data_7QF4
#
_model_server_result.job_id            Nr3IkYh29HOev2qxHiZs7Q 
_model_server_result.datetime_utc      '2024-10-15 13:18:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7qf4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    7QF4 
#
_exptl.entry_id    7QF4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              376.364 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RIBOFLAVIN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7QF4 
_cell.length_a            39.93 
_cell.length_b            39.93 
_cell.length_c            134.65 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7QF4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A N MET 1 AAA MET 1 1_555 C CO CO . AAA CO 202 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc2 A O MET 1 AAA MET 1 1_555 C CO CO . AAA CO 202 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc3 A OE2 GLU 95 AAA GLU 95 1_555 C CO CO . AAA CO 202 4_555 ? ? ? ? A ? ? ? ? ? ? ? 1.977 ? 
metalc ? metalc4 C CO CO . AAA CO 202 1_555 E O HOH . AAA HOH 360 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc5 C CO CO . AAA CO 202 1_555 E O HOH . AAA HOH 373 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc6 C CO CO . AAA CO 202 1_555 E O HOH . AAA HOH 377 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.137 ? 
#
_chem_comp.formula           'C17 H20 N4 O6' 
_chem_comp.formula_weight    376.364 
_chem_comp.id                RBF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RIBOFLAVIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVINE;VITAMIN B2' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 RBF sing 264 n n 
N1 C10 RBF doub 265 n n 
C2 O2 RBF doub 266 n n 
C2 N3 RBF sing 267 n n 
N3 C4 RBF sing 268 n n 
N3 HN3 RBF sing 269 n n 
C4 O4 RBF doub 270 n n 
C4 C4A RBF sing 271 n n 
C4A N5 RBF doub 272 n n 
C4A C10 RBF sing 273 n n 
N5 C5A RBF sing 274 n n 
C5A C6 RBF doub 275 n y 
C5A C9A RBF sing 276 n y 
C6 C7 RBF sing 277 n y 
C6 HC6 RBF sing 278 n n 
C7 C7M RBF sing 279 n n 
C7 C8 RBF doub 280 n y 
C7M HC71 RBF sing 281 n n 
C7M HC72 RBF sing 282 n n 
C7M HC73 RBF sing 283 n n 
C8 C8M RBF sing 284 n n 
C8 C9 RBF sing 285 n y 
C8M HC81 RBF sing 286 n n 
C8M HC82 RBF sing 287 n n 
C8M HC83 RBF sing 288 n n 
C9 C9A RBF doub 289 n y 
C9 HC9 RBF sing 290 n n 
C9A N10 RBF sing 291 n n 
N10 C10 RBF sing 292 n n 
N10 C1' RBF sing 293 n n 
C1' C2' RBF sing 294 n n 
C1' HC11 RBF sing 295 n n 
C1' HC12 RBF sing 296 n n 
C2' O2' RBF sing 297 n n 
C2' C3' RBF sing 298 n n 
C2' HC2' RBF sing 299 n n 
O2' HO2' RBF sing 300 n n 
C3' O3' RBF sing 301 n n 
C3' C4' RBF sing 302 n n 
C3' HC3' RBF sing 303 n n 
O3' HO3' RBF sing 304 n n 
C4' O4' RBF sing 305 n n 
C4' C5' RBF sing 306 n n 
C4' HC4' RBF sing 307 n n 
O4' HO4' RBF sing 308 n n 
C5' O5' RBF sing 309 n n 
C5' HC51 RBF sing 310 n n 
C5' HC52 RBF sing 311 n n 
O5' HO5' RBF sing 312 n n 
#
_atom_sites.entry_id                     7QF4 
_atom_sites.fract_transf_matrix[1][1]    0.025044 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.025044 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007427 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RBF AAA 1 201 2 RBF FMN . 
C 3 CO AAA 1 202 1 CO CO . 
D 4 CL AAA 1 203 2 CL CL . 
E 5 HOH AAA 1 301 105 HOH HOH . 
E 5 HOH AAA 2 302 52 HOH HOH . 
E 5 HOH AAA 3 303 97 HOH HOH . 
E 5 HOH AAA 4 304 47 HOH HOH . 
E 5 HOH AAA 5 305 20 HOH HOH . 
E 5 HOH AAA 6 306 103 HOH HOH . 
E 5 HOH AAA 7 307 49 HOH HOH . 
E 5 HOH AAA 8 308 10 HOH HOH . 
E 5 HOH AAA 9 309 7 HOH HOH . 
E 5 HOH AAA 10 310 60 HOH HOH . 
E 5 HOH AAA 11 311 107 HOH HOH . 
E 5 HOH AAA 12 312 53 HOH HOH . 
