data_7QF2 # _model_server_result.job_id EOMZcycODfDPNYZQ3T2sJQ _model_server_result.datetime_utc '2024-11-13 21:01:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qf2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7QF2 # _exptl.entry_id 7QF2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 376.364 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RIBOFLAVIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QF2 _cell.length_a 39.9 _cell.length_b 39.9 _cell.length_c 134.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QF2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N MET 1 AAA MET 1 1_555 F CO CO . AAA CO 205 3_544 ? A ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc2 A N MET 1 AAA MET 1 1_555 F CO CO . AAA CO 205 3_544 ? B ? ? ? ? ? ? ? ? ? ? 1.754 ? metalc ? metalc3 A O MET 1 AAA MET 1 1_555 F CO CO . AAA CO 205 3_544 ? A ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc4 A O MET 1 AAA MET 1 1_555 F CO CO . AAA CO 205 3_544 ? B ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc5 A OE2 GLU 95 AAA GLU 95 1_555 F CO CO . AAA CO 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.862 ? metalc ? metalc6 F CO CO . AAA CO 205 1_555 G O HOH . AAA HOH 319 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc7 F CO CO . AAA CO 205 1_555 G O HOH . AAA HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? metalc ? metalc8 F CO CO . AAA CO 205 1_555 G O HOH . AAA HOH 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? # _chem_comp.formula 'C17 H20 N4 O6' _chem_comp.formula_weight 376.364 _chem_comp.id RBF _chem_comp.mon_nstd_flag . _chem_comp.name RIBOFLAVIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVINE;VITAMIN B2' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 RBF sing 277 n n N1 C10 RBF doub 278 n n C2 O2 RBF doub 279 n n C2 N3 RBF sing 280 n n N3 C4 RBF sing 281 n n N3 HN3 RBF sing 282 n n C4 O4 RBF doub 283 n n C4 C4A RBF sing 284 n n C4A N5 RBF doub 285 n n C4A C10 RBF sing 286 n n N5 C5A RBF sing 287 n n C5A C6 RBF doub 288 n y C5A C9A RBF sing 289 n y C6 C7 RBF sing 290 n y C6 HC6 RBF sing 291 n n C7 C7M RBF sing 292 n n C7 C8 RBF doub 293 n y C7M HC71 RBF sing 294 n n C7M HC72 RBF sing 295 n n C7M HC73 RBF sing 296 n n C8 C8M RBF sing 297 n n C8 C9 RBF sing 298 n y C8M HC81 RBF sing 299 n n C8M HC82 RBF sing 300 n n C8M HC83 RBF sing 301 n n C9 C9A RBF doub 302 n y C9 HC9 RBF sing 303 n n C9A N10 RBF sing 304 n n N10 C10 RBF sing 305 n n N10 C1' RBF sing 306 n n C1' C2' RBF sing 307 n n C1' HC11 RBF sing 308 n n C1' HC12 RBF sing 309 n n C2' O2' RBF sing 310 n n C2' C3' RBF sing 311 n n C2' HC2' RBF sing 312 n n O2' HO2' RBF sing 313 n n C3' O3' RBF sing 314 n n C3' C4' RBF sing 315 n n C3' HC3' RBF sing 316 n n O3' HO3' RBF sing 317 n n C4' O4' RBF sing 318 n n C4' C5' RBF sing 319 n n C4' HC4' RBF sing 320 n n O4' HO4' RBF sing 321 n n C5' O5' RBF sing 322 n n C5' HC51 RBF sing 323 n n C5' HC52 RBF sing 324 n n O5' HO5' RBF sing 325 n n # _atom_sites.entry_id 7QF2 _atom_sites.fract_transf_matrix[1][1] 0.025063 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025063 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007457 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RBF AAA 1 201 201 RBF RBF . C 3 GOL AAA 1 202 202 GOL GOL . D 4 CL AAA 1 203 1 CL CL . E 4 CL AAA 1 204 2 CL CL . F 5 CO AAA 1 205 1 CO CO . G 6 HOH AAA 1 301 79 HOH HOH . G 6 HOH AAA 2 302 185 HOH HOH . G 6 HOH AAA 3 303 75 HOH HOH . G 6 HOH AAA 4 304 27 HOH HOH . G 6 HOH AAA 5 305 187 HOH HOH . G 6 HOH AAA 6 306 100 HOH HOH . G 6 HOH AAA 7 307 197 HOH HOH . G 6 HOH AAA 8 308 82 HOH HOH . G 6 HOH AAA 9 309 77 HOH HOH . G 6 HOH AAA 10 310 69 HOH HOH . G 6 HOH AAA 11 311 37 HOH HOH . G 6 HOH AAA 12 312 113 HOH HOH . G 6 HOH AAA 13 313 191 HOH HOH . G 6 HOH AAA 14 314 50 HOH HOH . G 6 HOH AAA 15 315 146 HOH HOH . G 6 HOH AAA 16 316 42 HOH HOH . G 6 HOH AAA 17 317 65 HOH HOH . G 6 HOH AAA 18 318 63 HOH HOH . G 6 HOH AAA 19 319 136 HOH HOH . G 6 HOH AAA 20 320 10 HOH HOH . G 6 HOH AAA 21 321 130 HOH HOH . G 6 HOH AAA 22 322 53 HOH HOH . G 6 HOH AAA 23 323 48 HOH HOH . G 6 HOH AAA 24 324 97 HOH HOH . G 6 HOH AAA 25 325 26 HOH HOH . G 6 HOH AAA 26 326 32 HOH HOH . G 6 HOH AAA 27 327 117 HOH HOH . G 6 HOH AAA 28 328 3 HOH HOH . G 6 HOH AAA 29 329 21 HOH HOH . G 6 HOH AAA 30 330 96 HOH HOH . G 6 HOH AAA 31 331 20 HOH HOH . G 6 HOH AAA 32 332 36 HOH HOH . G 6 HOH AAA 33 333 40 HOH HOH . G 6 HOH AAA 34 334 9 HOH HOH . G 6 HOH AAA 35 335 54 HOH HOH . G 6 HOH AAA 36 336 34 HOH HOH . G 6 HOH AAA 37 337 14 HOH HOH . G 6 HOH AAA 38 338 12 HOH HOH . G 6 HOH AAA 39 339 18 HOH HOH . G 6 HOH AAA 40 340 73 HOH HOH . G 6 HOH AAA 41 341 122 HOH HOH . G 6 HOH AAA 42 342 59 HOH HOH . G 6 HOH AAA 43 343 104 HOH HOH . G 6 HOH AAA 44 344 84 HOH HOH . G 6 HOH AAA 45 345 149 HOH HOH . G 6 HOH AAA 46 346 211 HOH HOH . G 6 HOH AAA 47 347 22 HOH HOH . G 6 HOH AAA 48 348 135 HOH HOH . G 6 HOH AAA 49 349 47 HOH HOH . G 6 HOH AAA 50 350 219 HOH HOH . G 6 HOH AAA 51 351 17 HOH HOH . G 6 HOH AAA 52 352 71 HOH HOH . G 6 HOH AAA 53 353 8 HOH HOH . G 6 HOH AAA 54 354 70 HOH HOH . G 6 HOH AAA 55 355 140 HOH HOH . G 6 HOH AAA 56 356 62 HOH HOH . G 6 HOH AAA 57 357 19 HOH HOH . G 6 HOH AAA 58 358 90 HOH HOH . G 6 HOH AAA 59 359 13 HOH