cell.length_c 134.166 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QCH _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 110 A ASN 110 1_555 A N CSO 111 A CSO 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C CSO 111 A CSO 111 1_555 A N TYR 112 A TYR 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? metalc ? metalc1 A SG CYS 189 A CYS 189 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc2 A SG CYS 192 A CYS 192 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc3 A SG CYS 224 A CYS 224 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc4 A SG CYS 226 A CYS 226 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? # _chem_comp.formula 'C10 H13 N3 O3 S' _chem_comp.formula_weight 255.294 _chem_comp.id A5I _chem_comp.mon_nstd_flag . _chem_comp.name N-(3,5-dimetoxy-4-hydroxybenzyliden)thiosemicarbazone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-[(E)-(3,5-dimethoxy-4-oxidanyl-phenyl)methylideneamino]thiourea # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 O A5I sing 1 n n O C2 A5I sing 2 n n O1 C1 A5I sing 3 n n C2 C1 A5I doub 4 n y C2 C3 A5I sing 5 n y C1 C A5I sing 6 n y C3 C4 A5I doub 7 n y C O2 A5I sing 8 n n C C5 A5I doub 9 n y C4 C5 A5I sing 10 n y C4 C6 A5I sing 11 n n O2 C9 A5I sing 12 n n C6 N A5I doub 13 e n N N1 A5I sing 14 n n N1 C7 A5I sing 15 n n N2 C7 A5I sing 16 n n C7 S A5I doub 17 n n N1 H3 A5I sing 18 n n C8 H8 A5I sing 19 n n C8 H6 A5I sing 20 n n C8 H7 A5I sing 21 n n N2 H4 A5I sing 22 n n N2 H5 A5I sing 23 n n C9 H12 A5I sing 24 n n C9 H10 A5I sing 25 n n C9 H11 A5I sing 26 n n O1 H9 A5I sing 27 n n C5 H1 A5I sing 28 n n C6 H2 A5I sing 29 n n C3 H A5I sing 30 n n # _atom_sites.entry_id 7QCH _atom_sites.fract_transf_matrix[1][1] 0.011955 _atom_sites.fract_transf_matrix[1][2] 0.006902 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013804 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A5I A 1 401 401 A5I XXX . C 3 GOL A 1 402 501 GOL GOL . D 3 GOL A 1 403 801 GOL GOL . E 4 ZN A 1 404 1 ZN ZN . F 5 PO4 A 1 405 1 PO4 PO4 . G 5 PO4 A 1 406 2 PO4 PO4 . H 5 PO4 A 1 407 3 PO4 PO4 . I 5 PO4 A 1 408 5 PO4 PO4 . J 5 PO4 A 1 409 6 PO4 PO4 . K 6 CL A 1 410 1 CL CL . L 7 HOH A 1 501 184 HOH HOH . L 7 HOH A 2 502 88 HOH HOH . L 7 HOH A 3 503 158 HOH HOH . L 7 HOH A 4 504 42 HOH HOH . L 7 HOH A 5 505 160 HOH HOH . L 7 HOH A 6 506 49 HOH HOH . L 7 HOH A 7 507 4 HOH HOH . L 7 HOH A 8 508 90 HOH HOH . L 7 HOH A 9 509 127 HOH HOH . L 7 HOH A 10 510 136 HOH HOH . L 7 HOH A 11 511 21 HOH HOH . L 7 HOH A 12 512 91 HOH HOH . L 7 HOH A 13 513 168 HOH HOH . L 7 HOH A 14 514 86 HOH HOH . L 7 HOH A 15 515 107 HOH HOH . L 7 HOH A 16 516 164 HOH HOH . L 7 HOH A 17 517 102 HOH HOH . L 7 HOH A 18 518 2 HOH HOH . L 7 HOH A 19 519 24 HOH HOH . L 7 HOH A 20 520 51 HOH HOH . L 7 HOH A 21 521 62 HOH HOH . L 7 HOH A 22 522 124 HOH HOH . L 7 HOH A 23 523 162 HOH HOH . L 7 HOH A 24 524 182 HOH HOH . L 7 HOH A 25 525 12 HOH HOH . L 7 HOH A 26 526 67 HOH HOH . L 7 HOH A 27 527 40 HOH HOH . L 7 HOH A 28 528 38 HOH HOH . L 7 HOH A 29 529 54 HOH HOH . L 7 HOH A 30 530 48 HOH HOH . L 7 HOH A 31 531 65 HOH HOH . L 7 HOH A 32 532 64 HOH HOH . L 7 HOH A 33 533 75 HOH HOH . L 7 HOH A 34 534 135 HOH HOH . L 7 HOH A 35 535 33 HOH HOH . L 7 HOH A 36 536 96 HOH HOH . L 7 HOH A 37 537 106 HOH HOH . L 7 HOH A 38 538 59 HOH HOH . L 7 HOH A 39 539 5 HOH HOH . L 7 HOH A 40 540 150 HOH HOH . L 7 HOH A 41 541 53 HOH HOH . L 7 HOH A 42 542 10 HOH HOH . L 7 HOH A 43 543 9 HOH HOH . L 7 HOH A 44 544 66 HOH HOH . L 7 HOH A 45 545 159 HOH HOH . L 7 HOH A 46 546 138 HOH HOH . L 7 HOH A 47 547 8 HOH HOH . L 7 HOH A 48 548 6 HOH HOH . L 7 HOH A 49 549 68 HOH HOH . L 7 HOH A 50 550 181 HOH HOH . L 7 HOH A 51 551 128 HOH HOH . L 7 HOH A 52 552 44 HOH HOH . L 7 HOH A 53 553 103 HOH HOH . L 7 HOH A 54 554 83 HOH HOH . L 7 HOH A 55 555 18 HOH HOH . L 7 HOH A 56 556 31 HOH HOH . L 7 HOH A 57 557 47 HOH HOH . L 7 HOH A 58 558 45 HOH HOH . L 7 HOH A 59 559 76 HOH HOH . L 7 HOH A 60 560 137 HOH HOH . L 7 HOH A 61 561 63 HOH HOH . L 7 HOH A 62 562 81 HOH HOH . L 7 HOH A 63 563 170 HOH HOH . L 7 HOH A 64 564 11 HOH HOH . L 7 HOH A 65 565 89 HOH HOH . L 7 HOH A 66 566 3 HOH HOH . L 7 HOH A 67 567 35 HOH HOH . L 7 HOH A 68 568 27 HOH HOH . L 7 HOH A 69 569 17 HOH HOH . L 7 HOH A 70 570 19 HOH HOH . L 7 HOH A 71 571 29 HOH HOH . L 7 HOH A 72 572 133 HOH HOH . L 7 HOH A 73 573 116 HOH HOH . L 7 HOH A 74 574 87 HOH HOH . L 7 HOH A 75 575 41 HOH HOH . L 7 HOH A 76 576 108 HOH HOH . L 7 HOH A 77 577 13 HOH HOH . L 7 HOH A 78 578 183 HOH HOH . L 7 HOH A 79 579 46 HOH HOH . L 7 HOH A 80 580 56 HOH HOH . L 7 HOH A 81 581 69 HOH HOH . L 7 HOH A 82 582 95 HOH HOH . L 7 HOH A 83 583 114 HOH HOH . L 7 HOH A 84 584 78 HOH HOH . L 7 HOH A 85 585 152 HOH HOH . L 7 HOH A 86 586 60 HOH HOH . L 7 HOH A 87 