E 5 HOH AAA 13 313 15 HOH HOH . 
E 5 HOH AAA 14 314 73 HOH HOH . 
E 5 HOH AAA 15 315 12 HOH HOH . 
E 5 HOH AAA 16 316 51 HOH HOH . 
E 5 HOH AAA 17 317 100 HOH HOH . 
E 5 HOH AAA 18 318 9 HOH HOH . 
E 5 HOH AAA 19 319 54 HOH HOH . 
E 5 HOH AAA 20 320 35 HOH HOH . 
E 5 HOH AAA 21 321 36 HOH HOH . 
E 5 HOH AAA 22 322 21 HOH HOH . 
E 5 HOH AAA 23 323 69 HOH HOH . 
E 5 HOH AAA 24 324 72 HOH HOH . 
E 5 HOH AAA 25 325 17 HOH HOH . 
E 5 HOH AAA 26 326 57 HOH HOH . 
E 5 HOH AAA 27 327 58 HOH HOH . 
E 5 HOH AAA 28 328 45 HOH HOH . 
E 5 HOH AAA 29 329 18 HOH HOH . 
E 5 HOH AAA 30 330 14 HOH HOH . 
E 5 HOH AAA 31 331 50 HOH HOH . 
E 5 HOH AAA 32 332 86 HOH HOH . 
E 5 HOH AAA 33 333 2 HOH HOH . 
E 5 HOH AAA 34 334 6 HOH HOH . 
E 5 HOH AAA 35 335 111 HOH HOH . 
E 5 HOH AAA 36 336 110 HOH HOH . 
E 5 HOH AAA 37 337 25 HOH HOH . 
E 5 HOH AAA 38 338 75 HOH HOH . 
E 5 HOH AAA 39 339 43 HOH HOH . 
E 5 HOH AAA 40 340 11 HOH HOH . 
E 5 HOH AAA 41 341 65 HOH HOH . 
E 5 HOH AAA 42 342 56 HOH HOH . 
E 5 HOH AAA 43 343 29 HOH HOH . 
E 5 HOH AAA 44 344 26 HOH HOH . 
E 5 HOH AAA 45 345 77 HOH HOH . 
E 5 HOH AAA 46 346 33 HOH HOH . 
E 5 HOH AAA 47 347 112 HOH HOH . 
E 5 HOH AAA 48 348 38 HOH HOH . 
E 5 HOH AAA 49 349 28 HOH HOH . 
E 5 HOH AAA 50 350 23 HOH HOH . 
E 5 HOH AAA 51 351 70 HOH HOH . 
E 5 HOH AAA 52 352 41 HOH HOH . 
E 5 HOH AAA 53 353 19 HOH HOH . 
E 5 HOH AAA 54 354 42 HOH HOH . 
E 5 HOH AAA 55 355 59 HOH HOH . 
E 5 HOH AAA 56 356 5 HOH HOH . 
E 5 HOH AAA 57 357 109 HOH HOH . 
E 5 HOH AAA 58 358 102 HOH HOH . 
E 5 HOH AAA 59 359 24 HOH HOH . 
E 5 HOH AAA 60 360 64 HOH HOH . 
E 5 HOH AAA 61 361 31 HOH HOH . 
E 5 HOH AAA 62 362 3 HOH HOH . 
E 5 HOH AAA 63 363 44 HOH HOH . 
E 5 HOH AAA 64 364 4 HOH HOH . 
E 5 HOH AAA 65 365 39 HOH HOH . 
E 5 HOH AAA 66 366 113 HOH HOH . 
E 5 HOH AAA 67 367 16 HOH HOH . 
E 5 HOH AAA 68 368 37 HOH HOH . 
E 5 HOH AAA 69 369 114 HOH HOH . 
E 5 HOH AAA 70 370 27 HOH HOH . 
E 5 HOH AAA 71 371 30 HOH HOH . 
E 5 HOH AAA 72 372 90 HOH HOH . 
E 5 HOH AAA 73 373 61 HOH HOH . 
E 5 HOH AAA 74 374 101 HOH HOH . 
E 5 HOH AAA 75 375 22 HOH HOH . 
E 5 HOH AAA 76 376 98 HOH HOH . 
E 5 HOH AAA 77 377 66 HOH HOH . 
E 5 HOH AAA 78 378 88 HOH HOH . 
E 5 HOH AAA 79 379 13 HOH HOH . 
E 5 HOH AAA 80 380 62 HOH HOH . 
E 5 HOH AAA 81 381 87 HOH HOH . 
E 5 HOH AAA 82 382 85 HOH HOH . 
E 5 HOH AAA 83 383 32 HOH HOH . 
E 5 HOH AAA 84 384 81 HOH HOH . 
E 5 HOH AAA 85 385 67 HOH HOH . 
E 5 HOH AAA 86 386 8 HOH HOH . 
E 5 HOH AAA 87 387 55 HOH HOH . 
E 5 HOH AAA 88 388 48 HOH HOH . 
E 5 HOH AAA 89 389 76 HOH HOH . 
E 5 HOH AAA 90 390 74 HOH HOH . 
E 5 HOH AAA 91 391 91 HOH HOH . 
E 5 HOH AAA 92 392 92 HOH HOH . 
E 5 HOH AAA 93 393 89 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 RBF . . . B 2 -1.678 -6.296 -13.126 1 8.78 0 N1 RBF 201 AAA 1 
HETATM 2 C C2 RBF . . . B 2 -1.919 -6.868 -14.326 1 9.1 0 C2 RBF 201 AAA 1 
HETATM 3 O O2 RBF . . . B 2 -2.942 -7.626 -14.504 1 9.66 0 O2 RBF 201 AAA 1 
HETATM 4 N N3 RBF . . . B 2 -1.042 -6.718 -15.372 1 8.82 0 N3 RBF 201 AAA 1 
HETATM 5 C C4 RBF . . . B 2 0.129 -5.969 -15.301 1 8.9 0 C4 RBF 201 AAA 1 
HETATM 6 O O4 RBF . . . B 2 0.888 -5.959 -16.255 1 9.68 0 O4 RBF 201 AAA 1 
HETATM 7 C C4A RBF . . . B 2 0.343 -5.293 -14.053 1 8.37 0 C4A RBF 201 AAA 1 
HETATM 8 N N5 RBF . . . B 2 1.432 -4.522 -13.931 1 8.22 0 N5 RBF 201 AAA 1 
HETATM 9 C C5A RBF . . . B 2 1.617 -3.942 -12.706 1 7.82 0 C5A RBF 201 AAA 1 
HETATM 10 C C6 RBF . . . B 2 2.764 -3.12 -12.513 1 8.05 0 C6 RBF 201 AAA 1 
HETATM 11 C C7 RBF . . . B 2 3.045 -2.518 -11.313 1 8.58 0 C7 RBF 201 AAA 1 
HETATM 12 C C7M RBF . . . B 2 4.304 -1.705 -11.136 1 8.99 0 C7M RBF 201 AAA 1 
HETATM 13 C C8 RBF . . . B 2 2.151 -2.662 -10.251 1 7.72 0 C8 RBF 201 AAA 1 
HETATM 14 C C8M RBF . . . B 2 2.381 -2.036 -8.903 1 9.48 0 C8M RBF 201 AAA 1 
HETATM 15 C C9 RBF . . . B 2 1.034 -3.497 -10.396 1 7.89 0 C9 RBF 201 AAA 1 
HETATM 16 C C9A RBF . . . B 2 0.754 -4.121 -11.608 1 7.47 0 C9A RBF 201 AAA 1 
HETATM 17 N N10 RBF . . . B 2 -0.353 -4.947 -11.791 1 8.25 0 N10 RBF 201 AAA 1 
HETATM 18 C C10 RBF . . . B 2 -0.581 -5.522 -13.022 1 7.88 0 C10 RBF 201 AAA 1 
HETATM 19 C C1' RBF . . . B 2 -1.221 -5.288 -10.655 1 8.36 0 C1' RBF 201 AAA 1 
HETATM 20 C C2' RBF . . . B 2 -2.407 -4.395 -10.441 1 8.14 0 C2' RBF 201 AAA 1 
HETATM 21 O O2' RBF . . . B 2 -1.953 -3.07 -10.66 1 9.09 0 O2' RBF 201 AAA 1 
HETATM 22 C C3' RBF . . . B 2 -2.975 -4.537 -9.031 1 9.9 0 C3' RBF 201 AAA 1 
HETATM 23 O O3' RBF . . . B 2 -1.972 -4.256 -8.09 1 10.32 0 O3' RBF 201 AAA 1 
HETATM 24 C C4' RBF . . . B 2 -3.587 -5.91 -8.731 1 10.18 0 C4' RBF 201 AAA 1 
HETATM 25 O O4' RBF . . . B 2 -4.544 -6.267 -9.723 1 11.09 0 O4' RBF 201 AAA 1 
HETATM 26 C C5' RBF . . . B 2 -4.201 -5.998 -7.357 1 10.97 0 C5' RBF 201 AAA 1 
HETATM 27 O O5' RBF . . . B 2 -5.337 -5.04 -7.287 1 13.11 0 O5' RBF 201 AAA 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#