HOH . G 6 HOH AAA 60 360 212 HOH HOH . G 6 HOH AAA 61 361 45 HOH HOH . G 6 HOH AAA 62 362 74 HOH HOH . G 6 HOH AAA 63 363 58 HOH HOH . G 6 HOH AAA 64 364 202 HOH HOH . G 6 HOH AAA 65 365 98 HOH HOH . G 6 HOH AAA 66 366 112 HOH HOH . G 6 HOH AAA 67 367 196 HOH HOH . G 6 HOH AAA 68 368 25 HOH HOH . G 6 HOH AAA 69 369 173 HOH HOH . G 6 HOH AAA 70 370 83 HOH HOH . G 6 HOH AAA 71 371 220 HOH HOH . G 6 HOH AAA 72 372 221 HOH HOH . G 6 HOH AAA 73 373 29 HOH HOH . G 6 HOH AAA 74 374 85 HOH HOH . G 6 HOH AAA 75 375 33 HOH HOH . G 6 HOH AAA 76 376 214 HOH HOH . G 6 HOH AAA 77 377 16 HOH HOH . G 6 HOH AAA 78 378 24 HOH HOH . G 6 HOH AAA 79 379 186 HOH HOH . G 6 HOH AAA 80 380 46 HOH HOH . G 6 HOH AAA 81 381 51 HOH HOH . G 6 HOH AAA 82 382 218 HOH HOH . G 6 HOH AAA 83 383 44 HOH HOH . G 6 HOH AAA 84 384 15 HOH HOH . G 6 HOH AAA 85 385 215 HOH HOH . G 6 HOH AAA 86 386 203 HOH HOH . G 6 HOH AAA 87 387 23 HOH HOH . G 6 HOH AAA 88 388 35 HOH HOH . G 6 HOH AAA 89 389 68 HOH HOH . G 6 HOH AAA 90 390 4 HOH HOH . G 6 HOH AAA 91 391 57 HOH HOH . G 6 HOH AAA 92 392 7 HOH HOH . G 6 HOH AAA 93 393 41 HOH HOH . G 6 HOH AAA 94 394 192 HOH HOH . G 6 HOH AAA 95 395 11 HOH HOH . G 6 HOH AAA 96 396 158 HOH HOH . G 6 HOH AAA 97 397 81 HOH HOH . G 6 HOH AAA 98 398 64 HOH HOH . G 6 HOH AAA 99 399 43 HOH HOH . G 6 HOH AAA 100 400 213 HOH HOH . G 6 HOH AAA 101 401 55 HOH HOH . G 6 HOH AAA 102 402 169 HOH HOH . G 6 HOH AAA 103 403 66 HOH HOH . G 6 HOH AAA 104 404 118 HOH HOH . G 6 HOH AAA 105 405 148 HOH HOH . G 6 HOH AAA 106 406 152 HOH HOH . G 6 HOH AAA 107 407 162 HOH HOH . G 6 HOH AAA 108 408 103 HOH HOH . G 6 HOH AAA 109 409 137 HOH HOH . G 6 HOH AAA 110 410 159 HOH HOH . G 6 HOH AAA 111 411 175 HOH HOH . G 6 HOH AAA 112 412 170 HOH HOH . G 6 HOH AAA 113 413 164 HOH HOH . G 6 HOH AAA 114 414 182 HOH HOH . G 6 HOH AAA 115 415 171 HOH HOH . G 6 HOH AAA 116 416 157 HOH HOH . G 6 HOH AAA 117 417 86 HOH HOH . G 6 HOH AAA 118 418 160 HOH HOH . G 6 HOH AAA 119 419 204 HOH HOH . G 6 HOH AAA 120 420 88 HOH HOH . G 6 HOH AAA 121 421 147 HOH HOH . G 6 HOH AAA 122 422 156 HOH HOH . G 6 HOH AAA 123 423 105 HOH HOH . G 6 HOH AAA 124 424 177 HOH HOH . G 6 HOH AAA 125 425 56 HOH HOH . G 6 HOH AAA 126 426 150 HOH HOH . G 6 HOH AAA 127 427 168 HOH HOH . G 6 HOH AAA 128 428 92 HOH HOH . G 6 HOH AAA 129 429 87 HOH HOH . G 6 HOH AAA 130 430 93 HOH HOH . G 6 HOH AAA 131 431 161 HOH HOH . G 6 HOH AAA 132 432 108 HOH HOH . G 6 HOH AAA 133 433 189 HOH HOH . G 6 HOH AAA 134 434 52 HOH HOH . G 6 HOH AAA 135 435 138 HOH HOH . G 6 HOH AAA 136 436 190 HOH HOH . G 6 HOH AAA 137 437 205 HOH HOH . G 6 HOH AAA 138 438 174 HOH HOH . G 6 HOH AAA 139 439 133 HOH HOH . G 6 HOH AAA 140 440 80 HOH HOH . G 6 HOH AAA 141 441 166 HOH HOH . G 6 HOH AAA 142 442 102 HOH HOH . G 6 HOH AAA 143 443 95 HOH HOH . G 6 HOH AAA 144 444 193 HOH HOH . G 6 HOH AAA 145 445 94 HOH HOH . G 6 HOH AAA 146 446 123 HOH HOH . G 6 HOH AAA 147 447 145 HOH HOH . G 6 HOH AAA 148 448 49 HOH HOH . G 6 HOH AAA 149 449 111 HOH HOH . G 6 HOH AAA 150 450 155 HOH HOH . G 6 HOH AAA 151 451 188 HOH HOH . G 6 HOH AAA 152 452 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 RBF . . . B 2 -1.655 -6.378 -13.163 1 6.37 0 N1 RBF 201 AAA 1 HETATM 2 C C2 RBF . . . B 2 -1.874 -6.959 -14.357 1 6.7 0 C2 RBF 201 AAA 1 HETATM 3 O O2 RBF . . . B 2 -2.875 -7.71 -14.539 1 7.57 0 O2 RBF 201 AAA 1 HETATM 4 N N3 RBF . . . B 2 -0.998 -6.796 -15.404 1 7.12 0 N3 RBF 201 AAA 1 HETATM 5 C C4 RBF . . . B 2 0.165 -6.032 -15.345 1 6.61 0 C4 RBF 201 AAA 1 HETATM 6 O O4 RBF . . . B 2 0.927 -6.027 -16.303 1 7.73 0 O4 RBF 201 AAA 1 HETATM 7 C C4A RBF . . . B 2 0.383 -5.346 -14.102 1 6.33 0 C4A RBF 201 AAA 1 HETATM 8 N N5 RBF . . . B 2 1.464 -4.56 -13.972 1 6.52 0 N5 RBF 201 AAA 1 HETATM 9 C C5A RBF . . . B 2 1.646 -4.023 -12.732 1 5.75 0 C5A RBF 201 AAA 1 HETATM 10 C C6 RBF . . . B 2 2.787 -3.174 -12.545 1 6.22 0 C6 RBF 201 AAA 1 HETATM 11 C C7 RBF . . . B 2 3.071 -2.612 -11.339 1 6.6 0 C7 RBF 201 AAA 1 HETATM 12 C C7M RBF . . . B 2 4.352 -1.8 -11.168 1 7 0 C7M RBF 201 AAA 1 HETATM 13 C C8 RBF . . . B 2 2.194 -2.773 -10.266 1 6.76 0 C8 RBF 201 AAA 1 HETATM 14 C C8M RBF . . . B 2 2.436 -2.166 -8.917 1 7.87 0 C8M RBF 201 AAA 1 HETATM 15 C C9 RBF . . . B 2 1.064 -3.579 -10.417 1 6.21 0 C9 RBF 201 AAA 1 HETATM 16 C C9A RBF . . . B 2 0.786 -4.2 -11.64 1 6.36 0 C9A RBF 201 AAA 1 HETATM 17 N N10 RBF . . . B 2 -0.333 -5.036 -11.824 1 5.98 0 N10 RBF 201 AAA 1 HETATM 18 C C10 RBF . . . B 2 -0.568 -5.595 -13.048 1 6.09 0 C10 RBF 201 AAA 1 HETATM 19 C C1' RBF . . . B 2 -1.165 -5.422 -10.663 1 6.2 0 C1' RBF 201 AAA 1 HETATM 20 C C2' RBF . . . B 2 -2.348 -4.523 -10.436 1 6.82 0 C2' RBF 201 AAA 1 HETATM 21 O O2' RBF . . . B 2 -1.929 -3.169 -10.619 1 7 0 O2' RBF 201 AAA 1 HETATM 22 C C3' RBF . . . B 2 -2.929 -4.703 -9.034 1 7.66 0 C3' RBF 201 AAA 1 HETATM 23 O O3' RBF . . . B 2 -1.933 -4.403 -8.087 1 8 0 O3' RBF 201 AAA 1 HETATM 24 C C4' RBF . . . B 2 -3.535 -6.086 -8.761 1 7.97 0 C4' RBF 201 AAA 1 HETATM 25 O O4' RBF . . . B 2 -4.489 -6.429 -9.747 1 8.58 0 O4' RBF 201 AAA 1 HETATM 26 C C5' RBF . . . B 2 -4.165 -6.168 -7.383 1 10.28 0 C5' RBF 201 AAA 1 HETATM 27 O O5' RBF . . . B 2 -5.284 -5.223 -7.363 1 12 0 O5' RBF 201 AAA 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #