data_7QDT # _model_server_result.job_id c9mKGGbZwERvIO-qoKAcrg _model_server_result.datetime_utc '2024-11-23 01:07:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qdt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7QDT # _exptl.entry_id 7QDT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 650.973 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description "3,5,3'TRIIODOTHYRONINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7QDT _cell.length_a 143.328 _cell.length_b 143.328 _cell.length_c 88.502 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QDT _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H12 I3 N O4' _chem_comp.formula_weight 650.973 _chem_comp.id T3 _chem_comp.mon_nstd_flag . _chem_comp.name "3,5,3'TRIIODOTHYRONINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'T3;THYROID HORMONE;LIOTHYRONINE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C3 T3 doub 290 n y C1 C11 T3 sing 291 n y C1 C13 T3 sing 292 n n C2 C4 T3 doub 293 n y C2 C12 T3 sing 294 n y C2 O2 T3 sing 295 n n C3 C5 T3 sing 296 n y C3 HC3 T3 sing 297 n n C4 C6 T3 sing 298 n y C4 HC4 T3 sing 299 n n C5 C7 T3 doub 300 n y C5 I1 T3 sing 301 n n C6 C8 T3 doub 302 n y C6 I2 T3 sing 303 n n C7 C9 T3 sing 304 n y C7 O2 T3 sing 305 n n C8 C10 T3 sing 306 n y C8 O1 T3 sing 307 n n C9 C11 T3 doub 308 n y C9 I3 T3 sing 309 n n C10 C12 T3 doub 310 n y C10 HC10 T3 sing 311 n n C11 HC11 T3 sing 312 n n C12 HC12 T3 sing 313 n n C13 CA T3 sing 314 n n C13 H131 T3 sing 315 n n C13 H132 T3 sing 316 n n CA C T3 sing 317 n n CA N T3 sing 318 n n CA HA T3 sing 319 n n C OXT T3 sing 320 n n C O T3 doub 321 n n N H2 T3 sing 322 n n N H T3 sing 323 n n O1 HO1 T3 sing 324 n n OXT HXT T3 sing 325 n n # _atom_sites.entry_id 7QDT _atom_sites.fract_transf_matrix[1][1] 0.006977 _atom_sites.fract_transf_matrix[1][2] 0.004028 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008056 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011299 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T3 A 1 401 401 T3 T3 . C 3 HOH A 1 501 501 HOH HOH . C 3 HOH A 2 502 502 HOH HOH . C 3 HOH A 3 503 503 HOH HOH . C 3 HOH A 4 504 504 HOH HOH . C 3 HOH A 5 505 505 HOH HOH . C 3 HOH A 6 506 506 HOH HOH . C 3 HOH A 7 507 507 HOH HOH . C 3 HOH A 8 508 508 HOH HOH . C 3 HOH A 9 509 509 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 T3 . . . B 2 -56.467 10.025 14.225 1 51.45 ? C1 T3 401 A 1 HETATM 2 C C2 T3 . . . B 2 -59.455 5.879 13.477 1 47.02 ? C2 T3 401 A 1 HETATM 3 C C3 T3 . . . B 2 -57.549 9.711 15.021 1 58.64 ? C3 T3 401 A 1 HETATM 4 C C4 T3 . . . B 2 -60.187 4.825 14.017 1 51.65 ? C4 T3 401 A 1 HETATM 5 C C5 T3 . . . B 2 -58.157 8.46 15.035 1 54.63 ? C5 T3 401 A 1 HETATM 6 C C6 T3 . . . B 2 -61.421 4.418 13.479 1 54.22 ? C6 T3 401 A 1 HETATM 7 C C7 T3 . . . B 2 -57.662 7.436 14.142 1 50.78 ? C7 T3 401 A 1 HETATM 8 C C8 T3 . . . B 2 -61.95 5.134 12.327 1 45.98 ? C8 T3 401 A 1 HETATM 9 C C9 T3 . . . B 2 -56.537 7.795 13.314 1 56.93 ? C9 T3 401 A 1 HETATM 10 C C10 T3 . . . B 2 -61.213 6.181 11.821 1 48.65 ? C10 T3 401 A 1 HETATM 11 C C11 T3 . . . B 2 -56 9.083 13.386 1 56.8 ? C11 T3 401 A 1 HETATM 12 C C12 T3 . . . B 2 -59.985 6.554 12.376 1 47.29 ? C12 T3 401 A 1 HETATM 13 C C13 T3 . . . B 2 -55.869 11.406 14.263 1 51.34 ? C13 T3 401 A 1 HETATM 14 C CA T3 . . . B 2 -54.367 11.475 14.15 1 49.69 ? CA T3 401 A 1 HETATM 15 C C T3 . . . B 2 -53.961 12.907 14.388 1 51.73 ? C T3 401 A 1 HETATM 16 I I1 T3 . . . B 2 -59.814 7.98 16.242 1 60.65 ? I1 T3 401 A 1 HETATM 17 I I2 T3 . . . B 2 -62.541 2.81 14.243 1 61.22 ? I2 T3 401 A 1 HETATM 18 I I3 T3 . . . B 2 -55.697 6.354 12.006 1 77.2 ? I3 T3 401 A 1 HETATM 19 N N T3 . . . B 2 -53.83 10.593 15.155 1 46.45 ? N T3 401 A 1 HETATM 20 O O1 T3 . . . B 2 -63.126 4.721 11.831 1 49.08 ? O1 T3 401 A 1 HETATM 21 O O2 T3 . . . B 2 -58.236 6.193 14.081 1 48.47 ? O2 T3 401 A 1 HETATM 22 O OXT T3 . . . B 2 -52.805 13.176 14.784 1 50.89 ? OXT T3 401 A 1 HETATM 23 O O T3 . . . B 2 -54.811 13.798 14.2 1 55.15 ? O T3 401 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #