data_7QCH
#
_model_server_result.job_id            BfSvDuVtqRTlE_psWmS4Hw 
_model_server_result.datetime_utc      '2024-11-08 11:39:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7qch 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    7QCH 
#
_exptl.entry_id    7QCH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7QCH 
_cell.length_a            83.65 
_cell.length_b            83.65 
_cell.length_c            134.166 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7QCH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    'P 32 2"' 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASN 110 A ASN 110 1_555 A N CSO 111 A CSO 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A C CSO 111 A CSO 111 1_555 A N TYR 112 A TYR 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
metalc ? metalc1 A SG CYS 189 A CYS 189 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? 
metalc ? metalc2 A SG CYS 192 A CYS 192 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? 
metalc ? metalc3 A SG CYS 224 A CYS 224 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? 
metalc ? metalc4 A SG CYS 226 A CYS 226 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 173 n n 
C1 C2 GOL sing 174 n n 
C1 H11 GOL sing 175 n n 
C1 H12 GOL sing 176 n n 
O1 HO1 GOL sing 177 n n 
C2 O2 GOL sing 178 n n 
C2 C3 GOL sing 179 n n 
C2 H2 GOL sing 180 n n 
O2 HO2 GOL sing 181 n n 
C3 O3 GOL sing 182 n n 
C3 H31 GOL sing 183 n n 
C3 H32 GOL sing 184 n n 
O3 HO3 GOL sing 185 n n 
#
_atom_sites.entry_id                     7QCH 
_atom_sites.fract_transf_matrix[1][1]    0.011955 
_atom_sites.fract_transf_matrix[1][2]    0.006902 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013804 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007453 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 A5I A 1 401 401 A5I XXX . 
C 3 GOL A 1 402 501 GOL GOL . 
D 3 GOL A 1 403 801 GOL GOL . 
E 4 ZN A 1 404 1 ZN ZN . 
F 5 PO4 A 1 405 1 PO4 PO4 . 
G 5 PO4 A 1 406 2 PO4 PO4 . 
H 5 PO4 A 1 407 3 PO4 PO4 . 
I 5 PO4 A 1 408 5 PO4 PO4 . 
J 5 PO4 A 1 409 6 PO4 PO4 . 
K 6 CL A 1 410 1 CL CL . 
L 7 HOH A 1 501 184 HOH HOH . 
L 7 HOH A 2 502 88 HOH HOH . 
L 7 HOH A 3 503 158 HOH HOH . 
L 7 HOH A 4 504 42 HOH HOH . 
L 7 HOH A 5 505 160 HOH HOH . 
L 7 HOH A 6 506 49 HOH HOH . 
L 7 HOH A 7 507 4 HOH HOH . 
L 7 HOH A 8 508 90 HOH HOH . 
L 7 HOH A 9 509 127 HOH HOH . 
L 7 HOH A 10 510 136 HOH HOH . 
L 7 HOH A 11 511 21 HOH HOH . 
L 7 HOH A 12 512 91 HOH HOH . 
L 7 HOH A 13 513 168 HOH HOH . 
L 7 HOH A 14 514 86 HOH HOH . 
L 7 HOH A 15 515 107 HOH HOH . 
L 7 HOH A 16 516 164 HOH HOH . 
L 7 HOH A 17 517 102 HOH HOH . 
L 7 HOH A 18 518 2 HOH HOH . 
L 7 HOH A 19 519 24 HOH HOH . 
L 7 HOH A 20 520 51 HOH HOH . 
L 7 HOH A 21 521 62 HOH HOH . 
L 7 HOH A 22 522 124 HOH HOH . 
L 7 HOH A 23 523 162 HOH HOH . 
L 7 HOH A 24 524 182 HOH HOH . 
L 7 HOH A 25 525 12 HOH HOH . 
L 7 HOH A 26 526 67 HOH HOH . 
L 7 HOH A 27 527 40 HOH HOH . 
L 7 HOH A 28 528 38 HOH HOH . 
L 7 HOH A 29 529 54 HOH HOH . 
L 7 HOH A 30 530 48 HOH HOH . 
L 7 HOH A 31 531 65 HOH HOH . 
L 7 HOH A 32 532 64 HOH HOH . 
L 7 HOH A 33 533 75 HOH HOH . 
L 7 HOH A 34 534 135 HOH HOH . 
L 7 HOH A 35 535 33 HOH HOH . 
L 7 HOH A 36 536 96 HOH HOH . 
L 7 HOH A 37 537 106 HOH HOH . 
L 7 HOH A 38 538 59 HOH HOH . 
L 7 HOH A 39 539 5 HOH HOH . 
L 7 HOH A 40 540 150 HOH HOH . 
L 7 HOH A 41 541 53 HOH HOH . 
L 7 HOH A 42 542 10 HOH HOH . 
L 7 HOH A 43 543 9 HOH HOH . 
L 7 HOH A 44 544 66 HOH HOH . 
L 7 HOH A 45 545 159 HOH HOH . 
L 7 HOH A 46 546 138 HOH HOH . 
L 7 HOH A 47 547 8 HOH HOH . 
L 7 HOH A 48 548 6 HOH HOH . 
L 7 HOH A 49 549 68 HOH HOH . 
L 7 HOH A 50 550 181 HOH HOH . 
L 7 HOH A 51 551 128 HOH HOH . 
L 7 HOH A 52 552 44 HOH HOH . 
L 7 HOH A 53 553 103 HOH HOH . 
L 7 HOH A 54 554 83 HOH HOH . 
L 7 HOH A 55 555 18 HOH HOH . 
L 7 HOH A 56 556 31 HOH HOH . 
L 7 HOH A 57 557 47 HOH HOH . 
L 7 HOH A 58 558 45 HOH HOH . 
L 7 HOH A 59 559 76 HOH HOH . 
L 7 HOH A 60 560 137 HOH HOH . 
L 7 HOH A 61 561 63 HOH HOH . 
L 7 HOH A 62 562 81 HOH HOH . 
L 7 HOH A 63 563 170 HOH HOH . 
L 7 HOH A 64 564 11 HOH HOH . 
L 7 HOH A 65 565 89 HOH HOH . 
L 7 HOH A 66 566 3 HOH HOH . 
L 7 HOH A 67 567 35 HOH HOH . 
L 7 HOH A 68 568 27 HOH HOH . 
L 7 HOH A 69 569 17 HOH HOH . 
L 7 HOH A 70 570 19 HOH HOH . 
L 7 HOH A 71 571 29 HOH HOH . 
L 7 HOH A 72 572 133 HOH HOH . 
L 7 HOH A 73 573 116 HOH HOH . 
L 7 HOH A 74 574 87 HOH HOH . 
L 7 HOH A 75 575 41 HOH HOH . 
L 7 HOH A 76 576 108 HOH HOH . 
L 7 HOH A 77 577 13 HOH HOH . 
L 7 HOH A 78 578 183 HOH HOH . 
L 7 HOH A 79 579 46 HOH HOH . 
L 7 HOH A 80 580 56 HOH HOH . 
L 7 HOH A 81 581 69 HOH HOH . 
L 7 HOH A 82 582 95 HOH HOH . 
L 7 HOH A 83 583 114 HOH HOH . 
L 7 HOH A 84 584 78 HOH HOH . 
L 7 HOH A 85 585 152 HOH HOH . 
L 7 HOH A 86 586 60 HOH HOH . 
L 7 HOH A 87 587 36 HOH HOH . 
L 7 HOH A 88 588 28 HOH HOH . 
L 7 HOH A 89 589 93 HOH HOH . 
L 7 HOH A 90 590 55 HOH HOH . 
L 7 HOH A 91 591 132 HOH HOH . 
L 7 HOH A 92 592 7 HOH HOH . 
L 7 HOH A 93 593 20 HOH HOH . 
L 7 HOH A 94 594 112 HOH HOH . 
L 7 HOH A 95 595 58 HOH HOH . 
L 7 HOH A 96 596 79 HOH HOH . 
L 7 HOH A 97 597 16 HOH HOH . 
L 7 HOH A 98 598 74 HOH HOH . 
L 7 HOH A 99 599 94 HOH HOH . 
L 7 HOH A 100 600 115 HOH HOH . 
L 7 HOH A 101 601 153 HOH HOH . 
L 7 HOH A 102 602 50 HOH HOH . 
L 7 HOH A 103 603 105 HOH HOH . 
L 7 HOH A 104 604 143 HOH HOH . 
L 7 HOH A 105 605 61 HOH HOH . 
L 7 HOH A 106 606 167 HOH HOH . 
L 7 HOH A 107 607 166 HOH HOH . 
L 7 HOH A 108 608 134 HOH HOH . 
L 7 HOH A 109 609 26 HOH HOH . 
L 7 HOH A 110 610 101 HOH HOH . 
L 7 HOH A 111 611 117 HOH HOH . 
L 7 HOH A 112 612 92 HOH HOH . 
L 7 HOH A 113 613 23 HOH HOH . 
L 7 HOH A 114 614 70 HOH HOH . 
L 7 HOH A 115 615 142 HOH HOH . 
L 7 HOH A 116 616 154 HOH HOH . 
L 7 HOH A 117 617 80 HOH HOH . 
L 7 HOH A 118 618 22 HOH HOH . 
L 7 HOH A 119 619 144 HOH HOH . 
L 7 HOH A 120 620 37 HOH HOH . 
L 7 HOH A 121 621 113 HOH HOH . 
L 7 HOH A 122 622 39 HOH HOH . 
L 7 HOH A 123 623 178 HOH HOH . 
L 7 HOH A 124 624 57 HOH HOH . 
L 7 HOH A 125 625 25 HOH HOH . 
L 7 HOH A 126 626 14 HOH HOH . 
L 7 HOH A 127 627 171 HOH HOH . 
L 7 HOH A 128 628 175 HOH HOH . 
L 7 HOH A 129 629 118 HOH HOH . 
L 7 HOH A 130 630 180 HOH HOH . 
L 7 HOH A 131 631 173 HOH HOH . 
L 7 HOH A 132 632 30 HOH HOH . 
L 7 HOH A 133 633 141 HOH HOH . 
L 7 HOH A 134 634 52 HOH HOH . 
L 7 HOH A 135 635 104 HOH HOH . 
L 7 HOH A 136 636 172 HOH HOH . 
L 7 HOH A 137 637 15 HOH HOH . 
L 7 HOH A 138 638 157 HOH HOH . 
L 7 HOH A 139 639 176 HOH HOH . 
L 7 HOH A 140 640 85 HOH HOH . 
L 7 HOH A 141 641 174 HOH HOH . 
L 7 HOH A 142 642 98 HOH HOH . 
L 7 HOH A 143 643 126 HOH HOH . 
L 7 HOH A 144 644 163 HOH HOH . 
L 7 HOH A 145 645 177 HOH HOH . 
L 7 HOH A 146 646 130 HOH HOH . 
L 7 HOH A 147 647 121 HOH HOH . 
L 7 HOH A 148 648 72 HOH HOH . 
L 7 HOH A 149 649 43 HOH HOH . 
L 7 HOH A 150 650 73 HOH HOH . 
L 7 HOH A 151 651 119 HOH HOH . 
L 7 HOH A 152 652 71 HOH HOH . 
L 7 HOH A 153 653 139 HOH HOH . 
L 7 HOH A 154 654 100 HOH HOH . 
L 7 HOH A 155 655 122 HOH HOH . 
L 7 HOH A 156 656 110 HOH HOH . 
L 7 HOH A 157 657 82 HOH HOH . 
L 7 HOH A 158 658 84 HOH HOH . 
L 7 HOH A 159 659 123 HOH HOH . 
L 7 HOH A 160 660 129 HOH HOH . 
L 7 HOH A 161 661 169 HOH HOH . 
L 7 HOH A 162 662 109 HOH HOH . 
L 7 HOH A 163 663 99 HOH HOH . 
L 7 HOH A 164 664 146 HOH HOH . 
L 7 HOH A 165 665 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 48.09 29.075 2.077 1 67.16 ? C1 GOL 403 A 1 
HETATM 2 O O1 GOL . . . D 3 49.106 28.55 2.942 1 74.1 ? O1 GOL 403 A 1 
HETATM 3 C C2 GOL . . . D 3 48.584 30.44 1.693 1 83.74 ? C2 GOL 403 A 1 
HETATM 4 O O2 GOL . . . D 3 49.683 30.376 0.792 1 76.36 ? O2 GOL 403 A 1 
HETATM 5 C C3 GOL . . . D 3 47.429 31.231 0.977 1 77.06 ? C3 GOL 403 A 1 
HETATM 6 O O3 GOL . . . D 3 48.073 32.105 0.02 1 70.69 ? O3 GOL 403 A 1 
HETATM 7 H H11 GOL . . . D 3 47.95 28.537 1.282 1 80.59 ? H11 GOL 403 A 1 
HETATM 8 H H12 GOL . . . D 3 47.223 29.145 2.506 1 80.59 ? H12 GOL 403 A 1 
HETATM 9 H HO1 GOL . . . D 3 48.934 27.726 3.047 1 88.92 ? HO1 GOL 403 A 1 
HETATM 10 H H2 GOL . . . D 3 48.847 30.871 2.521 1 100.49 ? H2 GOL 403 A 1 
HETATM 11 H HO2 GOL . . . D 3 49.449 29.843 0.126 1 91.64 ? HO2 GOL 403 A 1 
HETATM 12 H H31 GOL . . . D 3 46.815 30.599 0.573 1 92.47 ? H31 GOL 403 A 1 
HETATM 13 H H32 GOL . . . D 3 46.908 31.705 1.644 1 92.47 ? H32 GOL 403 A 1 
HETATM 14 H HO3 GOL . . . D 3 47.46 32.488 -0.451 1 84.83 ? HO3 GOL 403 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#