587 36 HOH HOH . L 7 HOH A 88 588 28 HOH HOH . L 7 HOH A 89 589 93 HOH HOH . L 7 HOH A 90 590 55 HOH HOH . L 7 HOH A 91 591 132 HOH HOH . L 7 HOH A 92 592 7 HOH HOH . L 7 HOH A 93 593 20 HOH HOH . L 7 HOH A 94 594 112 HOH HOH . L 7 HOH A 95 595 58 HOH HOH . L 7 HOH A 96 596 79 HOH HOH . L 7 HOH A 97 597 16 HOH HOH . L 7 HOH A 98 598 74 HOH HOH . L 7 HOH A 99 599 94 HOH HOH . L 7 HOH A 100 600 115 HOH HOH . L 7 HOH A 101 601 153 HOH HOH . L 7 HOH A 102 602 50 HOH HOH . L 7 HOH A 103 603 105 HOH HOH . L 7 HOH A 104 604 143 HOH HOH . L 7 HOH A 105 605 61 HOH HOH . L 7 HOH A 106 606 167 HOH HOH . L 7 HOH A 107 607 166 HOH HOH . L 7 HOH A 108 608 134 HOH HOH . L 7 HOH A 109 609 26 HOH HOH . L 7 HOH A 110 610 101 HOH HOH . L 7 HOH A 111 611 117 HOH HOH . L 7 HOH A 112 612 92 HOH HOH . L 7 HOH A 113 613 23 HOH HOH . L 7 HOH A 114 614 70 HOH HOH . L 7 HOH A 115 615 142 HOH HOH . L 7 HOH A 116 616 154 HOH HOH . L 7 HOH A 117 617 80 HOH HOH . L 7 HOH A 118 618 22 HOH HOH . L 7 HOH A 119 619 144 HOH HOH . L 7 HOH A 120 620 37 HOH HOH . L 7 HOH A 121 621 113 HOH HOH . L 7 HOH A 122 622 39 HOH HOH . L 7 HOH A 123 623 178 HOH HOH . L 7 HOH A 124 624 57 HOH HOH . L 7 HOH A 125 625 25 HOH HOH . L 7 HOH A 126 626 14 HOH HOH . L 7 HOH A 127 627 171 HOH HOH . L 7 HOH A 128 628 175 HOH HOH . L 7 HOH A 129 629 118 HOH HOH . L 7 HOH A 130 630 180 HOH HOH . L 7 HOH A 131 631 173 HOH HOH . L 7 HOH A 132 632 30 HOH HOH . L 7 HOH A 133 633 141 HOH HOH . L 7 HOH A 134 634 52 HOH HOH . L 7 HOH A 135 635 104 HOH HOH . L 7 HOH A 136 636 172 HOH HOH . L 7 HOH A 137 637 15 HOH HOH . L 7 HOH A 138 638 157 HOH HOH . L 7 HOH A 139 639 176 HOH HOH . L 7 HOH A 140 640 85 HOH HOH . L 7 HOH A 141 641 174 HOH HOH . L 7 HOH A 142 642 98 HOH HOH . L 7 HOH A 143 643 126 HOH HOH . L 7 HOH A 144 644 163 HOH HOH . L 7 HOH A 145 645 177 HOH HOH . L 7 HOH A 146 646 130 HOH HOH . L 7 HOH A 147 647 121 HOH HOH . L 7 HOH A 148 648 72 HOH HOH . L 7 HOH A 149 649 43 HOH HOH . L 7 HOH A 150 650 73 HOH HOH . L 7 HOH A 151 651 119 HOH HOH . L 7 HOH A 152 652 71 HOH HOH . L 7 HOH A 153 653 139 HOH HOH . L 7 HOH A 154 654 100 HOH HOH . L 7 HOH A 155 655 122 HOH HOH . L 7 HOH A 156 656 110 HOH HOH . L 7 HOH A 157 657 82 HOH HOH . L 7 HOH A 158 658 84 HOH HOH . L 7 HOH A 159 659 123 HOH HOH . L 7 HOH A 160 660 129 HOH HOH . L 7 HOH A 161 661 169 HOH HOH . L 7 HOH A 162 662 109 HOH HOH . L 7 HOH A 163 663 