data_7QEI # _model_server_result.job_id PTFQQ7ctfeFCnnuWC5_mqQ _model_server_result.datetime_utc '2024-11-07 04:45:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qei # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7QEI # _exptl.entry_id 7QEI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QEI _cell.length_a 77.11 _cell.length_b 109.264 _cell.length_c 73.025 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QEI _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 63 A ILE 111 1_555 A N CSO 64 A CSO 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale2 A C CSO 64 A CSO 112 1_555 A N SER 65 A SER 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATR _chem_comp.mon_nstd_flag . _chem_comp.name "2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ATR doub 121 n n PB O2B ATR sing 122 n n PB O3B ATR sing 123 n n PB O3A ATR sing 124 n n O2B HOB2 ATR sing 125 n n O3B HOB3 ATR sing 126 n n PA O1A ATR doub 127 n n PA O2A ATR sing 128 n n PA O3A ATR sing 129 n n PA O5' ATR sing 130 n n O2A HOA2 ATR sing 131 n n O5' C5' ATR sing 132 n n C5' C4' ATR sing 133 n n C5' "H5'1" ATR sing 134 n n C5' "H5'2" ATR sing 135 n n C4' O4' ATR sing 136 n n C4' C3' ATR sing 137 n n C4' H4' ATR sing 138 n n O4' C1' ATR sing 139 n n C3' O3' ATR sing 140 n n C3' C2' ATR sing 141 n n C3' H3' ATR sing 142 n n O3' HO3' ATR sing 143 n n C2' O2' ATR sing 144 n n C2' C1' ATR sing 145 n n C2' H2' ATR sing 146 n n O2' P2' ATR sing 147 n n P2' O1P ATR doub 148 n n P2' O2P ATR sing 149 n n P2' O3P ATR sing 150 n n O2P HOP2 ATR sing 151 n n O3P HOP3 ATR sing 152 n n C1' N9 ATR sing 153 n n C1' H1' ATR sing 154 n n N9 C8 ATR sing 155 n y N9 C4 ATR sing 156 n y C8 N7 ATR doub 157 n y C8 H8 ATR sing 158 n n N7 C5 ATR sing 159 n y C5 C6 ATR sing 160 n y C5 C4 ATR doub 161 n y C6 N6 ATR sing 162 n n C6 N1 ATR doub 163 n y N6 HN61 ATR sing 164 n n N6 HN62 ATR sing 165 n n N1 C2 ATR sing 166 n y C2 N3 ATR doub 167 n y C2 H2 ATR sing 168 n n N3 C4 ATR sing 169 n y # _atom_sites.entry_id 7QEI _atom_sites.fract_transf_matrix[1][1] 0.012968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013694 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9L9 A 1 401 1 9L9 LIG . C 3 ATR A 1 402 1 ATR LI2 . D 4 HOH A 1 501 49 HOH HOH . D 4 HOH A 2 502 172 HOH HOH . D 4 HOH A 3 503 107 HOH HOH . D 4 HOH A 4 504 83 HOH HOH . D 4 HOH A 5 505 50 HOH HOH . D 4 HOH A 6 506 46 HOH HOH . D 4 HOH A 7 507 97 HOH HOH . D 4 HOH A 8 508 32 HOH HOH . D 4 HOH A 9 509 113 HOH HOH . D 4 HOH A 10 510 106 HOH HOH . D 4 HOH A 11 511 138 HOH HOH . D 4 HOH A 12 512 167 HOH HOH . D 4 HOH A 13 513 63 HOH HOH . D 4 HOH A 14 514 60 HOH HOH . D 4 HOH A 15 515 1 HOH HOH . D 4 HOH A 16 516 12 HOH HOH . D 4 HOH A 17 517 112 HOH HOH . D 4 HOH A 18 518 93 HOH HOH . D 4 HOH A 19 519 105 HOH HOH . D 4 HOH A 20 520 14 HOH HOH . D 4 HOH A 21 521 18 HOH HOH . D 4 HOH A 22 522 81 HOH HOH . D 4 HOH A 23 523 82 HOH HOH . D 4 HOH A 24 524 27 HOH HOH . D 4 HOH A 25 525 149 HOH HOH . D 4 HOH A 26 526 84 HOH HOH . D 4 HOH A 27 527 74 HOH HOH . D 4 HOH A 28 528 30 HOH HOH . D 4 HOH A 29 529 157 HOH HOH . D 4 HOH A 30 530 65 HOH HOH . D 4 HOH A 31 531 104 HOH HOH . D 4 HOH A 32 532 23 HOH HOH . D 4 HOH A 33 533 43 HOH HOH . D 4 HOH A 34 534 62 HOH HOH . D 4 HOH A 35 535 37 HOH HOH . D 4 HOH A 36 536 80 HOH HOH . D 4 HOH A 37 537 2 HOH HOH . D 4 HOH A 38 538 4 HOH HOH . D 4 HOH A 39 539 77 HOH HOH . D 4 HOH A 40 540 26 HOH HOH . D 4 HOH A 41 541 108 HOH HOH . D 4 HOH A 42 542 94 HOH HOH . D 4 HOH A 43 543 110 HOH HOH . D 4 HOH A 44 544 7 HOH HOH . D 4 HOH A 45 545 72 HOH HOH . D 4 HOH A 46 546 78 HOH HOH . D 4 HOH A 47 547 159 HOH HOH . D 4 HOH A 48 548 61 HOH HOH . D 4 HOH A 49 549 67 HOH HOH . D 4 HOH A 50 550 131 HOH HOH . D 4 HOH A 51 551 66 HOH HOH . D 4 HOH A 52 552 70 HOH HOH . D 4 HOH A 53 553 76 HOH HOH . D 4 HOH A 54 554 42 HOH HOH . D 4 HOH A 55 555 59 HOH HOH . D 4 HOH A 56 556 163 HOH HOH . D 4 HOH A 57 557 88 HOH HOH . D 4 HOH A 58 558 147 HOH HOH . D 4 HOH A 59 559 164 HOH HOH . D 4 HOH A 60 560 44 HOH HOH . D 4 HOH A 61 561 11 HOH HOH . D 4 HOH A 62 562 68 HOH HOH . D 4 HOH A 63 563 90 HOH HOH . D 4 HOH A 64 564 91 HOH HOH . D 4 HOH A 65 565 33 HOH HOH . D 4 HOH A 66 566 5 HOH HOH . D 4 HOH A 67 567 79 HOH HOH . D 4 HOH A 68 568 92 HOH HOH . D 4 HOH A 69 569 38 HOH HOH . D 4 HOH A 70 570 69 HOH HOH . D 4 HOH A 71 571 13 HOH HOH . D 4 HOH A 72 572 122 HOH HOH . D 4 HOH A 73 573 15 HOH HOH . D 4 HOH A 74 574 168 HOH HOH . D 4 HOH A 75 575 48 HOH HOH . D 4 HOH A 76 576 115 HOH HOH . D 4 HOH A 77 577 155 HOH HOH . D 4 HOH A 78 578 35 HOH HOH . D 4 HOH A 79 579 111 HOH HOH . D 4 HOH A 80 580 6 HOH HOH . D 4 HOH A 81 581 28 HOH HOH . D 4 HOH A 82 582 25 HOH HOH . D 4 HOH A 83 583 102 HOH HOH . D 4 HOH A 84 584 36 HOH HOH . D 4 HOH A 85 585 10 HOH HOH . D 4 HOH A 86 586 17 HOH HOH . D 4 HOH A 87 587 114 HOH HOH . D 4 HOH A 88 588 54 HOH HOH . D 4 HOH A 89 589 52 HOH HOH . D 4 HOH A 90 590 162 HOH HOH . D 4 HOH A 91 591 85 HOH HOH . D 4 HOH A 92 592 116 HOH HOH . D 4 HOH A 93 593 56 HOH HOH . D 4 HOH A 94 594 103 HOH HOH . D 4 HOH A 95 595 51 HOH HOH . D 4 HOH A 96 596 141 HOH HOH . D 4 HOH A 97 597 73 HOH HOH . D 4 HOH A 98 598 169 HOH HOH . D 4 HOH A 99 599 109 HOH HOH . D 4 HOH A 100 600 95 HOH HOH . D 4 HOH A 101 601 99 HOH HOH . D 4 HOH A 102 602 100 HOH HOH . D 4 HOH A 103 603 40 HOH HOH . D 4 HOH A 104 604 151 HOH HOH . D 4 HOH A 105 605 29 HOH HOH . D 4 HOH A 106 606 124 HOH HOH . D 4 HOH A 107 607 8 HOH HOH . D 4 HOH A 108 608 75 HOH HOH . D 4 HOH A 109 609 58 HOH HOH . D 4 HOH A 110 610 158 HOH HOH . D 4 HOH A 111 611 9 HOH HOH . D 4 HOH A 112 612 130 HOH HOH . D 4 HOH A 113 613 150 HOH HOH . D 4 HOH A 114 614 31 HOH HOH . D 4 HOH A 115 615 171 HOH HOH . D 4 HOH A 116 616 152 HOH HOH . D 4 HOH A 117 617 22 HOH HOH . D 4 HOH A 118 618 148 HOH HOH . D 4 HOH A 119 619 34 HOH HOH . D 4 HOH A 120 620 146 HOH HOH . D 4 HOH A 121 621 55 HOH HOH . D 4 HOH A 122 622 53 HOH HOH . D 4 HOH A 123 623 19 HOH HOH . D 4 HOH A 124 624 64 HOH HOH . D 4 HOH A 125 625 87 HOH HOH . D 4 HOH A 126 626 120 HOH HOH . D 4 HOH A 127 627 16 HOH HOH . D 4 HOH A 128 628 132 HOH HOH . D 4 HOH A 129 629 98 HOH HOH . D 4 HOH A 130 630 121 HOH HOH . D 4 HOH A 131 631 86 HOH HOH . D 4 HOH A 132 632 127 HOH HOH . D 4 HOH A 133 633 89 HOH HOH . D 4 HOH A 134 634 45 HOH HOH . D 4 HOH A 135 635 96 HOH HOH . D 4 HOH A 136 636 136 HOH HOH . D 4 HOH A 137 637 153 HOH HOH . D 4 HOH A 138 638 160 HOH HOH . D 4 HOH A 139 639 156 HOH HOH . D 4 HOH A 140 640 144 HOH HOH . D 4 HOH A 141 641 47 HOH HOH . D 4 HOH A 142 642 154 HOH HOH . D 4 HOH A 143 643 161 HOH HOH . D 4 HOH A 144 644 123 HOH HOH . D 4 HOH A 145 645 143 HOH HOH . D 4 HOH A 146 646 125 HOH HOH . D 4 HOH A 147 647 165 HOH HOH . D 4 HOH A 148 648 139 HOH HOH . D 4 HOH A 149 649 126 HOH HOH . D 4 HOH A 150 650 128 HOH HOH . D 4 HOH A 151 651 145 HOH HOH . D 4 HOH A 152 652 41 HOH HOH . D 4 HOH A 153 653 118 HOH HOH . D 4 HOH A 154 654 170 HOH HOH . D 4 HOH A 155 655 134 HOH HOH . D 4 HOH A 156 656 137 HOH HOH . D 4 HOH A 157 657 119 HOH HOH . D 4 HOH A 158 658 24 HOH HOH . D 4 HOH A 159 659 39 HOH HOH . D 4 HOH A 160 660 133 HOH HOH . D 4 HOH A 161 661 140 HOH HOH . D 4 HOH A 162 662 142 HOH HOH . D 4 HOH A 163 663 135 HOH HOH . D 4 HOH A 164 664 166 HOH HOH . D 4 HOH A 165 665 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ATR . . . C 3 12.3 26.939 173.525 1 60.61 ? PB ATR 402 A 1 HETATM 2 O O1B ATR . . . C 3 11.008 26.932 172.805 1 56.23 -1 O1B ATR 402 A 1 HETATM 3 O O2B ATR . . . C 3 12.041 26.921 174.94 1 59.77 -1 O2B ATR 402 A 1 HETATM 4 O O3B ATR . . . C 3 13.19 28.122 173.202 1 56.42 ? O3B ATR 402 A 1 HETATM 5 P PA ATR . . . C 3 14.101 25.115 171.893 1 46.04 ? PA ATR 402 A 1 HETATM 6 O O1A ATR . . . C 3 14.359 26.232 170.951 1 44.28 -1 O1A ATR 402 A 1 HETATM 7 O O2A ATR . . . C 3 15.341 24.682 172.611 1 42.41 ? O2A ATR 402 A 1 HETATM 8 O O3A ATR . . . C 3 13.09 25.459 173.111 1 53.04 ? O3A ATR 402 A 1 HETATM 9 O O5' ATR . . . C 3 13.441 23.909 171.031 1 40.77 ? O5' ATR 402 A 1 HETATM 10 C C5' ATR . . . C 3 13.451 22.568 171.504 1 35.75 ? C5' ATR 402 A 1 HETATM 11 C C4' ATR . . . C 3 12.174 21.932 171.052 1 34.72 ? C4' ATR 402 A 1 HETATM 12 O O4' ATR . . . C 3 12.299 20.595 170.961 1 33.6 ? O4' ATR 402 A 1 HETATM 13 C C3' ATR . . . C 3 10.965 22.279 172.142 1 34.43 ? C3' ATR 402 A 1 HETATM 14 O O3' ATR . . . C 3 9.793 22.667 171.406 1 30.02 ? O3' ATR 402 A 1 HETATM 15 C C2' ATR . . . C 3 10.888 21.2 172.852 1 35.3 ? C2' ATR 402 A 1 HETATM 16 O O2' ATR . . . C 3 9.542 20.92 173.545 1 33.54 ? O2' ATR 402 A 1 HETATM 17 P P2' ATR . . . C 3 9.011 22.024 174.73 1 33.77 ? P2' ATR 402 A 1 HETATM 18 O O1P ATR . . . C 3 8.28 23.209 174.094 1 30.79 -1 O1P ATR 402 A 1 HETATM 19 O O2P ATR . . . C 3 8.145 21.188 175.541 1 33.36 -1 O2P ATR 402 A 1 HETATM 20 O O3P ATR . . . C 3 10.191 22.52 175.494 1 31.84 ? O3P ATR 402 A 1 HETATM 21 C C1' ATR . . . C 3 11.25 19.969 171.844 1 34.93 ? C1' ATR 402 A 1 HETATM 22 N N9 ATR . . . C 3 11.568 18.854 172.551 1 36.31 ? N9 ATR 402 A 1 HETATM 23 C C8 ATR . . . C 3 12.251 18.749 173.673 1 35.21 ? C8 ATR 402 A 1 HETATM 24 N N7 ATR . . . C 3 12.271 17.503 174.087 1 35.04 ? N7 ATR 402 A 1 HETATM 25 C C5 ATR . . . C 3 11.57 16.75 173.202 1 35.24 ? C5 ATR 402 A 1 HETATM 26 C C6 ATR . . . C 3 11.239 15.392 173.084 1 32.55 ? C6 ATR 402 A 1 HETATM 27 N N6 ATR . . . C 3 11.728 14.451 174.106 1 33.34 ? N6 ATR 402 A 1 HETATM 28 N N1 ATR . . . C 3 10.506 14.942 172.074 1 33.5 ? N1 ATR 402 A 1 HETATM 29 C C2 ATR . . . C 3 10.09 15.786 171.167 1 36.36 ? C2 ATR 402 A 1 HETATM 30 N N3 ATR . . . C 3 10.372 17.075 171.228 1 35.24 ? N3 ATR 402 A 1 HETATM 31 C C4 ATR . . . C 3 11.119 17.593 172.245 1 36.49 ? C4 ATR 402 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 31 #