data_7QEI # _model_server_result.job_id Zltq4D0Hh2iHQY_Grq6hIg _model_server_result.datetime_utc '2024-11-21 12:52:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qei # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7QEI # _exptl.entry_id 7QEI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 433.375 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-[[4-[[2,4-bis(azanyl)-6-oxidanylidene-1H-pyrimidin-5-yl]carbamoylamino]phenyl]carbonylamino]pentanedioic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QEI _cell.length_a 77.11 _cell.length_b 109.264 _cell.length_c 73.025 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QEI _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 63 A ILE 111 1_555 A N CSO 64 A CSO 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale2 A C CSO 64 A CSO 112 1_555 A N SER 65 A SER 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C17 H19 N7 O7' _chem_comp.formula_weight 433.375 _chem_comp.id 9L9 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-[[4-[[2,4-bis(azanyl)-6-oxidanylidene-1H-pyrimidin-5-yl]carbamoylamino]phenyl]carbonylamino]pentanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2A C2 9L9 sing 1 n n N1 C2 9L9 doub 2 n n N1 C6 9L9 sing 3 n n C2 N3 9L9 sing 4 n n N3 C4 9L9 sing 5 n n C4 O4A 9L9 doub 6 n n C4 C5 9L9 sing 7 n n N5A C5 9L9 sing 8 n n N5A CAW 9L9 sing 9 n n C5 C6 9L9 doub 10 n n C6 N7 9L9 sing 11 n n O8A CAW 9L9 doub 12 n n N9 C1B 9L9 sing 13 n n N9 CAW 9L9 sing 14 n n C1B C2B 9L9 sing 15 n y C1B C6B 9L9 doub 16 n y C2B C3B 9L9 doub 17 n y C3B C4B 9L9 sing 18 n y C4B C5B 9L9 doub 19 n y C4B C7B 9L9 sing 20 n n C5B C6B 9L9 sing 21 n y C7B O7B 9L9 doub 22 n n C7B N 9L9 sing 23 n n N CA 9L9 sing 24 n n CB CG 9L9 sing 25 n n CB CA 9L9 sing 26 n n CG CD 9L9 sing 27 n n CD OE1 9L9 doub 28 n n CD OE2 9L9 sing 29 n n C O 9L9 sing 30 n n C OXT 9L9 doub 31 n n C CA 9L9 sing 32 n n N2A H2A1 9L9 sing 33 n n N2A H2A2 9L9 sing 34 n n N7 H71N 9L9 sing 35 n n N7 H72N 9L9 sing 36 n n N9 H9 9L9 sing 37 n n C2B H2B 9L9 sing 38 n n C6B H6B 9L9 sing 39 n n C3B H3B 9L9 sing 40 n n C5B H5B 9L9 sing 41 n n N H 9L9 sing 42 n n CA HA 9L9 sing 43 n n CB HB1C 9L9 sing 44 n n CB HB2C 9L9 sing 45 n n CG HG1C 9L9 sing 46 n n CG HG2C 9L9 sing 47 n n OE2 HE2 9L9 sing 48 n n O HB 9L9 sing 49 n n N5A H5A 9L9 sing 50 n n N3 HN3 9L9 sing 51 n n # _atom_sites.entry_id 7QEI _atom_sites.fract_transf_matrix[1][1] 0.012968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013694 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9L9 A 1 