99 HOH HOH . L 7 HOH A 164 664 146 HOH HOH . L 7 HOH A 165 665 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A5I . . . B 2 59.014 31.603 -6.637 1 55.31 ? N1 A5I 401 A 1 HETATM 2 C C7 A5I . . . B 2 60.097 31.924 -5.889 1 64.42 ? C7 A5I 401 A 1 HETATM 3 C C8 A5I . . . B 2 54.782 32.024 -12.35 1 63.29 ? C8 A5I 401 A 1 HETATM 4 N N2 A5I . . . B 2 60.493 33.246 -5.89 1 58.33 ? N2 A5I 401 A 1 HETATM 5 C C9 A5I . . . B 2 56.268 37.135 -7.54 1 52.93 ? C9 A5I 401 A 1 HETATM 6 O O1 A5I . . . B 2 54.686 36.057 -11.255 1 46 ? O1 A5I 401 A 1 HETATM 7 C C1 A5I . . . B 2 55.43 35.166 -10.56 1 46.78 ? C1 A5I 401 A 1 HETATM 8 C C5 A5I . . . B 2 56.772 34.617 -8.597 1 46.21 ? C5 A5I 401 A 1 HETATM 9 C C6 A5I . . . B 2 57.66 32.304 -8.295 1 46.64 ? C6 A5I 401 A 1 HETATM 10 C C4 A5I . . . B 2 56.906 33.301 -9.047 1 51.39 ? C4 A5I 401 A 1 HETATM 11 C C3 A5I . . . B 2 56.312 32.918 -10.259 1 48.94 ? C3 A5I 401 A 1 HETATM 12 C C2 A5I . . . B 2 55.599 33.822 -10.981 1 44.06 ? C2 A5I 401 A 1 HETATM 13 N N A5I . . . B 2 58.252 32.597 -7.201 1 51.54 ? N A5I 401 A 1 HETATM 14 C C A5I . . . B 2 56.047 35.528 -9.322 1 48.04 ? C A5I 401 A 1 HETATM 15 O O A5I . . . B 2 54.87 33.452 -12.11 1 52.24 ? O A5I 401 A 1 HETATM 16 O O2 A5I . . . B 2 55.805 36.818 -8.891 1 52.36 ? O2 A5I 401 A 1 HETATM 17 S S A5I . . . B 2 60.882 30.679 -5.048 1 60.13 ? S A5I 401 A 1 HETATM 18 H H3 A5I . . . B 2 58.82 30.612 -6.742 1 66.37 ? H3 A5I 401 A 1 HETATM 19 H H8 A5I . . . B 2 54.179 31.779 -13.224 1 75.95 ? H8 A5I 401 A 1 HETATM 20 H H6 A5I . . . B 2 54.336 31.482 -11.518 1 75.95 ? H6 A5I 401 A 1 HETATM 21 H H7 A5I . . . B 2 55.755 31.564 -12.52 1 75.95 ? H7 A5I 401 A 1 HETATM 22 H H4 A5I . . . B 2 60.05 34.005 -6.398 1 69.99 ? H4 A5I 401 A 1 HETATM 23 H H5 A5I . . . B 2 61.28 33.638 -5.383 1 69.99 ? H5 A5I 401 A 1 HETATM 24 H H12 A5I . . . B 2 56.123 38.181 -7.275 1 63.52 ? H12 A5I 401 A 1 HETATM 25 H H10 A5I . . . B 2 57.33 36.939 -7.397 1 63.52 ? H10 A5I 401 A 1 HETATM 26 H H11 A5I . . . B 2 55.756 36.561 -6.769 1 63.52 ? H11 A5I 401 A 1 HETATM 27 H H9 A5I . . . B 2 55.319 36.561 -11.831 1 55.2 ? H9 A5I 401 A 1 HETATM 28 H H1 A5I . . . B 2 57.253 34.902 -7.662 1 55.45 ? H1 A5I 401 A 1 HETATM 29 H H2 A5I . . . B 2 57.653 31.322 -8.764 1 55.97 ? H2 A5I 401 A 1 HETATM 30 H H A5I . . . B 2 56.439 31.891 -10.597 1 58.73 ? H A5I 401 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 30 #