data_7QDL
#
_model_server_result.job_id            YJP2Yti7d-m7HpK8zC7f_A 
_model_server_result.datetime_utc      '2024-10-19 03:41:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7qdl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":204}' 
#
_entry.id    7QDL 
#
_exptl.entry_id    7QDL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7QDL 
_cell.length_a            43.222 
_cell.length_b            48.995 
_cell.length_c            60.865 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7QDL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 128 n n 
C1 C2 EDO sing 129 n n 
C1 H11 EDO sing 130 n n 
C1 H12 EDO sing 131 n n 
O1 HO1 EDO sing 132 n n 
C2 O2 EDO sing 133 n n 
C2 H21 EDO sing 134 n n 
C2 H22 EDO sing 135 n n 
O2 HO2 EDO sing 136 n n 
#
_atom_sites.entry_id                     7QDL 
_atom_sites.fract_transf_matrix[1][1]    0.023136 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02041 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01643 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AKQ AAA 1 201 1 AKQ LIG . 
C 3 EDO AAA 1 202 1 EDO EDO . 
D 3 EDO AAA 1 203 2 EDO EDO . 
E 3 EDO AAA 1 204 3 EDO EDO . 
F 4 HOH AAA 1 301 105 HOH HOH . 
F 4 HOH AAA 2 302 84 HOH HOH . 
F 4 HOH AAA 3 303 75 HOH HOH . 
F 4 HOH AAA 4 304 95 HOH HOH . 
F 4 HOH AAA 5 305 144 HOH HOH . 
F 4 HOH AAA 6 306 191 HOH HOH . 
F 4 HOH AAA 7 307 159 HOH HOH . 
F 4 HOH AAA 8 308 131 HOH HOH . 
F 4 HOH AAA 9 309 60 HOH HOH . 
F 4 HOH AAA 10 310 25 HOH HOH . 
F 4 HOH AAA 11 311 64 HOH HOH . 
F 4 HOH AAA 12 312 132 HOH HOH . 
F 4 HOH AAA 13 313 38 HOH HOH . 
F 4 HOH AAA 14 314 41 HOH HOH . 
F 4 HOH AAA 15 315 123 HOH HOH . 
F 4 HOH AAA 16 316 30 HOH HOH . 
F 4 HOH AAA 17 317 142 HOH HOH . 
F 4 HOH AAA 18 318 152 HOH HOH . 
F 4 HOH AAA 19 319 189 HOH HOH . 
F 4 HOH AAA 20 320 165 HOH HOH . 
F 4 HOH AAA 21 321 173 HOH HOH . 
F 4 HOH AAA 22 322 21 HOH HOH . 
F 4 HOH AAA 23 323 61 HOH HOH . 
F 4 HOH AAA 24 324 73 HOH HOH . 
F 4 HOH AAA 25 325 8 HOH HOH . 
F 4 HOH AAA 26 326 18 HOH HOH . 
F 4 HOH AAA 27 327 126 HOH HOH . 
F 4 HOH AAA 28 328 183 HOH HOH . 
F 4 HOH AAA 29 329 20 HOH HOH . 
F 4 HOH AAA 30 330 47 HOH HOH . 
F 4 HOH AAA 31 331 86 HOH HOH . 
F 4 HOH AAA 32 332 26 HOH HOH . 
F 4 HOH AAA 33 333 125 HOH HOH . 
F 4 HOH AAA 34 334 11 HOH HOH . 
F 4 HOH AAA 35 335 92 HOH HOH . 
F 4 HOH AAA 36 336 108 HOH HOH . 
F 4 HOH AAA 37 337 74 HOH HOH . 
F 4 HOH AAA 38 338 35 HOH HOH . 
F 4 HOH AAA 39 339 119 HOH HOH . 
F 4 HOH AAA 40 340 1 HOH HOH . 
F 4 HOH AAA 41 341 170 HOH HOH . 
F 4 HOH AAA 42 342 99 HOH HOH . 
F 4 HOH AAA 43 343 164 HOH HOH . 
F 4 HOH AAA 44 344 130 HOH HOH . 
F 4 HOH AAA 45 345 178 HOH HOH . 
F 4 HOH AAA 46 346 40 HOH HOH . 
F 4 HOH AAA 47 347 23 HOH HOH . 
F 4 HOH AAA 48 348 80 HOH HOH . 
F 4 HOH AAA 49 349 188 HOH HOH . 
F 4 HOH AAA 50 350 28 HOH HOH . 
F 4 HOH AAA 51 351 176 HOH HOH . 
F 4 HOH AAA 52 352 177 HOH HOH . 
F 4 HOH AAA 53 353 34 HOH HOH . 
F 4 HOH AAA 54 354 56 HOH HOH . 
F 4 HOH AAA 55 355 3 HOH HOH . 
F 4 HOH AAA 56 356 22 HOH HOH . 
F 4 HOH AAA 57 357 24 HOH HOH . 
F 4 HOH AAA 58 358 50 HOH HOH . 
F 4 HOH AAA 59 359 91 HOH HOH . 
F 4 HOH AAA 60 360 7 HOH HOH . 
F 4 HOH AAA 61 361 27 HOH HOH . 
F 4 HOH AAA 62 362 32 HOH HOH . 
F 4 HOH AAA 63 363 166 HOH HOH . 
F 4 HOH AAA 64 364 15 HOH HOH . 
F 4 HOH AAA 65 365 16 HOH HOH . 
F 4 HOH AAA 66 366 116 HOH HOH . 
F 4 HOH AAA 67 367 76 HOH HOH . 
F 4 HOH AAA 68 368 5 HOH HOH . 
F 4 HOH AAA 69 369 121 HOH HOH . 
F 4 HOH AAA 70 370 9 HOH HOH . 
F 4 HOH AAA 71 371 133 HOH HOH . 
F 4 HOH AAA 72 372 182 HOH HOH . 
F 4 HOH AAA 73 373 19 HOH HOH . 
F 4 HOH AAA 74 374 46 HOH HOH . 
F 4 HOH AAA 75 375 31 HOH HOH . 
F 4 HOH AAA 76 376 10 HOH HOH . 
F 4 HOH AAA 77 377 6 HOH HOH . 
F 4 HOH AAA 78 378 172 HOH HOH . 
F 4 HOH AAA 79 379 117 HOH HOH . 
F 4 HOH AAA 80 380 148 HOH HOH . 
F 4 HOH AAA 81 381 66 HOH HOH . 
F 4 HOH AAA 82 382 48 HOH HOH . 
F 4 HOH AAA 83 383 129 HOH HOH . 
F 4 HOH AAA 84 384 114 HOH HOH . 
F 4 HOH AAA 85 385 70 HOH HOH . 
F 4 HOH AAA 86 386 113 HOH HOH . 
F 4 HOH AAA 87 387 156 HOH HOH . 
F 4 HOH AAA 88 388 107 HOH HOH . 
F 4 HOH AAA 89 389 4 HOH HOH . 
F 4 HOH AAA 90 390 155 HOH HOH . 
F 4 HOH AAA 91 391 184 HOH HOH . 
F 4 HOH AAA 92 392 118 HOH HOH . 
F 4 HOH AAA 93 393 186 HOH HOH . 
F 4 HOH AAA 94 394 93 HOH HOH . 
F 4 HOH AAA 95 395 168 HOH HOH . 
F 4 HOH AAA 96 396 55 HOH HOH . 
F 4 HOH AAA 97 397 52 HOH HOH . 
F 4 HOH AAA 98 398 36 HOH HOH . 
F 4 HOH AAA 99 399 135 HOH HOH . 
F 4 HOH AAA 100 400 51 HOH HOH . 
F 4 HOH AAA 101 401 43 HOH HOH . 
F 4 HOH AAA 102 402 62 HOH HOH . 
F 4 HOH AAA 103 403 37 HOH HOH . 
F 4 HOH AAA 104 404 33 HOH HOH . 
F 4 HOH AAA 105 405 151 HOH HOH . 
F 4 HOH AAA 106 406 137 HOH HOH . 
F 4 HOH AAA 107 407 13 HOH HOH . 
F 4 HOH AAA 108 408 54 HOH HOH . 
F 4 HOH AAA 109 409 12 HOH HOH . 
F 4 HOH AAA 110 410 141 HOH HOH . 
F 4 HOH AAA 111 411 187 HOH HOH . 
F 4 HOH AAA 112 412 171 HOH HOH . 
F 4 HOH AAA 113 413 2 HOH HOH . 
F 4 HOH AAA 114 414 14 HOH HOH . 
F 4 HOH AAA 115 415 29 HOH HOH . 
F 4 HOH AAA 116 416 146 HOH HOH . 
F 4 HOH AAA 117 417 45 HOH HOH . 
F 4 HOH AAA 118 418 161 HOH HOH . 
F 4 HOH AAA 119 419 128 HOH HOH . 
F 4 HOH AAA 120 420 127 HOH HOH . 
F 4 HOH AAA 121 421 102 HOH HOH . 
F 4 HOH AAA 122 422 78 HOH HOH . 
F 4 HOH AAA 123 423 157 HOH HOH . 
F 4 HOH AAA 124 424 167 HOH HOH . 
F 4 HOH AAA 125 425 145 HOH HOH . 
F 4 HOH AAA 126 426 106 HOH HOH . 
F 4 HOH AAA 127 427 59 HOH HOH . 
F 4 HOH AAA 128 428 79 HOH HOH . 
F 4 HOH AAA 129 429 120 HOH HOH . 
F 4 HOH AAA 130 430 160 HOH HOH . 
F 4 HOH AAA 131 431 53 HOH HOH . 
F 4 HOH AAA 132 432 49 HOH HOH . 
F 4 HOH AAA 133 433 110 HOH HOH . 
F 4 HOH AAA 134 434 115 HOH HOH . 
F 4 HOH AAA 135 435 103 HOH HOH . 
F 4 HOH AAA 136 436 17 HOH HOH . 
F 4 HOH AAA 137 437 63 HOH HOH . 
F 4 HOH AAA 138 438 58 HOH HOH . 
F 4 HOH AAA 139 439 94 HOH HOH . 
F 4 HOH AAA 140 440 98 HOH HOH . 
F 4 HOH AAA 141 441 109 HOH HOH . 
F 4 HOH AAA 142 442 96 HOH HOH . 
F 4 HOH AAA 143 443 65 HOH HOH . 
F 4 HOH AAA 144 444 139 HOH HOH . 
F 4 HOH AAA 145 445 179 HOH HOH . 
F 4 HOH AAA 146 446 181 HOH HOH . 
F 4 HOH AAA 147 447 192 HOH HOH . 
F 4 HOH AAA 148 448 97 HOH HOH . 
F 4 HOH AAA 149 449 169 HOH HOH . 
F 4 HOH AAA 150 450 81 HOH HOH . 
F 4 HOH AAA 151 451 180 HOH HOH . 
F 4 HOH AAA 152 452 77 HOH HOH . 
F 4 HOH AAA 153 453 85 HOH HOH . 
F 4 HOH AAA 154 454 149 HOH HOH . 
F 4 HOH AAA 155 455 158 HOH HOH . 
F 4 HOH AAA 156 456 140 HOH HOH . 
F 4 HOH AAA 157 457 90 HOH HOH . 
F 4 HOH AAA 158 458 42 HOH HOH . 
F 4 HOH AAA 159 459 100 HOH HOH . 
F 4 HOH AAA 160 460 154 HOH HOH . 
F 4 HOH AAA 161 461 124 HOH HOH . 
F 4 HOH AAA 162 462 122 HOH HOH . 
F 4 HOH AAA 163 463 174 HOH HOH . 
F 4 HOH AAA 164 464 147 HOH HOH . 
F 4 HOH AAA 165 465 101 HOH HOH . 
F 4 HOH AAA 166 466 44 HOH HOH . 
F 4 HOH AAA 167 467 134 HOH HOH . 
F 4 HOH AAA 168 468 193 HOH HOH . 
F 4 HOH AAA 169 469 138 HOH HOH . 
F 4 HOH AAA 170 470 71 HOH HOH . 
F 4 HOH AAA 171 471 162 HOH HOH . 
F 4 HOH AAA 172 472 72 HOH HOH . 
F 4 HOH AAA 173 473 104 HOH HOH . 
F 4 HOH AAA 174 474 39 HOH HOH . 
F 4 HOH AAA 175 475 136 HOH HOH . 
F 4 HOH AAA 176 476 153 HOH HOH . 
F 4 HOH AAA 177 477 57 HOH HOH . 
F 4 HOH AAA 178 478 67 HOH HOH . 
F 4 HOH AAA 179 479 111 HOH HOH . 
F 4 HOH AAA 180 480 185 HOH HOH . 
F 4 HOH AAA 181 481 82 HOH HOH . 
F 4 HOH AAA 182 482 163 HOH HOH . 
F 4 HOH AAA 183 483 190 HOH HOH . 
F 4 HOH AAA 184 484 150 HOH HOH . 
F 4 HOH AAA 185 485 88 HOH HOH . 
F 4 HOH AAA 186 486 143 HOH HOH . 
F 4 HOH AAA 187 487 69 HOH HOH . 
F 4 HOH AAA 188 488 175 HOH HOH . 
F 4 HOH AAA 189 489 89 HOH HOH . 
F 4 HOH AAA 190 490 112 HOH HOH . 
F 4 HOH AAA 191 491 87 HOH HOH . 
F 4 HOH AAA 192 492 83 HOH HOH . 
F 4 HOH AAA 193 493 68 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 3 15.898 1.064 7.043 1 33.68 0 C1 EDO 204 AAA 1 
HETATM 2 O O1 EDO . . . E 3 16.835 1.966 7.605 1 33.69 0 O1 EDO 204 AAA 1 
HETATM 3 C C2 EDO . . . E 3 16.42 0.429 5.824 1 30.53 0 C2 EDO 204 AAA 1 
HETATM 4 O O2 EDO . . . E 3 17.466 -0.455 6.146 1 29.37 0 O2 EDO 204 AAA 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           394 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#