401 1 9L9 LIG . C 3 ATR A 1 402 1 ATR LI2 . D 4 HOH A 1 501 49 HOH HOH . D 4 HOH A 2 502 172 HOH HOH . D 4 HOH A 3 503 107 HOH HOH . D 4 HOH A 4 504 83 HOH HOH . D 4 HOH A 5 505 50 HOH HOH . D 4 HOH A 6 506 46 HOH HOH . D 4 HOH A 7 507 97 HOH HOH . D 4 HOH A 8 508 32 HOH HOH . D 4 HOH A 9 509 113 HOH HOH . D 4 HOH A 10 510 106 HOH HOH . D 4 HOH A 11 511 138 HOH HOH . D 4 HOH A 12 512 167 HOH HOH . D 4 HOH A 13 513 63 HOH HOH . D 4 HOH A 14 514 60 HOH HOH . D 4 HOH A 15 515 1 HOH HOH . D 4 HOH A 16 516 12 HOH HOH . D 4 HOH A 17 517 112 HOH HOH . D 4 HOH A 18 518 93 HOH HOH . D 4 HOH A 19 519 105 HOH HOH . D 4 HOH A 20 520 14 HOH HOH . D 4 HOH A 21 521 18 HOH HOH . D 4 HOH A 22 522 81 HOH HOH . D 4 HOH A 23 523 82 HOH HOH . D 4 HOH A 24 524 27 HOH HOH . D 4 HOH A 25 525 149 HOH HOH . D 4 HOH A 26 526 84 HOH HOH . D 4 HOH A 27 527 74 HOH HOH . D 4 HOH A 28 528 30 HOH HOH . D 4 HOH A 29 529 157 HOH HOH . D 4 HOH A 30 530 65 HOH HOH . D 4 HOH A 31 531 104 HOH HOH . D 4 HOH A 32 532 23 HOH HOH . D 4 HOH A 33 533 43 HOH HOH . D 4 HOH A 34 534 62 HOH HOH . D 4 HOH A 35 535 37 HOH HOH . D 4 HOH A 36 536 80 HOH HOH . D 4 HOH A 37 537 2 HOH HOH . D 4 HOH A 38 538 4 HOH HOH . D 4 HOH A 39 539 77 HOH HOH . D 4 HOH A 40 540 26 HOH HOH . D 4 HOH A 41 541 108 HOH HOH . D 4 HOH A 42 542 94 HOH HOH . D 4 HOH A 43 543 110 HOH HOH . D 4 HOH A 44 544 7 HOH HOH . D 4 HOH A 45 545 72 HOH HOH . D 4 HOH A 46 546 78 HOH HOH . D 4 HOH A 47 547 159 HOH HOH . D 4 HOH A 48 548 61 HOH HOH . D 4 HOH A 49 549 67 HOH HOH . D 4 HOH A 50 550 131 HOH HOH . D 4 HOH A 51 551 66 HOH HOH . D 4 HOH A 52 552 70 HOH HOH . D 4 HOH A 53 553 76 HOH HOH . D 4 HOH A 54 554 42 HOH HOH . D 4 HOH A 55 555 59 HOH HOH . D 4 HOH A 56 556 163 HOH HOH . D 4 HOH A 57 557 88 HOH HOH . D 4 HOH A 58 558 147 HOH HOH . D 4 HOH A 59 559 164 HOH HOH . D 4 HOH A 60 560 44 HOH HOH . D 4 HOH A 61 561 11 HOH HOH . D 4 HOH A 62 562 68 HOH HOH . D 4 HOH A 63 563 90 HOH HOH . D 4 HOH A 64 564 91 HOH HOH . D 4 HOH A 65 565 33 HOH HOH . D 4 HOH A 66 566 5 HOH HOH . D 4 HOH A 67 567 79 HOH HOH . D 4 HOH A 68 568 92 HOH HOH . D 4 HOH A 69 569 38 HOH HOH . D 4 HOH A 70 570 69 HOH HOH . D 4 HOH A 71 571 13 HOH HOH . D 4 HOH A 72 572 122 HOH HOH . D 4 HOH A 73 573 15 HOH HOH . D 4 HOH A 74 574 168 HOH HOH . D 4 HOH A 75 575 48 HOH HOH . D 4 HOH A 76 576 115 HOH HOH . D 4 HOH A 77 577 155 HOH HOH . D 4 HOH A 78 578 35 HOH HOH . D 4 HOH A 79 579 111 HOH HOH . D 4 HOH A 80 580 6 HOH HOH . D 4 HOH A 81 581 28 HOH HOH . D 4 HOH A 82 582 25 HOH HOH . D 4 HOH A 83 583 102 HOH HOH . D 4 HOH A 84 584 36 HOH HOH . D 4 HOH A 85 585 10 HOH HOH . D 4 HOH A 86 586 17 HOH HOH . D 4 HOH A 87 587 114 HOH HOH . D 4 HOH A 88 588 54 HOH HOH . D 4 HOH A 89 589 52 HOH HOH . D 4 HOH A 90 590 162 HOH HOH . D 4 HOH A 91 591 85 HOH HOH . D 4 HOH A 92 592 116 HOH HOH . D 4 HOH A 93 593 56 HOH HOH . D 4 HOH A 94 594 103 HOH HOH . D 4 HOH A 95 595 51 HOH HOH . D 4 HOH A 96 596 141 HOH HOH . D 4 HOH A 97 597 73 HOH HOH . D 4 HOH A 98 598 169 HOH HOH . D 4 HOH A 99 599 109 HOH HOH . D 4 HOH A 100 600 95 HOH HOH . D 4 HOH A 101 601 99 HOH HOH . D 4 HOH A 102 602 100 HOH HOH . D 4 HOH A 103 603 40 HOH HOH . D 4 HOH A 104 604 151 HOH HOH . D 4 HOH A 105 605 29 HOH HOH . D 4 HOH A 106 606 124 HOH HOH . D 4 HOH A 107 607 8 HOH HOH . D 4 HOH A 108 608 75 HOH HOH . D 4 HOH A 109 609 58 HOH HOH . D 4 HOH A 110 610 158 HOH HOH . D 4 HOH A 111 611 9 HOH HOH . D 4 HOH A 112 612 130 HOH HOH . D 4 HOH A 113 613 150 HOH HOH . D 4 HOH A 114 614 31 HOH HOH . D 4 HOH A 115 615 171 HOH HOH . D 4 HOH A 116 616 152 HOH HOH . D 4 HOH A 117 617 22 HOH HOH . D 4 HOH A 118 618 148 HOH HOH . D 4 HOH A 119 619 34 HOH HOH . D 4 HOH A 120 620 146 HOH HOH . D 4 HOH A 121 621 55 HOH HOH . D 4 HOH A 122 622 53 HOH HOH . D 4 HOH A 123 623 19 HOH HOH . D 4 HOH A 124 624 64 HOH HOH . D 4 HOH A 125 625 87 HOH HOH . D 4 HOH A 126 626 120 HOH HOH . D 4 HOH A 127 627 16 HOH HOH . D 4 HOH A 128 628 132 HOH HOH . D 4 HOH A 129 629 98 HOH HOH . D 4 HOH A 130 630 121 HOH HOH . D 4 HOH A 131 631 86 HOH HOH . D 4 HOH A 132 632 127 HOH HOH . D 4 HOH A 133 633 89 HOH HOH . D 4 HOH A 134 634 45 HOH HOH . D 4 HOH A 135 635 96 HOH HOH . D 4 HOH A 136 636 136 HOH HOH . D 4 HOH A 137 637 153 HOH HOH . D 4 HOH A 138 638 160 HOH HOH . D 4 HOH A 139 639 156 HOH HOH . D 4 HOH A 140 640 144 HOH HOH . D 4 HOH A 141 641 47 HOH HOH . D 4 HOH A 142 642 154 HOH HOH . D 4 HOH A 143 643 161 HOH HOH . D 4 HOH A 144 644 123 HOH HOH . D 4 HOH A 145 645 143 HOH HOH . D 4 HOH A 146 646 125 HOH HOH . D 4 HOH A 147 647 165 HOH HOH . D 4 HOH A 148 648 139 HOH HOH . D 4 HOH A 149 649 126 HOH HOH . D 4 HOH A 150 650 128 HOH HOH . D 4 HOH A 151 651 145 HOH HOH . D 4 HOH A 152 652 41 HOH HOH . D 4 HOH A 153 653 118 HOH HOH . D 4 HOH A 154 654 170 HOH HOH . D 4 HOH A 155 655 134 HOH HOH . D 4 HOH A 156 656 137 HOH HOH . D 4 HOH A 157 657 119 HOH HOH . D 4 HOH A 158 658 24 HOH HOH . D 4 HOH A 159 659 39 HOH HOH . D 4 HOH A 160 660 133 HOH HOH . D 4 HOH A 161 661 140 HOH HOH . D 4 HOH A 162 662 142 HOH HOH . D 4 HOH A 163 663 135 HOH HOH . D 4 HOH A 164 664 166 HOH HOH . D 4 HOH A 165 665 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2A 9L9 . . . B 2 17.876 35.952 165.367 1 17.59 ? N2A 9L9 401 A 1 HETATM 2 N N1 9L9 . . . B 2 18.86 33.825 166.041 1 17.08 ? N1 9L9 401 A 1 HETATM 3 C C2 9L9 . . . B 2 18.239 34.59 165.078 1 17.09 ? C2 9L9 401 A 1 HETATM 4 N N3 9L9 . . . B 2 17.927 34.026 163.819 1 16.86 ? N3 9L9 401 A 1 HETATM 5 C C4 9L9 . . . B 2 18.365 32.632 163.61 1 16.85 ? C4 9L9 401 A 1 HETATM 6 O O4A 9L9 . . . B 2 18.125 32.151 162.488 1 16.54 ? O4A 9L9 401 A 1 HETATM 7 N N5A 9L9 . . . B 2 19.386 30.652 164.26 1 18.11 ? N5A 9L9 401 A 1 HETATM 8 C C5 9L9 . . . B 2 18.991 31.885 164.597 1 17 ? C5 9L9 401 A 1 HETATM 9 C C6 9L9 . . . B 2 19.244 32.493 165.811 1 16.21 ? C6 9L9 401 A 1 HETATM 10 N N7 9L9 . . . B 2 19.884 31.773 166.782 1 15.68 ? N7 9L9 401 A 1 HETATM 11 O O8A 9L9 . . . B 2 21.464 31.297 163.498 1 18.32 ? O8A 9L9 401 A 1 HETATM 12 N N9 9L9 . . . B 2 21.043 29.057 163.417 1 19.16 ? N9 9L9 401 A 1 HETATM 13 C C1B 9L9 . . . B 2 22.205 28.611 162.812 1 19.7 ? C1B 9L9 401 A 1 HETATM 14 C C2B 9L9 . . . B 2 22.825 29.367 161.8 1 20.02 ? C2B 9L9 401 A 1 HETATM 15 C C3B 9L9 . . . B 2 23.953 28.877 161.141 1 20.34 ? C3B 9L9 401 A 1 HETATM 16 C C4B 9L9 . . . B 2 24.469 27.624 161.455 1 21.26 ? C4B 9L9 401 A 1 HETATM 17 C C5B 9L9 . . . B 2 23.796 26.853 162.428 1 20.83 ? C5B 9L9 401 A 1 HETATM 18 C C6B 9L9 . . . B 2 22.666 27.323 163.088 1 20.01 ? C6B 9L9 401 A 1 HETATM 19 C C7B 9L9 . . . B 2 25.679 27.02 160.748 1 22.8 ? C7B 9L9 401 A 1 HETATM 20 O O7B 9L9 . . . B 2 26.398 27.811 160.079 1 23.84 ? O7B 9L9 401 A 1 HETATM 21 C CAW 9L9 . . . B 2 20.666 30.35 163.709 1 18.61 ? CAW 9L9 401 A 1 HETATM 22 N N 9L9 . . . B 2 25.932 25.662 160.786 1 24.23 ? N 9L9 401 A 1 HETATM 23 C CA 9L9 . . . B 2 27.037 25 160.074 1 23.97 ? CA 9L9 401 A 1 HETATM 24 C C 9L9 . . . B 2 26.509 23.578 159.923 1 22.08 ? C 9L9 401 A 1 HETATM 25 O OXT 9L9 . . . B 2 27.092 22.857 159.039 1 22.46 -1 OXT 9L9 401 A 1 HETATM 26 C CB 9L9 . . . B 2 28.354 25.134 160.857 1 25.14 ? CB 9L9 401 A 1 HETATM 27 C CG 9L9 . . . B 2 28.211 24.738 162.311 1 26.14 ? CG 9L9 401 A 1 HETATM 28 C CD 9L9 . . . B 2 29.417 25.04 163.162 1 26.9 ? CD 9L9 401 A 1 HETATM 29 O OE1 9L9 . . . B 2 30.569 25.43 162.704 1 28.2 -1 OE1 9L9 401 A 1 HETATM 30 O OE2 9L9 . . . B 2 29.369 24.922 164.444 1 30.41 ? OE2 9L9 401 A 1 HETATM 31 O O 9L9 . . . B 2 25.5 23.082 160.574 1 21.31 ? O 9L9 401 A 1 # _model_server_stats.io_time_ms 116 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #